Wall clock time and date at job start Sun Mar 29 2020 22:55:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42901 * 109.47363 * 2 1 4 4 C 1.42898 * 114.00292 * 180.02562 * 3 2 1 5 5 H 1.09003 * 109.46671 * 330.00549 * 4 3 2 6 6 C 1.53001 * 109.47280 * 90.00073 * 4 3 2 7 7 N 1.46501 * 109.47381 * 210.00279 * 4 3 2 8 8 C 1.34951 * 126.03605 * 5.26000 * 7 4 3 9 9 C 1.35306 * 107.74429 * 180.14882 * 8 7 4 10 10 C 1.50706 * 126.04096 * 179.87280 * 9 8 7 11 11 C 1.52999 * 109.47090 * 269.71662 * 10 9 8 12 12 C 1.52996 * 109.47188 * 179.97438 * 11 10 9 13 13 C 1.50702 * 109.47076 * 179.97438 * 12 11 10 14 14 H 1.07998 * 120.00209 * 0.02562 * 13 12 11 15 15 C 1.37881 * 119.99983 * 179.97438 * 13 12 11 16 16 N 1.31514 * 119.99620 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 120.00221 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.46944 * 0.02562 * 17 15 13 19 19 H 1.48495 * 109.47320 * 120.00109 * 17 15 13 20 20 H 1.48500 * 109.46985 * 240.00704 * 17 15 13 21 21 C 1.39869 * 107.92235 * 359.60729 * 9 8 7 22 22 N 1.30838 * 108.20185 * 0.24422 * 21 9 8 23 23 H 1.09001 * 109.47363 * 59.99781 * 1 2 3 24 24 H 1.09003 * 109.47656 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47263 * 299.99789 * 1 2 3 26 26 H 1.09000 * 109.46759 * 240.00056 * 2 1 3 27 27 H 1.09001 * 109.47363 * 120.00219 * 2 1 3 28 28 H 1.08999 * 109.47143 * 59.99900 * 6 4 3 29 29 H 1.09000 * 109.47462 * 180.02562 * 6 4 3 30 30 H 1.09002 * 109.46826 * 299.99895 * 6 4 3 31 31 H 1.07996 * 126.12367 * 359.97438 * 8 7 4 32 32 H 1.08994 * 109.46790 * 29.71060 * 10 9 8 33 33 H 1.08997 * 109.47305 * 149.71501 * 10 9 8 34 34 H 1.09011 * 109.46854 * 299.99717 * 11 10 9 35 35 H 1.09005 * 109.47366 * 59.99142 * 11 10 9 36 36 H 1.08994 * 109.46779 * 299.99451 * 12 11 10 37 37 H 1.08997 * 109.47218 * 59.99832 * 12 11 10 38 38 H 0.97008 * 119.99745 * 179.97438 * 16 15 13 39 39 H 1.08000 * 125.90176 * 180.22053 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.8635 0.6014 0.5129 6 6 3.9387 1.5006 -1.4433 7 7 3.8236 2.6910 0.6901 8 6 2.9943 3.5399 1.3326 9 6 3.7438 4.5502 1.8311 10 6 3.2324 5.7274 2.6210 11 6 2.8812 6.8692 1.6650 12 6 2.3614 8.0640 2.4668 13 6 2.0161 9.1889 1.5253 14 1 2.1532 9.0639 0.4613 15 6 1.5241 10.3773 2.0220 16 7 1.3567 10.5293 3.3176 17 14 1.0953 11.7713 0.8549 18 1 1.3725 11.3503 -0.5420 19 1 -0.3443 12.1079 0.9935 20 1 1.9166 12.9636 1.1852 21 6 5.0778 4.3058 1.4890 22 7 5.1268 3.1916 0.8050 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8932 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 3.5060 2.3592 -1.9568 29 1 5.0253 1.5862 -1.4438 30 1 3.6466 0.5848 -1.9571 31 1 1.9240 3.4335 1.4290 32 1 2.3426 5.4327 3.1772 33 1 4.0025 6.0601 3.3169 34 1 3.7711 7.1639 1.1086 35 1 2.1112 6.5364 0.9689 36 1 1.4716 7.7690 3.0228 37 1 3.1312 8.3969 3.1631 38 1 1.0109 11.3655 3.6671 39 1 5.9217 4.9294 1.7448 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250065738.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:55:31 Heat of formation + Delta-G solvation = 12.342800 kcal Electronic energy + Delta-G solvation = -18008.504279 eV Core-core repulsion = 15145.592104 eV Total energy + Delta-G solvation = -2862.912175 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.05338 -38.68989 -34.78052 -33.46297 -32.24269 -30.88849 -30.17059 -29.30162 -26.31563 -23.98657 -23.30941 -22.78775 -20.55959 -20.27050 -19.50385 -17.70500 -16.87256 -16.15194 -16.06121 -14.84515 -14.46503 -14.33973 -13.98261 -13.81227 -13.54216 -13.06124 -12.86317 -12.51111 -12.43892 -12.32637 -12.10470 -11.86347 -11.75446 -11.41033 -11.17854 -10.80372 -10.55966 -10.47604 -10.31483 -10.24669 -9.50881 -9.23763 -9.19686 -8.98741 -8.25946 -7.94303 -5.91321 -3.92621 2.06434 2.19339 3.12218 3.36479 3.39135 3.43635 3.48692 4.39569 4.52024 4.53738 4.64900 4.76870 4.89316 4.94350 5.16311 5.23015 5.33154 5.41987 5.44340 5.49520 5.71441 5.76049 5.80840 5.88314 6.09180 6.34168 6.40705 6.49449 6.61370 6.95530 7.00912 7.10921 7.20180 7.32388 7.80172 7.93527 7.97444 8.11119 8.54972 9.15322 9.70857 11.20058 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.025137 B = 0.003757 C = 0.003545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.610184 B = 7451.293560 C = 7895.934750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.064 3.936 3 O -0.387 6.387 4 C 0.342 3.658 5 H 0.079 0.921 6 C -0.177 4.177 7 N -0.386 5.386 8 C 0.067 3.933 9 C -0.221 4.221 10 C -0.043 4.043 11 C -0.102 4.102 12 C 0.019 3.981 13 C -0.516 4.516 14 H 0.054 0.946 15 C 0.055 3.945 16 N -0.897 5.897 17 Si 0.889 3.111 18 H -0.273 1.273 19 H -0.285 1.285 20 H -0.284 1.284 21 C 0.056 3.944 22 N -0.299 5.299 23 H 0.066 0.934 24 H 0.075 0.925 25 H 0.067 0.933 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.072 0.928 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.171 0.829 32 H 0.061 0.939 33 H 0.064 0.936 34 H 0.046 0.954 35 H 0.044 0.956 36 H 0.015 0.985 37 H 0.015 0.985 38 H 0.258 0.742 39 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.381 -23.000 -5.931 23.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.013 4.013 3 O -0.305 6.305 4 C 0.201 3.799 5 H 0.097 0.903 6 C -0.236 4.236 7 N -0.172 5.172 8 C -0.078 4.078 9 C -0.232 4.232 10 C -0.082 4.082 11 C -0.140 4.140 12 C -0.018 4.018 13 C -0.554 4.554 14 H 0.072 0.928 15 C -0.146 4.146 16 N -0.537 5.537 17 Si 0.718 3.282 18 H -0.198 1.198 19 H -0.211 1.211 20 H -0.211 1.211 21 C -0.130 4.130 22 N -0.121 5.121 23 H 0.085 0.915 24 H 0.093 0.907 25 H 0.086 0.914 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.091 0.909 29 H 0.100 0.900 30 H 0.091 0.909 31 H 0.188 0.812 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.033 0.967 37 H 0.034 0.966 38 H 0.068 0.932 39 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 2.869 -23.711 -6.510 24.756 hybrid contribution -0.714 1.253 -0.176 1.452 sum 2.156 -22.459 -6.685 23.532 Atomic orbital electron populations 1.21763 0.92835 1.02604 1.03767 1.22591 0.96180 0.81894 1.00593 1.87845 1.19536 1.28331 1.94761 1.21458 0.81297 0.84381 0.92741 0.90322 1.22463 1.03049 1.03412 0.94641 1.48638 1.05572 1.19751 1.43197 1.22260 0.97644 0.91257 0.96629 1.20422 0.92736 1.00307 1.09723 1.20056 0.99951 0.91470 0.96736 1.21613 0.99673 0.95049 0.97676 1.19134 0.96087 0.91381 0.95214 1.21346 1.42126 0.98429 0.93542 0.92764 1.25028 0.95940 0.98613 0.94998 1.69983 1.46421 1.25687 1.11599 0.86576 0.77967 0.82371 0.81334 1.19789 1.21096 1.21069 1.23866 0.97941 0.94354 0.96889 1.77238 0.97241 1.13857 1.23766 0.91461 0.90659 0.91417 0.92636 0.92795 0.90922 0.90018 0.90914 0.81175 0.92075 0.91727 0.93564 0.93749 0.96692 0.96617 0.93192 0.79921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 10.28 37.15 0.38 -0.59 16 2 C 0.06 0.46 6.47 37.15 0.24 0.70 16 3 O -0.39 -4.18 9.16 -35.23 -0.32 -4.51 16 4 C 0.34 3.79 4.02 -4.04 -0.02 3.78 16 5 H 0.08 0.74 7.79 -51.93 -0.40 0.34 16 6 C -0.18 -1.71 9.71 37.16 0.36 -1.35 16 7 N -0.39 -5.63 3.68 -59.45 -0.22 -5.85 16 8 C 0.07 1.04 10.78 -17.23 -0.19 0.85 16 9 C -0.22 -3.66 5.35 -105.05 -0.56 -4.22 16 10 C -0.04 -0.78 5.70 -27.88 -0.16 -0.94 16 11 C -0.10 -2.22 5.13 -26.73 -0.14 -2.36 16 12 C 0.02 0.50 4.97 -27.88 -0.14 0.36 16 13 C -0.52 -15.12 9.11 -34.44 -0.31 -15.43 16 14 H 0.05 1.56 7.74 -52.49 -0.41 1.15 16 15 C 0.05 1.61 5.46 -17.82 -0.10 1.52 16 16 N -0.90 -27.56 13.29 55.43 0.74 -26.82 16 17 Si 0.89 22.20 29.54 -169.99 -5.02 17.18 16 18 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 19 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 20 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 21 C 0.06 0.87 11.96 -17.36 -0.21 0.66 16 22 N -0.30 -4.69 12.42 30.62 0.38 -4.31 16 23 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 25 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.31 7.87 -51.93 -0.41 -0.10 16 27 H 0.05 0.33 8.09 -51.93 -0.42 -0.09 16 28 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.07 0.51 7.87 -51.93 -0.41 0.10 16 31 H 0.17 2.44 7.79 -52.49 -0.41 2.03 16 32 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.05 1.00 8.14 -51.92 -0.42 0.58 16 35 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 39 H 0.18 2.39 8.06 -52.49 -0.42 1.97 16 LS Contribution 331.42 15.07 4.99 4.99 Total: -1.00 -33.10 331.42 -6.95 -40.05 By element: Atomic # 1 Polarization: 2.96 SS G_CDS: -6.66 Total: -3.71 kcal Atomic # 6 Polarization: -16.20 SS G_CDS: -0.83 Total: -17.04 kcal Atomic # 7 Polarization: -37.88 SS G_CDS: 0.90 Total: -36.98 kcal Atomic # 8 Polarization: -4.18 SS G_CDS: -0.32 Total: -4.51 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -33.10 -6.95 -40.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250065738.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.397 kcal (2) G-P(sol) polarization free energy of solvation -33.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.054 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds