Wall clock time and date at job start Sun Mar 29 2020 23:59:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99542 * 2 1 4 4 H 1.48502 * 109.46952 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47555 * 299.99848 * 3 2 1 6 6 H 1.48501 * 109.47314 * 60.00262 * 3 2 1 7 7 C 1.37870 * 120.00343 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00473 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99874 * 0.02562 * 7 2 1 10 10 C 1.53008 * 109.47083 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47210 * 179.97438 * 10 9 7 12 12 N 1.46897 * 109.47134 * 179.97438 * 11 10 9 13 13 C 1.46899 * 110.99898 * 179.97438 * 12 11 10 14 14 C 1.53123 * 109.57491 * 85.30254 * 13 12 11 15 15 C 1.53034 * 109.27992 * 177.60193 * 14 13 12 16 16 N 1.46847 * 109.51345 * 300.80438 * 15 14 13 17 17 C 1.46895 * 110.99982 * 185.84805 * 16 15 14 18 18 C 1.53001 * 117.49790 * 248.62113 * 17 16 15 19 19 C 1.53006 * 60.00157 * 252.50752 * 18 17 16 20 20 C 1.46843 * 111.20124 * 61.74903 * 16 15 14 21 21 C 1.53042 * 109.52278 * 298.25596 * 20 16 15 22 22 H 0.96991 * 120.00122 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.47235 * 59.99888 * 9 7 2 24 24 H 1.08991 * 109.47290 * 299.99860 * 9 7 2 25 25 H 1.09000 * 109.47013 * 59.99952 * 10 9 7 26 26 H 1.09005 * 109.47220 * 300.00061 * 10 9 7 27 27 H 1.09011 * 109.46613 * 60.00144 * 11 10 9 28 28 H 1.08999 * 109.47477 * 300.00492 * 11 10 9 29 29 H 1.00895 * 110.99463 * 56.05178 * 12 11 10 30 30 H 1.09003 * 109.52480 * 325.13364 * 13 12 11 31 31 H 1.08997 * 109.51083 * 57.64787 * 14 13 12 32 32 H 1.08998 * 109.48980 * 297.53718 * 14 13 12 33 33 H 1.09002 * 109.46271 * 180.79158 * 15 14 13 34 34 H 1.08994 * 109.46242 * 60.81457 * 15 14 13 35 35 H 1.09002 * 115.55182 * 34.32677 * 17 16 15 36 36 H 1.08993 * 117.50121 * 359.97438 * 18 17 16 37 37 H 1.08996 * 117.49842 * 145.02062 * 18 17 16 38 38 H 1.08995 * 117.50070 * 252.51168 * 19 18 17 39 39 H 1.08994 * 117.49688 * 107.48335 * 19 18 17 40 40 H 1.08993 * 109.46313 * 58.27251 * 20 16 15 41 41 H 1.09000 * 109.46480 * 178.25361 * 20 16 15 42 42 H 1.08997 * 109.50758 * 179.11703 * 21 20 16 43 43 H 1.08998 * 109.50897 * 299.20258 * 21 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2455 -3.6620 0.0005 11 6 1.4806 -4.9871 0.0012 12 7 2.4352 -6.1036 0.0006 13 6 1.7350 -7.3949 0.0018 14 6 1.3851 -7.7901 -1.4356 15 6 0.7096 -9.1633 -1.4319 16 7 1.6170 -10.1547 -0.8401 17 6 1.0582 -11.5090 -0.9456 18 6 0.6204 -12.1955 0.3498 19 6 1.8859 -12.6615 -0.3731 20 6 1.9299 -9.8218 0.5555 21 6 2.6415 -8.4680 0.6112 22 1 -0.4850 0.8400 0.0004 23 1 0.6248 -2.5571 -0.8897 24 1 0.6242 -2.5567 0.8902 25 1 2.8722 -3.6042 0.8905 26 1 2.8722 -3.6043 -0.8895 27 1 0.8536 -5.0450 -0.8887 28 1 0.8542 -5.0446 0.8913 29 1 3.0705 -6.0364 0.7815 30 1 0.8210 -7.3131 0.5900 31 1 2.2956 -7.8339 -2.0331 32 1 0.7055 -7.0514 -1.8606 33 1 0.4719 -9.4539 -2.4552 34 1 -0.2079 -9.1152 -0.8456 35 1 0.4727 -11.7074 -1.8434 36 1 0.7474 -11.6424 1.2803 37 1 -0.2533 -12.8456 0.3044 38 1 1.8447 -13.6180 -0.8940 39 1 2.8451 -12.4146 0.0819 40 1 1.0065 -9.7707 1.1324 41 1 2.5786 -10.5904 0.9756 42 1 2.8596 -8.2139 1.6485 43 1 3.5722 -8.5225 0.0465 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001256067813.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:59:34 Heat of formation + Delta-G solvation = 11.993879 kcal Electronic energy + Delta-G solvation = -18410.710785 eV Core-core repulsion = 15683.616574 eV Total energy + Delta-G solvation = -2727.094210 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.89118 -37.34748 -35.09433 -33.35124 -31.68966 -30.92882 -29.41513 -26.12762 -23.97906 -23.20482 -22.70556 -22.10970 -20.67505 -20.20014 -19.36718 -16.96340 -16.27349 -15.86075 -15.36781 -14.70753 -14.65297 -14.38478 -14.25530 -13.96871 -13.70261 -12.86150 -12.61121 -12.28091 -12.16722 -11.89099 -11.84693 -11.77605 -11.30503 -11.16435 -10.92586 -10.90150 -10.67264 -10.64905 -10.54589 -10.37634 -10.28195 -9.66042 -9.29508 -9.00940 -8.36167 -8.32373 -8.13091 -5.97346 -3.99233 3.32984 3.35953 3.40240 3.45021 3.74564 4.31379 4.48557 4.50063 4.60758 4.64932 4.70094 4.85472 5.10381 5.18563 5.20941 5.33966 5.38173 5.38519 5.45257 5.53881 5.58740 5.64230 5.69557 5.80669 5.82317 5.84799 5.96693 6.03417 6.13362 6.33650 6.41179 6.75678 6.82391 6.84952 6.89871 7.17300 7.40893 7.68181 7.72011 7.86885 8.03514 8.46978 9.08374 9.64744 11.14221 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.068410 B = 0.002930 C = 0.002889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 409.199674 B = 9553.329296 C = 9688.999201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.517 4.517 8 H 0.056 0.944 9 C 0.022 3.978 10 C -0.107 4.107 11 C 0.060 3.940 12 N -0.686 5.686 13 C 0.086 3.914 14 C -0.105 4.105 15 C 0.058 3.942 16 N -0.505 5.505 17 C 0.024 3.976 18 C -0.224 4.224 19 C -0.172 4.172 20 C 0.055 3.945 21 C -0.119 4.119 22 H 0.259 0.741 23 H 0.016 0.984 24 H 0.013 0.987 25 H 0.044 0.956 26 H 0.056 0.944 27 H 0.066 0.934 28 H 0.022 0.978 29 H 0.337 0.663 30 H 0.037 0.963 31 H 0.079 0.921 32 H 0.069 0.931 33 H 0.077 0.923 34 H 0.033 0.967 35 H 0.119 0.881 36 H 0.098 0.902 37 H 0.092 0.908 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.037 0.963 41 H 0.075 0.925 42 H 0.065 0.935 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.734 -24.245 0.182 24.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.555 4.555 8 H 0.074 0.926 9 C -0.016 4.016 10 C -0.145 4.145 11 C -0.069 4.069 12 N -0.317 5.317 13 C -0.024 4.024 14 C -0.143 4.143 15 C -0.070 4.070 16 N -0.227 5.227 17 C -0.086 4.086 18 C -0.263 4.263 19 C -0.210 4.210 20 C -0.073 4.073 21 C -0.157 4.157 22 H 0.069 0.931 23 H 0.034 0.966 24 H 0.031 0.969 25 H 0.063 0.937 26 H 0.075 0.925 27 H 0.084 0.916 28 H 0.040 0.960 29 H 0.155 0.845 30 H 0.055 0.945 31 H 0.097 0.903 32 H 0.087 0.913 33 H 0.095 0.905 34 H 0.051 0.949 35 H 0.137 0.863 36 H 0.116 0.884 37 H 0.111 0.889 38 H 0.115 0.885 39 H 0.114 0.886 40 H 0.055 0.945 41 H 0.094 0.906 42 H 0.084 0.916 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 2.113 -24.062 -0.776 24.167 hybrid contribution -0.750 0.869 1.439 1.841 sum 1.364 -23.193 0.663 23.242 Atomic orbital electron populations 1.69979 1.06067 1.26423 1.51226 1.25038 0.94853 0.99288 0.95431 0.86539 0.80156 0.83802 0.77533 1.19712 1.21012 1.21076 1.21304 0.93105 0.91057 1.50070 0.92608 1.19071 0.94034 0.91437 0.97064 1.21621 0.99152 0.92995 1.00700 1.22166 0.94121 0.90879 0.99720 1.60573 1.20246 1.01072 1.49787 1.21539 0.95377 0.89440 0.96093 1.21588 1.01566 0.94192 0.96972 1.22130 0.93405 0.92025 0.99407 1.61806 1.43014 1.00220 1.17656 1.22665 1.01039 0.88021 0.96838 1.23562 0.99151 1.05474 0.98122 1.23057 0.95747 0.98293 1.03917 1.22160 0.99067 0.97417 0.88626 1.21792 0.99886 0.93306 1.00716 0.93116 0.96604 0.96874 0.93718 0.92535 0.91558 0.95958 0.84466 0.94524 0.90276 0.91255 0.90499 0.94854 0.86346 0.88374 0.88913 0.88528 0.88561 0.94523 0.90614 0.91622 0.90080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.42 13.29 55.43 0.74 -26.69 16 2 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 4 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 7 C -0.52 -14.97 9.11 -34.44 -0.31 -15.28 16 8 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 9 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 10 C -0.11 -2.26 5.41 -26.73 -0.14 -2.40 16 11 C 0.06 1.06 5.49 -3.83 -0.02 1.04 16 12 N -0.69 -10.21 6.32 -106.59 -0.67 -10.88 16 13 C 0.09 1.08 2.56 -67.58 -0.17 0.91 16 14 C -0.10 -1.28 5.59 -26.65 -0.15 -1.43 16 15 C 0.06 0.61 5.44 -3.84 -0.02 0.59 16 16 N -0.50 -5.12 4.88 -226.70 -1.11 -6.22 16 17 C 0.02 0.21 6.11 -67.71 -0.41 -0.21 16 18 C -0.22 -1.72 9.58 -26.73 -0.26 -1.97 16 19 C -0.17 -1.30 9.94 -26.72 -0.27 -1.56 16 20 C 0.06 0.54 4.12 -3.83 -0.02 0.52 16 21 C -0.12 -1.26 5.36 -26.64 -0.14 -1.41 16 22 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 23 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 24 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 27 H 0.07 1.20 7.51 -51.92 -0.39 0.81 16 28 H 0.02 0.40 8.06 -51.93 -0.42 -0.02 16 29 H 0.34 4.70 8.36 -39.29 -0.33 4.38 16 30 H 0.04 0.50 7.80 -51.93 -0.41 0.09 16 31 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.07 0.90 7.54 -51.93 -0.39 0.50 16 33 H 0.08 0.72 8.07 -51.93 -0.42 0.30 16 34 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.12 0.92 8.04 -51.93 -0.42 0.50 16 36 H 0.10 0.78 5.97 -51.93 -0.31 0.47 16 37 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.10 0.76 7.23 -51.93 -0.38 0.38 16 40 H 0.04 0.36 7.12 -51.93 -0.37 -0.01 16 41 H 0.08 0.67 6.42 -51.93 -0.33 0.34 16 42 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 334.07 15.07 5.03 5.03 Total: -1.00 -30.25 334.07 -11.11 -41.35 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -7.93 Total: -0.29 kcal Atomic # 6 Polarization: -17.13 SS G_CDS: -2.15 Total: -19.28 kcal Atomic # 7 Polarization: -42.75 SS G_CDS: -1.04 Total: -43.79 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.25 -11.11 -41.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256067813.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.348 kcal (2) G-P(sol) polarization free energy of solvation -30.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.354 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds