Wall clock time and date at job start Sun Mar 29 2020 23:59:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99542 * 2 1 4 4 H 1.48502 * 109.46952 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47555 * 299.99848 * 3 2 1 6 6 H 1.48501 * 109.47314 * 60.00262 * 3 2 1 7 7 C 1.37870 * 120.00343 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00473 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99874 * 0.02562 * 7 2 1 10 10 C 1.53008 * 109.47083 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47210 * 179.97438 * 10 9 7 12 12 N 1.46897 * 109.47134 * 179.97438 * 11 10 9 13 13 C 1.46899 * 110.99898 * 179.97438 * 12 11 10 14 14 C 1.53123 * 109.57491 * 85.30254 * 13 12 11 15 15 C 1.53034 * 109.27992 * 177.60193 * 14 13 12 16 16 N 1.46847 * 109.51345 * 300.80438 * 15 14 13 17 17 C 1.46895 * 110.99982 * 185.84805 * 16 15 14 18 18 C 1.53001 * 117.49790 * 248.62113 * 17 16 15 19 19 C 1.53006 * 60.00157 * 252.50752 * 18 17 16 20 20 C 1.46843 * 111.20124 * 61.74903 * 16 15 14 21 21 C 1.53042 * 109.52278 * 298.25596 * 20 16 15 22 22 H 0.96991 * 120.00122 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.47235 * 59.99888 * 9 7 2 24 24 H 1.08991 * 109.47290 * 299.99860 * 9 7 2 25 25 H 1.09000 * 109.47013 * 59.99952 * 10 9 7 26 26 H 1.09005 * 109.47220 * 300.00061 * 10 9 7 27 27 H 1.09011 * 109.46613 * 60.00144 * 11 10 9 28 28 H 1.08999 * 109.47477 * 300.00492 * 11 10 9 29 29 H 1.00895 * 110.99463 * 56.05178 * 12 11 10 30 30 H 1.09003 * 109.52480 * 325.13364 * 13 12 11 31 31 H 1.08997 * 109.51083 * 57.64787 * 14 13 12 32 32 H 1.08998 * 109.48980 * 297.53718 * 14 13 12 33 33 H 1.09002 * 109.46271 * 180.79158 * 15 14 13 34 34 H 1.08994 * 109.46242 * 60.81457 * 15 14 13 35 35 H 1.09002 * 115.55182 * 34.32677 * 17 16 15 36 36 H 1.08993 * 117.50121 * 359.97438 * 18 17 16 37 37 H 1.08996 * 117.49842 * 145.02062 * 18 17 16 38 38 H 1.08995 * 117.50070 * 252.51168 * 19 18 17 39 39 H 1.08994 * 117.49688 * 107.48335 * 19 18 17 40 40 H 1.08993 * 109.46313 * 58.27251 * 20 16 15 41 41 H 1.09000 * 109.46480 * 178.25361 * 20 16 15 42 42 H 1.08997 * 109.50758 * 179.11703 * 21 20 16 43 43 H 1.08998 * 109.50897 * 299.20258 * 21 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2455 -3.6620 0.0005 11 6 1.4806 -4.9871 0.0012 12 7 2.4352 -6.1036 0.0006 13 6 1.7350 -7.3949 0.0018 14 6 1.3851 -7.7901 -1.4356 15 6 0.7096 -9.1633 -1.4319 16 7 1.6170 -10.1547 -0.8401 17 6 1.0582 -11.5090 -0.9456 18 6 0.6204 -12.1955 0.3498 19 6 1.8859 -12.6615 -0.3731 20 6 1.9299 -9.8218 0.5555 21 6 2.6415 -8.4680 0.6112 22 1 -0.4850 0.8400 0.0004 23 1 0.6248 -2.5571 -0.8897 24 1 0.6242 -2.5567 0.8902 25 1 2.8722 -3.6042 0.8905 26 1 2.8722 -3.6043 -0.8895 27 1 0.8536 -5.0450 -0.8887 28 1 0.8542 -5.0446 0.8913 29 1 3.0705 -6.0364 0.7815 30 1 0.8210 -7.3131 0.5900 31 1 2.2956 -7.8339 -2.0331 32 1 0.7055 -7.0514 -1.8606 33 1 0.4719 -9.4539 -2.4552 34 1 -0.2079 -9.1152 -0.8456 35 1 0.4727 -11.7074 -1.8434 36 1 0.7474 -11.6424 1.2803 37 1 -0.2533 -12.8456 0.3044 38 1 1.8447 -13.6180 -0.8940 39 1 2.8451 -12.4146 0.0819 40 1 1.0065 -9.7707 1.1324 41 1 2.5786 -10.5904 0.9756 42 1 2.8596 -8.2139 1.6485 43 1 3.5722 -8.5225 0.0465 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001256067813.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:59:33 Heat of formation + Delta-G solvation = -7.241549 kcal Electronic energy + Delta-G solvation = -18411.544896 eV Core-core repulsion = 15683.616574 eV Total energy + Delta-G solvation = -2727.928321 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.69508 -38.36359 -36.44486 -35.07970 -33.26659 -31.87248 -30.74421 -27.88874 -25.23072 -24.15072 -23.70708 -23.18598 -21.94055 -21.49598 -20.32092 -18.48560 -17.68490 -16.93458 -16.55389 -16.30901 -15.79382 -15.69496 -15.16049 -15.06195 -14.83869 -14.35748 -13.89145 -13.63792 -13.44256 -13.20107 -13.01359 -12.80921 -12.55784 -12.51150 -12.45439 -12.23826 -11.97140 -11.77220 -11.61783 -11.45036 -11.42049 -11.35838 -11.15787 -10.96377 -10.56727 -9.38370 -9.09253 -8.20999 -6.32130 1.39753 1.40183 1.53951 2.40647 2.67563 3.05433 3.12089 3.20678 3.73905 3.79430 3.95114 4.07010 4.08541 4.18888 4.24264 4.30935 4.38583 4.41325 4.53661 4.57782 4.68773 4.72605 4.76275 4.79648 4.85913 4.95382 4.99048 5.07820 5.11300 5.15188 5.21178 5.24479 5.25154 5.38392 5.52087 5.74110 5.85100 6.08851 6.09291 6.15096 6.26871 6.50622 6.85074 7.37283 8.91292 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.068410 B = 0.002930 C = 0.002889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 409.199674 B = 9553.329296 C = 9688.999201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.003 4.003 3 Si 0.967 3.033 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.542 4.542 8 H 0.060 0.940 9 C 0.025 3.975 10 C -0.092 4.092 11 C 0.074 3.926 12 N -0.686 5.686 13 C 0.086 3.914 14 C -0.102 4.102 15 C 0.064 3.936 16 N -0.514 5.514 17 C 0.009 3.991 18 C -0.220 4.220 19 C -0.166 4.166 20 C 0.059 3.941 21 C -0.112 4.112 22 H 0.264 0.736 23 H -0.010 1.010 24 H -0.010 1.010 25 H 0.051 0.949 26 H 0.052 0.948 27 H 0.059 0.941 28 H 0.020 0.980 29 H 0.345 0.655 30 H 0.031 0.969 31 H 0.069 0.931 32 H 0.057 0.943 33 H 0.086 0.914 34 H 0.031 0.969 35 H 0.126 0.874 36 H 0.094 0.906 37 H 0.102 0.898 38 H 0.110 0.890 39 H 0.093 0.907 40 H 0.036 0.964 41 H 0.087 0.913 42 H 0.077 0.923 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.773 -25.171 0.451 25.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.200 4.200 3 Si 0.791 3.209 4 H -0.186 1.186 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.580 4.580 8 H 0.078 0.922 9 C -0.013 4.013 10 C -0.130 4.130 11 C -0.055 4.055 12 N -0.317 5.317 13 C -0.024 4.024 14 C -0.140 4.140 15 C -0.064 4.064 16 N -0.237 5.237 17 C -0.100 4.100 18 C -0.259 4.259 19 C -0.204 4.204 20 C -0.069 4.069 21 C -0.150 4.150 22 H 0.073 0.927 23 H 0.009 0.991 24 H 0.008 0.992 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.077 0.923 28 H 0.038 0.962 29 H 0.164 0.836 30 H 0.049 0.951 31 H 0.087 0.913 32 H 0.075 0.925 33 H 0.105 0.895 34 H 0.050 0.950 35 H 0.144 0.856 36 H 0.113 0.887 37 H 0.120 0.880 38 H 0.128 0.872 39 H 0.111 0.889 40 H 0.054 0.946 41 H 0.105 0.895 42 H 0.095 0.905 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 3.164 -25.014 -0.503 25.219 hybrid contribution -1.098 1.114 1.349 2.065 sum 2.066 -23.901 0.846 24.005 Atomic orbital electron populations 1.70106 1.07835 1.27740 1.51858 1.26016 0.95811 1.03486 0.94723 0.85368 0.79061 0.78601 0.77836 1.18574 1.20297 1.20258 1.21730 0.93558 0.92387 1.50311 0.92217 1.18974 0.94427 0.93190 0.94672 1.21372 0.97986 0.92860 1.00745 1.21849 0.93975 0.90366 0.99306 1.60504 1.19780 1.01150 1.50291 1.21601 0.95441 0.88836 0.96533 1.21534 1.00954 0.95175 0.96374 1.22041 0.93092 0.91148 1.00112 1.61807 1.43197 1.00884 1.17795 1.22784 1.02084 0.87421 0.97741 1.23580 0.99678 1.05242 0.97407 1.23117 0.95467 0.98355 1.03472 1.22139 0.99112 0.97030 0.88634 1.21732 0.99099 0.93097 1.01046 0.92749 0.99123 0.99153 0.93038 0.92909 0.92281 0.96203 0.83635 0.95138 0.91255 0.92478 0.89515 0.95038 0.85608 0.88731 0.87962 0.87174 0.88869 0.94605 0.89458 0.90476 0.90620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.95 13.29 21.45 0.28 -57.67 16 2 C 0.00 -0.17 5.46 84.65 0.46 0.29 16 3 Si 0.97 45.01 29.54 68.60 2.03 47.04 16 4 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 5 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 6 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 7 C -0.54 -31.68 9.11 25.60 0.23 -31.45 16 8 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 9 C 0.03 1.36 4.97 29.85 0.15 1.51 16 10 C -0.09 -3.91 5.41 30.60 0.17 -3.74 16 11 C 0.07 2.64 5.49 86.30 0.47 3.12 16 12 N -0.69 -19.97 6.32 -491.13 -3.10 -23.07 16 13 C 0.09 2.11 2.56 45.00 0.12 2.22 16 14 C -0.10 -2.45 5.59 30.65 0.17 -2.28 16 15 C 0.06 1.28 5.44 86.32 0.47 1.75 16 16 N -0.51 -9.68 4.88 -871.13 -4.25 -13.93 16 17 C 0.01 0.14 6.11 44.92 0.27 0.41 16 18 C -0.22 -2.93 9.58 30.60 0.29 -2.64 16 19 C -0.17 -2.15 9.94 30.60 0.30 -1.84 16 20 C 0.06 1.05 4.12 86.33 0.36 1.40 16 21 C -0.11 -2.21 5.36 30.65 0.16 -2.05 16 22 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 23 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 24 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 25 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 26 H 0.05 2.28 8.14 -2.38 -0.02 2.26 16 27 H 0.06 2.18 7.51 -2.38 -0.02 2.17 16 28 H 0.02 0.71 8.06 -2.39 -0.02 0.69 16 29 H 0.34 9.19 8.36 -89.70 -0.75 8.44 16 30 H 0.03 0.81 7.80 -2.39 -0.02 0.79 16 31 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.06 1.49 7.54 -2.39 -0.02 1.47 16 33 H 0.09 1.54 8.07 -2.39 -0.02 1.52 16 34 H 0.03 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.13 1.72 8.04 -2.39 -0.02 1.70 16 36 H 0.09 1.34 5.97 -2.39 -0.01 1.32 16 37 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.09 1.27 7.23 -2.39 -0.02 1.25 16 40 H 0.04 0.65 7.12 -2.39 -0.02 0.63 16 41 H 0.09 1.36 6.42 -2.39 -0.02 1.35 16 42 H 0.08 1.35 8.14 -2.39 -0.02 1.34 16 43 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 Total: -1.00 -64.40 334.07 -1.20 -65.60 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: 0.21 Total: 15.34 kcal Atomic # 6 Polarization: -36.94 SS G_CDS: 3.63 Total: -33.31 kcal Atomic # 7 Polarization: -87.60 SS G_CDS: -7.06 Total: -94.67 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -64.40 -1.20 -65.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256067813.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.357 kcal (2) G-P(sol) polarization free energy of solvation -64.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds