Wall clock time and date at job start Sun Mar 29 2020 23:33:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50695 * 119.99854 * 2 1 4 4 C 1.53003 * 109.46755 * 125.00153 * 3 2 1 5 5 C 1.50705 * 109.46884 * 180.02562 * 4 3 2 6 6 O 1.21273 * 119.99998 * 359.97438 * 5 4 3 7 7 N 1.34779 * 119.99777 * 180.02562 * 5 4 3 8 8 C 1.46505 * 120.00167 * 359.97438 * 7 5 4 9 9 C 1.46502 * 119.99991 * 180.02562 * 7 5 4 10 10 H 1.09000 * 110.88305 * 3.87092 * 9 7 5 11 11 C 1.55162 * 111.00126 * 239.99692 * 9 7 5 12 12 C 1.54322 * 102.94027 * 206.42059 * 11 9 7 13 13 N 1.47021 * 107.27114 * 22.19464 * 12 11 9 14 14 C 1.36939 * 125.65020 * 180.79294 * 13 12 11 15 15 H 1.07993 * 120.00037 * 174.02304 * 14 13 12 16 16 C 1.38818 * 119.99487 * 354.02227 * 14 13 12 17 17 N 1.31614 * 120.00293 * 6.87900 * 16 14 13 18 18 Si 1.86798 * 119.99584 * 186.87919 * 16 14 13 19 19 H 1.48507 * 109.47032 * 94.98523 * 18 16 14 20 20 H 1.48499 * 109.47306 * 214.98527 * 18 16 14 21 21 H 1.48502 * 109.47533 * 334.99048 * 18 16 14 22 22 C 1.47428 * 108.70438 * 1.05667 * 13 12 11 23 23 H 1.07996 * 120.00107 * 180.02562 * 1 2 3 24 24 H 1.08004 * 119.99789 * 0.02562 * 1 2 3 25 25 H 1.07997 * 119.99785 * 180.02562 * 2 1 3 26 26 H 1.09001 * 109.47591 * 5.00290 * 3 2 1 27 27 H 1.09005 * 109.47247 * 244.99870 * 3 2 1 28 28 H 1.09000 * 109.47344 * 60.00117 * 4 3 2 29 29 H 1.08995 * 109.47527 * 299.99725 * 4 3 2 30 30 H 1.08997 * 109.47011 * 270.00485 * 8 7 5 31 31 H 1.08996 * 109.46649 * 29.99886 * 8 7 5 32 32 H 1.08991 * 109.47194 * 150.00139 * 8 7 5 33 33 H 1.09000 * 110.71739 * 88.05917 * 11 9 7 34 34 H 1.09001 * 110.72194 * 324.78471 * 11 9 7 35 35 H 1.09001 * 109.88364 * 262.77461 * 12 11 9 36 36 H 1.09004 * 109.87812 * 141.60984 * 12 11 9 37 37 H 0.96993 * 119.99943 * 179.97438 * 17 16 14 38 38 H 1.09005 * 110.36351 * 94.71150 * 22 13 12 39 39 H 1.08991 * 110.36864 * 217.03292 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3330 1.1817 5 6 3.7881 2.6384 1.1820 6 8 3.5696 3.4647 0.3217 7 7 4.7052 2.8870 2.1380 8 6 4.9695 1.8885 3.1770 9 6 5.4368 4.1562 2.1387 10 1 5.0768 4.8127 1.3466 11 6 6.9647 3.9174 2.0116 12 6 7.5672 5.1641 2.6930 13 7 6.5399 5.7093 3.5925 14 6 6.6736 6.8270 4.3722 15 1 5.8268 7.2025 4.9273 16 6 7.8976 7.4774 4.4489 17 7 8.8914 7.1035 3.6711 18 14 8.1341 8.8832 5.6559 19 1 8.7324 8.3623 6.9114 20 1 9.0387 9.8996 5.0611 21 1 6.8193 9.5053 5.9553 22 6 5.3443 4.8497 3.5208 23 1 -0.5400 -0.9353 0.0004 24 1 -0.5400 0.9354 -0.0004 25 1 1.8500 -0.9353 -0.0004 26 1 1.3586 2.1317 0.0896 27 1 2.6214 1.4026 -0.9314 28 1 3.7400 0.5065 1.0921 29 1 2.4774 1.2355 2.1130 30 1 4.3062 2.0616 4.0243 31 1 4.7929 0.8908 2.7752 32 1 6.0059 1.9703 3.5042 33 1 7.2616 3.8692 0.9639 34 1 7.2584 3.0098 2.5390 35 1 7.8325 5.9063 1.9401 36 1 8.4504 4.8826 3.2665 37 1 9.7465 7.5582 3.7245 38 1 5.3620 4.1079 4.3194 39 1 4.4389 5.4532 3.5825 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267759797.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:33:49 Heat of formation + Delta-G solvation = -12.589149 kcal Electronic energy + Delta-G solvation = -18678.127496 eV Core-core repulsion = 15814.134191 eV Total energy + Delta-G solvation = -2863.993305 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.17004 -39.06369 -36.35389 -36.16902 -34.10437 -31.80900 -30.93444 -29.15155 -27.76082 -26.59083 -25.08101 -22.08672 -21.78371 -20.63655 -19.92982 -18.95780 -18.23685 -17.15415 -16.89930 -16.65472 -16.00816 -15.73354 -15.32111 -14.75985 -14.35799 -14.25997 -14.02486 -13.82433 -13.66439 -13.50717 -13.16401 -12.94186 -12.83917 -12.74553 -12.34145 -12.09950 -12.03018 -11.93215 -11.86086 -11.82820 -11.49312 -10.81997 -10.73014 -10.17702 -9.63253 -8.92831 -7.88858 -5.25021 1.42786 1.45599 1.47488 1.56661 1.64374 2.01191 2.49323 3.29477 3.55404 3.66601 3.90973 3.96784 4.01690 4.16707 4.19880 4.31041 4.41019 4.49976 4.56018 4.60026 4.68570 4.77561 4.80881 4.92959 4.97764 5.04606 5.11077 5.16021 5.25763 5.41704 5.55957 5.61322 5.69408 5.79374 5.95821 6.15591 6.47568 7.05940 7.20011 7.71987 8.36598 9.21913 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.053014 B = 0.003967 C = 0.003907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.036174 B = 7056.217373 C = 7165.636154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.155 4.155 3 C -0.080 4.080 4 C -0.120 4.120 5 C 0.503 3.497 6 O -0.595 6.595 7 N -0.602 5.602 8 C 0.068 3.932 9 C 0.136 3.864 10 H 0.075 0.925 11 C -0.133 4.133 12 C 0.187 3.813 13 N -0.626 5.626 14 C -0.248 4.248 15 H 0.082 0.918 16 C -0.063 4.063 17 N -0.949 5.949 18 Si 0.981 3.019 19 H -0.283 1.283 20 H -0.295 1.295 21 H -0.269 1.269 22 C 0.133 3.867 23 H 0.113 0.887 24 H 0.089 0.911 25 H 0.130 0.870 26 H 0.053 0.947 27 H 0.064 0.936 28 H 0.126 0.874 29 H 0.116 0.884 30 H 0.069 0.931 31 H 0.109 0.891 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.088 0.912 35 H 0.004 0.996 36 H 0.020 0.980 37 H 0.249 0.751 38 H 0.044 0.956 39 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.845 -18.083 -2.756 21.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.172 4.172 3 C -0.118 4.118 4 C -0.159 4.159 5 C 0.293 3.707 6 O -0.476 6.476 7 N -0.334 5.334 8 C -0.074 4.074 9 C 0.031 3.969 10 H 0.093 0.907 11 C -0.172 4.172 12 C 0.062 3.938 13 N -0.353 5.353 14 C -0.376 4.376 15 H 0.100 0.900 16 C -0.256 4.256 17 N -0.598 5.598 18 Si 0.809 3.191 19 H -0.210 1.210 20 H -0.221 1.221 21 H -0.193 1.193 22 C 0.007 3.993 23 H 0.132 0.868 24 H 0.107 0.893 25 H 0.148 0.852 26 H 0.072 0.928 27 H 0.083 0.917 28 H 0.143 0.857 29 H 0.134 0.866 30 H 0.087 0.913 31 H 0.127 0.873 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.107 0.893 35 H 0.023 0.977 36 H 0.039 0.961 37 H 0.058 0.942 38 H 0.062 0.938 39 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -11.818 -17.519 -3.132 21.363 hybrid contribution 0.585 1.376 0.438 1.558 sum -11.233 -16.143 -2.695 19.850 Atomic orbital electron populations 1.24044 0.96124 1.02398 1.00768 1.22984 0.96115 0.97961 1.00179 1.20472 0.97637 0.95920 0.97798 1.21680 0.98891 0.93548 1.01805 1.21629 0.79066 0.90105 0.79859 1.90671 1.67245 1.50404 1.39261 1.47901 1.38990 1.17366 1.29095 1.22105 1.02842 0.91784 0.90623 1.21906 0.91748 0.85564 0.97689 0.90713 1.23036 0.94331 0.98996 1.00860 1.20891 0.90737 0.91175 0.90999 1.44681 1.12640 1.28313 1.49649 1.19448 0.95886 1.02453 1.19855 0.90035 1.25704 0.95777 1.02732 1.01422 1.70186 1.03400 1.44832 1.41333 0.85027 0.77708 0.78108 0.78272 1.20978 1.22122 1.19332 1.21842 0.89439 0.93034 0.94961 0.86838 0.89263 0.85239 0.92796 0.91706 0.85653 0.86569 0.91258 0.87271 0.90941 0.91092 0.89331 0.97732 0.96146 0.94215 0.93814 0.95050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.64 14.32 67.77 0.97 -1.67 16 2 C -0.15 -2.13 9.52 25.64 0.24 -1.89 16 3 C -0.08 -1.53 4.95 29.85 0.15 -1.38 16 4 C -0.12 -2.02 4.23 29.85 0.13 -1.89 16 5 C 0.50 14.22 7.67 87.66 0.67 14.89 16 6 O -0.59 -22.82 15.36 -3.01 -0.05 -22.87 16 7 N -0.60 -16.84 2.91 -814.83 -2.37 -19.21 16 8 C 0.07 1.24 8.85 127.77 1.13 2.38 16 9 C 0.14 5.12 3.45 46.38 0.16 5.28 16 10 H 0.07 3.29 7.02 -2.39 -0.02 3.27 16 11 C -0.13 -5.04 6.51 31.78 0.21 -4.83 16 12 C 0.19 9.49 5.38 86.73 0.47 9.96 16 13 N -0.63 -33.11 3.39 -691.99 -2.35 -35.46 16 14 C -0.25 -14.21 10.26 84.03 0.86 -13.35 16 15 H 0.08 4.49 7.84 -2.91 -0.02 4.46 16 16 C -0.06 -3.64 5.48 84.86 0.47 -3.18 16 17 N -0.95 -57.84 10.36 21.65 0.22 -57.62 16 18 Si 0.98 46.23 29.56 68.60 2.03 48.25 16 19 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 20 H -0.29 -13.95 7.11 99.48 0.71 -13.25 16 21 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 22 C 0.13 5.62 6.79 86.85 0.59 6.21 16 23 H 0.11 1.13 8.06 -2.91 -0.02 1.10 16 24 H 0.09 1.31 7.84 -2.91 -0.02 1.29 16 25 H 0.13 1.25 8.06 -2.91 -0.02 1.23 16 26 H 0.05 1.23 7.75 -2.39 -0.02 1.21 16 27 H 0.06 1.41 8.10 -2.38 -0.02 1.39 16 28 H 0.13 1.35 7.40 -2.39 -0.02 1.34 16 29 H 0.12 1.49 8.11 -2.39 -0.02 1.47 16 30 H 0.07 1.15 8.09 -2.39 -0.02 1.13 16 31 H 0.11 1.14 6.44 -2.39 -0.02 1.12 16 32 H 0.07 1.46 6.42 -2.39 -0.02 1.44 16 33 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 34 H 0.09 2.87 6.40 -2.39 -0.02 2.85 16 35 H 0.00 0.25 7.55 -2.39 -0.02 0.24 16 36 H 0.02 1.13 7.36 -2.39 -0.02 1.11 16 37 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 38 H 0.04 1.68 7.00 -2.38 -0.02 1.67 16 39 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -73.67 314.35 4.54 -69.13 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: 1.01 Total: 7.25 kcal Atomic # 6 Polarization: 4.47 SS G_CDS: 6.04 Total: 10.51 kcal Atomic # 7 Polarization: -107.78 SS G_CDS: -4.50 Total: -112.28 kcal Atomic # 8 Polarization: -22.82 SS G_CDS: -0.05 Total: -22.87 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 2.03 Total: 48.25 kcal Total: -73.67 4.54 -69.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267759797.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.545 kcal (2) G-P(sol) polarization free energy of solvation -73.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds