Wall clock time and date at job start Sun Mar 29 2020 23:05:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.48634 * 111.00219 * 2 1 4 4 C 1.55203 * 103.41044 * 200.90515 * 3 2 1 5 5 C 1.53485 * 102.57450 * 36.42634 * 4 3 2 6 6 C 1.52287 * 116.13615 * 207.23708 * 5 4 3 7 7 N 1.47292 * 87.74374 * 218.28288 * 6 5 4 8 8 C 1.34780 * 135.91452 * 206.06398 * 7 6 5 9 9 O 1.21283 * 119.99778 * 359.97438 * 8 7 6 10 10 C 1.50695 * 120.00137 * 180.02562 * 8 7 6 11 11 C 1.53000 * 109.47432 * 179.97438 * 10 8 7 12 12 C 1.50701 * 109.47394 * 179.97438 * 11 10 8 13 13 H 1.08001 * 119.99822 * 0.02562 * 12 11 10 14 14 C 1.37871 * 120.00294 * 179.97438 * 12 11 10 15 15 N 1.31519 * 119.99926 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 120.00298 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.46871 * 90.00038 * 16 14 12 18 18 H 1.48497 * 109.47250 * 210.00378 * 16 14 12 19 19 H 1.48505 * 109.47064 * 330.00426 * 16 14 12 20 20 C 1.47278 * 88.16634 * 26.06621 * 7 6 5 21 21 C 1.48240 * 111.00003 * 242.51477 * 2 1 3 22 22 H 1.09003 * 109.46868 * 177.48236 * 1 2 3 23 23 H 1.09002 * 109.47451 * 297.48052 * 1 2 3 24 24 H 1.08994 * 109.47137 * 57.48803 * 1 2 3 25 25 H 1.09005 * 110.63281 * 319.38808 * 3 2 1 26 26 H 1.09002 * 110.63550 * 82.25896 * 3 2 1 27 27 H 1.09000 * 110.78761 * 278.16115 * 4 3 2 28 28 H 1.08997 * 110.78887 * 154.69986 * 4 3 2 29 29 H 1.09002 * 113.51866 * 103.54692 * 6 5 4 30 30 H 1.08995 * 113.51917 * 333.01658 * 6 5 4 31 31 H 1.09000 * 109.47022 * 300.00201 * 10 8 7 32 32 H 1.09001 * 109.47172 * 59.99593 * 10 8 7 33 33 H 1.09000 * 109.47391 * 300.00232 * 11 10 8 34 34 H 1.09004 * 109.46548 * 60.00312 * 11 10 8 35 35 H 0.96994 * 119.99845 * 179.97438 * 15 14 12 36 36 H 1.08997 * 113.52274 * 88.60511 * 20 7 6 37 37 H 1.09008 * 113.51763 * 219.14114 * 20 7 6 38 38 H 1.09001 * 110.04020 * 26.37705 * 21 2 1 39 39 H 1.08996 * 110.04072 * 264.92097 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0017 1.3876 0.0000 4 6 3.4473 1.2182 -0.5387 5 6 3.2858 0.1073 -1.5854 6 6 4.5172 -0.7486 -1.8507 7 7 4.1378 -0.7502 -3.2739 8 6 4.3376 -1.5657 -4.3282 9 8 4.9776 -2.5869 -4.1922 10 6 3.7668 -1.2081 -5.6763 11 6 4.1366 -2.2921 -6.6906 12 6 3.5653 -1.9348 -8.0386 13 1 2.9958 -1.0252 -8.1597 14 6 3.7705 -2.7685 -9.1173 15 7 4.4645 -3.8760 -8.9699 16 14 3.0629 -2.3252 -10.7883 17 1 4.0501 -1.5134 -11.5442 18 1 2.7616 -3.5677 -11.5437 19 1 1.8145 -1.5421 -10.6053 20 6 3.4447 0.5284 -3.0418 21 6 2.0002 -0.6387 -1.2277 22 1 -0.3633 -1.0267 -0.0451 23 1 -0.3634 0.4742 0.9117 24 1 -0.3633 0.5523 -0.8666 25 1 1.4164 2.0237 -0.6640 26 1 2.0111 1.7955 1.0108 27 1 4.1225 0.9043 0.2574 28 1 3.7974 2.1398 -1.0035 29 1 4.4702 -1.7339 -1.3869 30 1 5.4565 -0.2329 -1.6515 31 1 2.6819 -1.1332 -5.6032 32 1 4.1758 -0.2516 -6.0019 33 1 5.2216 -2.3666 -6.7636 34 1 3.7278 -3.2488 -6.3651 35 1 4.6085 -4.4626 -9.7287 36 1 4.0850 1.4006 -3.1739 37 1 2.4991 0.6142 -3.5773 38 1 1.2776 -0.5478 -2.0387 39 1 2.2187 -1.6895 -1.0375 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271253237.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:05:33 Heat of formation + Delta-G solvation = -24.110167 kcal Electronic energy + Delta-G solvation = -18568.909139 eV Core-core repulsion = 15704.416246 eV Total energy + Delta-G solvation = -2864.492894 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.03138 -39.84820 -37.78315 -35.60093 -33.23622 -32.50180 -30.20095 -28.46881 -27.42631 -26.92100 -25.24153 -23.21144 -22.20500 -20.49103 -19.58852 -18.78103 -17.62031 -17.18986 -16.87730 -16.50713 -16.22529 -16.13969 -15.48771 -15.09607 -14.59631 -14.24242 -14.17059 -14.05396 -13.79745 -13.29823 -13.18184 -12.84076 -12.78050 -12.48927 -12.40709 -12.34641 -12.09880 -11.98594 -11.95984 -11.68989 -11.33700 -11.27903 -10.69599 -10.59448 -9.75629 -9.39546 -8.20177 -6.35193 1.40689 1.44091 1.54989 1.62451 1.85479 2.41461 3.00191 3.12581 3.16219 3.46983 3.67150 3.86339 4.03171 4.34881 4.36583 4.43061 4.45997 4.47544 4.48262 4.54917 4.60654 4.63795 4.71543 4.84545 4.87632 4.90985 5.01818 5.05132 5.09973 5.20688 5.25372 5.45555 5.57085 5.81020 5.87210 6.07146 6.13707 6.67703 6.83642 7.19303 7.35406 8.92786 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.034313 B = 0.004043 C = 0.003858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.812963 B = 6923.246865 C = 7255.706082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.537 5.537 3 C 0.033 3.967 4 C -0.097 4.097 5 C -0.094 4.094 6 C 0.110 3.890 7 N -0.657 5.657 8 C 0.535 3.465 9 O -0.594 6.594 10 C -0.108 4.108 11 C 0.043 3.957 12 C -0.544 4.544 13 H 0.076 0.924 14 C -0.007 4.007 15 N -0.938 5.938 16 Si 0.977 3.023 17 H -0.270 1.270 18 H -0.285 1.285 19 H -0.255 1.255 20 C 0.114 3.886 21 C 0.062 3.938 22 H 0.062 0.938 23 H 0.082 0.918 24 H 0.033 0.967 25 H 0.055 0.945 26 H 0.095 0.905 27 H 0.088 0.912 28 H 0.104 0.896 29 H 0.060 0.940 30 H 0.105 0.895 31 H 0.097 0.903 32 H 0.101 0.899 33 H -0.018 1.018 34 H -0.019 1.019 35 H 0.264 0.736 36 H 0.117 0.883 37 H 0.086 0.914 38 H 0.049 0.951 39 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.228 16.671 19.119 26.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.261 5.261 3 C -0.094 4.094 4 C -0.135 4.135 5 C -0.095 4.095 6 C -0.012 4.012 7 N -0.392 5.392 8 C 0.327 3.673 9 O -0.475 6.475 10 C -0.147 4.147 11 C 0.005 3.995 12 C -0.582 4.582 13 H 0.094 0.906 14 C -0.204 4.204 15 N -0.578 5.578 16 Si 0.800 3.200 17 H -0.196 1.196 18 H -0.211 1.211 19 H -0.178 1.178 20 C -0.007 4.007 21 C -0.066 4.066 22 H 0.081 0.919 23 H 0.101 0.899 24 H 0.051 0.949 25 H 0.073 0.927 26 H 0.114 0.886 27 H 0.106 0.894 28 H 0.122 0.878 29 H 0.079 0.921 30 H 0.123 0.877 31 H 0.116 0.884 32 H 0.119 0.881 33 H 0.000 1.000 34 H -0.001 1.001 35 H 0.072 0.928 36 H 0.135 0.865 37 H 0.104 0.896 38 H 0.067 0.933 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -6.664 15.557 19.390 25.737 hybrid contribution -0.262 -0.380 -1.684 1.746 sum -6.926 15.177 17.706 24.327 Atomic orbital electron populations 1.22549 0.87034 1.02118 1.01704 1.64862 1.09055 1.16363 1.35855 1.23399 0.94947 0.88848 1.02195 1.22314 0.97090 0.97226 0.96903 1.22095 0.94580 0.97245 0.95603 1.23075 0.98725 1.00183 0.79236 1.49924 1.55467 1.24158 1.09664 1.20975 0.78611 0.82027 0.85696 1.90651 1.43359 1.28312 1.85179 1.21533 1.01987 1.01541 0.89688 1.18697 0.94737 0.92859 0.93201 1.21678 1.34153 1.07909 0.94478 0.90598 1.26171 0.95454 0.94634 1.04169 1.70187 1.41411 1.13618 1.32584 0.85277 0.79187 0.77720 0.77788 1.19550 1.21079 1.17849 1.23332 0.98009 0.86382 0.93015 1.22404 0.94330 0.98447 0.91439 0.91918 0.89883 0.94889 0.92678 0.88649 0.89379 0.87807 0.92139 0.87722 0.88433 0.88082 0.99964 1.00085 0.92771 0.86532 0.89557 0.93315 0.91877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.21 9.40 127.69 1.20 1.41 16 2 N -0.54 -9.06 5.56 -909.66 -5.06 -14.13 16 3 C 0.03 0.38 6.58 86.72 0.57 0.95 16 4 C -0.10 -1.04 6.50 31.51 0.20 -0.83 16 5 C -0.09 -1.60 1.22 -52.48 -0.06 -1.67 16 6 C 0.11 2.56 7.91 83.52 0.66 3.22 16 7 N -0.66 -19.73 3.69 -857.59 -3.16 -22.90 16 8 C 0.53 22.72 8.08 87.65 0.71 23.43 16 9 O -0.59 -31.78 16.76 -3.04 -0.05 -31.83 16 10 C -0.11 -4.63 5.46 29.85 0.16 -4.47 16 11 C 0.04 2.48 4.26 29.85 0.13 2.60 16 12 C -0.54 -31.71 9.11 25.60 0.23 -31.48 16 13 H 0.08 4.01 7.74 -2.91 -0.02 3.99 16 14 C -0.01 -0.40 5.46 84.65 0.46 0.06 16 15 N -0.94 -60.54 13.29 21.45 0.28 -60.26 16 16 Si 0.98 44.72 29.54 68.60 2.03 46.75 16 17 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 18 H -0.29 -12.90 7.11 99.48 0.71 -12.20 16 19 H -0.25 -10.79 7.11 99.48 0.71 -10.08 16 20 C 0.11 2.13 7.69 83.57 0.64 2.77 16 21 C 0.06 1.23 6.26 86.00 0.54 1.77 16 22 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 23 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 24 H 0.03 0.44 8.01 -2.39 -0.02 0.42 16 25 H 0.05 0.56 7.95 -2.38 -0.02 0.54 16 26 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.09 0.92 8.13 -2.39 -0.02 0.90 16 28 H 0.10 0.66 7.87 -2.39 -0.02 0.65 16 29 H 0.06 1.63 7.92 -2.39 -0.02 1.61 16 30 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.10 3.75 8.14 -2.39 -0.02 3.73 16 32 H 0.10 3.84 8.14 -2.39 -0.02 3.82 16 33 H -0.02 -1.18 8.10 -2.39 -0.02 -1.20 16 34 H -0.02 -1.26 8.10 -2.38 -0.02 -1.28 16 35 H 0.26 15.86 8.31 -92.71 -0.77 15.09 16 36 H 0.12 1.55 8.00 -2.39 -0.02 1.53 16 37 H 0.09 1.52 7.93 -2.38 -0.02 1.50 16 38 H 0.05 1.01 7.43 -2.39 -0.02 0.99 16 39 H 0.06 1.53 7.81 -2.39 -0.02 1.51 16 Total: -1.00 -80.01 320.23 0.49 -79.52 By element: Atomic # 1 Polarization: 4.06 SS G_CDS: 1.00 Total: 5.07 kcal Atomic # 6 Polarization: -7.68 SS G_CDS: 5.45 Total: -2.23 kcal Atomic # 7 Polarization: -89.34 SS G_CDS: -7.94 Total: -97.28 kcal Atomic # 8 Polarization: -31.78 SS G_CDS: -0.05 Total: -31.83 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -80.01 0.49 -79.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271253237.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.414 kcal (2) G-P(sol) polarization free energy of solvation -80.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds