Wall clock time and date at job start Sun Mar 29 2020 23:05:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.48730 * 111.00314 * 2 1 4 4 C 1.55001 * 103.35621 * 158.81723 * 3 2 1 5 5 C 1.54802 * 102.93952 * 323.04037 * 4 3 2 6 6 C 1.47082 * 110.99923 * 117.15228 * 2 1 3 7 7 C 1.53861 * 110.71293 * 93.71855 * 6 2 1 8 8 C 1.54820 * 101.50937 * 215.39298 * 7 6 2 9 9 N 1.46849 * 105.41508 * 25.09533 * 8 7 6 10 10 C 1.46504 * 124.36607 * 163.00568 * 9 8 7 11 11 C 1.53006 * 109.46883 * 269.72089 * 10 9 8 12 12 C 1.50698 * 109.47184 * 179.97438 * 11 10 9 13 13 H 1.08005 * 119.99819 * 0.02562 * 12 11 10 14 14 C 1.37875 * 120.00046 * 179.97438 * 12 11 10 15 15 N 1.31512 * 119.99933 * 180.02562 * 14 12 11 16 16 Si 1.86799 * 119.99912 * 0.02562 * 14 12 11 17 17 H 1.48497 * 109.47017 * 89.99937 * 16 14 12 18 18 H 1.48507 * 109.47241 * 209.99826 * 16 14 12 19 19 H 1.48500 * 109.47209 * 329.99791 * 16 14 12 20 20 C 1.34664 * 111.26440 * 342.73364 * 9 8 7 21 21 O 1.21273 * 125.08155 * 181.08542 * 20 9 8 22 22 H 1.09004 * 109.47045 * 302.84689 * 1 2 3 23 23 H 1.08999 * 109.47344 * 62.84589 * 1 2 3 24 24 H 1.09002 * 109.47518 * 182.84977 * 1 2 3 25 25 H 1.09002 * 110.64316 * 40.34943 * 3 2 1 26 26 H 1.08994 * 110.78153 * 277.35044 * 3 2 1 27 27 H 1.09000 * 110.72023 * 204.67969 * 4 3 2 28 28 H 1.08996 * 110.87308 * 81.47354 * 4 3 2 29 29 H 1.08994 * 110.37224 * 263.05532 * 5 4 3 30 30 H 1.09003 * 110.36451 * 140.72966 * 5 4 3 31 31 H 1.09001 * 111.00251 * 333.68962 * 7 6 2 32 32 H 1.09007 * 111.00288 * 97.52788 * 7 6 2 33 33 H 1.09007 * 110.38978 * 266.06099 * 8 7 6 34 34 H 1.08999 * 110.17412 * 144.02129 * 8 7 6 35 35 H 1.09001 * 109.46891 * 149.72523 * 10 9 8 36 36 H 1.08993 * 109.47378 * 29.71895 * 10 9 8 37 37 H 1.09001 * 109.46801 * 300.00349 * 11 10 9 38 38 H 1.09001 * 109.46998 * 59.99945 * 11 10 9 39 39 H 0.97007 * 120.00011 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 2.0020 1.3885 0.0000 4 6 3.4431 1.2187 0.5449 5 6 3.2814 0.1102 1.6133 6 6 1.9960 -0.6266 1.2218 7 6 2.2782 -2.1211 0.9887 8 6 1.9043 -2.7243 2.3647 9 7 0.9420 -1.7848 2.9543 10 6 0.0535 -2.1051 4.0742 11 6 -1.2667 -2.6601 3.5353 12 6 -2.1804 -2.9902 4.6872 13 1 -1.8526 -2.8207 5.7023 14 6 -3.4353 -3.5076 4.4454 15 7 -4.2329 -3.7952 5.4507 16 14 -4.0026 -3.8000 2.6898 17 1 -3.6271 -5.1742 2.2707 18 1 -5.4776 -3.6449 2.6138 19 1 -3.3541 -2.8132 1.7892 20 6 0.9857 -0.5890 2.3366 21 8 0.3112 0.3741 2.6337 22 1 -0.3633 0.5574 0.8634 23 1 -0.3634 0.4690 -0.9144 24 1 -0.3634 -1.0264 0.0511 25 1 1.4140 2.0259 0.6604 26 1 2.0189 1.7962 -1.0107 27 1 3.7948 2.1446 1.0001 28 1 4.1216 0.8970 -0.2450 29 1 3.1792 0.5509 2.6049 30 1 4.1324 -0.5704 1.5855 31 1 1.6434 -2.5197 0.1973 32 1 3.3315 -2.2895 0.7644 33 1 2.7886 -2.8048 2.9970 34 1 1.4435 -3.7033 2.2332 35 1 -0.1413 -1.2024 4.6532 36 1 0.5275 -2.8509 4.7123 37 1 -1.7407 -1.9143 2.8971 38 1 -1.0719 -3.5628 2.9562 39 1 -5.1157 -4.1595 5.2806 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273516699.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:05:56 Heat of formation + Delta-G solvation = -21.406672 kcal Electronic energy + Delta-G solvation = -19701.417473 eV Core-core repulsion = 16837.041812 eV Total energy + Delta-G solvation = -2864.375662 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.22065 -37.56483 -36.25152 -33.67610 -32.26054 -31.91897 -29.50766 -27.79018 -25.67541 -25.19980 -23.32822 -21.68287 -21.25996 -20.22290 -18.69643 -17.08852 -16.28871 -16.15069 -15.34705 -15.12524 -14.83717 -14.40738 -14.27676 -13.70742 -13.18133 -12.98184 -12.93990 -12.73560 -12.44202 -12.09819 -11.92296 -11.77648 -11.56160 -11.22705 -11.15624 -11.06744 -10.99769 -10.65811 -10.45032 -10.06767 -9.99544 -9.77991 -9.30775 -8.58308 -8.38569 -8.04881 -6.09057 -4.08235 2.77971 3.27650 3.35915 3.39749 3.41383 3.89454 4.34225 4.40241 4.41987 4.57918 4.81183 5.01010 5.08108 5.13620 5.25187 5.39338 5.51027 5.57365 5.64222 5.69620 5.72264 5.75629 5.81365 5.86275 6.00747 6.02642 6.04685 6.20511 6.27956 6.55813 6.78600 6.80210 6.90401 7.12207 7.30480 7.57797 7.72091 8.43586 8.50257 8.93726 9.52843 11.04012 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.032735 B = 0.006073 C = 0.005767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.140024 B = 4609.670835 C = 4853.663458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.015 4.015 2 N -0.490 5.490 3 C 0.029 3.971 4 C -0.120 4.120 5 C -0.108 4.108 6 C 0.057 3.943 7 C -0.112 4.112 8 C 0.097 3.903 9 N -0.611 5.611 10 C 0.135 3.865 11 C -0.023 4.023 12 C -0.522 4.522 13 H 0.074 0.926 14 C 0.071 3.929 15 N -0.900 5.900 16 Si 0.879 3.121 17 H -0.277 1.277 18 H -0.286 1.286 19 H -0.266 1.266 20 C 0.502 3.498 21 O -0.528 6.528 22 H 0.070 0.930 23 H 0.067 0.933 24 H 0.065 0.935 25 H 0.055 0.945 26 H 0.083 0.917 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.090 0.910 33 H 0.070 0.930 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.019 0.981 38 H 0.012 0.988 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.057 5.481 -11.498 21.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 N -0.213 5.213 3 C -0.099 4.099 4 C -0.158 4.158 5 C -0.147 4.147 6 C -0.037 4.037 7 C -0.150 4.150 8 C -0.027 4.027 9 N -0.343 5.343 10 C 0.015 3.985 11 C -0.061 4.061 12 C -0.560 4.560 13 H 0.092 0.908 14 C -0.131 4.131 15 N -0.539 5.539 16 Si 0.706 3.294 17 H -0.202 1.202 18 H -0.212 1.212 19 H -0.191 1.191 20 C 0.287 3.713 21 O -0.405 6.405 22 H 0.089 0.911 23 H 0.086 0.914 24 H 0.084 0.916 25 H 0.073 0.927 26 H 0.101 0.899 27 H 0.091 0.909 28 H 0.094 0.906 29 H 0.090 0.910 30 H 0.100 0.900 31 H 0.106 0.894 32 H 0.109 0.891 33 H 0.088 0.912 34 H 0.100 0.900 35 H 0.094 0.906 36 H 0.091 0.909 37 H 0.037 0.963 38 H 0.031 0.969 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 16.607 5.597 -11.684 21.063 hybrid contribution -0.899 0.016 -0.123 0.907 sum 15.708 5.613 -11.807 20.437 Atomic orbital electron populations 1.22977 0.87193 1.03014 1.03106 1.64961 1.09200 1.15091 1.32055 1.23344 0.95011 0.90255 1.01243 1.22507 0.96810 0.98378 0.98099 1.22266 0.95110 0.97708 0.99579 1.22118 0.95070 0.96957 0.89550 1.22642 1.03016 0.92400 0.96956 1.22205 0.92545 0.94259 0.93662 1.48683 1.38375 1.12645 1.34644 1.21608 0.90187 1.00725 0.86006 1.19877 0.92733 0.95773 0.97708 1.20953 0.98923 1.42749 0.93399 0.90802 1.24966 0.96412 0.94775 0.96954 1.69904 1.08995 1.44162 1.30822 0.86782 0.77903 0.78944 0.85729 1.20232 1.21214 1.19092 1.21043 0.83650 0.82981 0.83607 1.90634 1.46445 1.35790 1.67660 0.91136 0.91385 0.91569 0.92669 0.89911 0.90888 0.90571 0.91045 0.89960 0.89414 0.89139 0.91182 0.90030 0.90600 0.90910 0.96270 0.96936 0.92613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.23 8.56 60.06 0.51 0.28 16 2 N -0.49 -6.72 5.20 -224.95 -1.17 -7.90 16 3 C 0.03 0.34 6.58 -1.75 -0.01 0.33 16 4 C -0.12 -1.16 7.08 -24.72 -0.17 -1.33 16 5 C -0.11 -1.19 6.24 -25.66 -0.16 -1.35 16 6 C 0.06 0.77 0.76 -132.18 -0.10 0.67 16 7 C -0.11 -1.27 6.40 -25.32 -0.16 -1.44 16 8 C 0.10 1.24 7.37 -2.89 -0.02 1.22 16 9 N -0.61 -10.66 2.94 -172.39 -0.51 -11.17 16 10 C 0.13 2.77 5.88 -4.04 -0.02 2.74 16 11 C -0.02 -0.55 4.36 -27.88 -0.12 -0.68 16 12 C -0.52 -15.00 9.66 -34.44 -0.33 -15.33 16 13 H 0.07 2.25 7.99 -52.48 -0.42 1.83 16 14 C 0.07 2.08 5.47 -17.82 -0.10 1.99 16 15 N -0.90 -27.92 13.96 55.43 0.77 -27.15 16 16 Si 0.88 22.19 27.47 -169.99 -4.67 17.52 16 17 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 18 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 19 H -0.27 -6.64 6.54 56.52 0.37 -6.27 16 20 C 0.50 9.01 5.44 -11.14 -0.06 8.95 16 21 O -0.53 -11.41 15.10 5.56 0.08 -11.32 16 22 H 0.07 1.30 5.15 -51.93 -0.27 1.03 16 23 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 24 H 0.07 1.09 8.11 -51.93 -0.42 0.67 16 25 H 0.05 0.75 7.95 -51.93 -0.41 0.34 16 26 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 27 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.07 0.87 7.73 -51.93 -0.40 0.47 16 30 H 0.08 0.71 7.29 -51.93 -0.38 0.33 16 31 H 0.09 1.05 8.10 -51.93 -0.42 0.63 16 32 H 0.09 0.77 7.41 -51.93 -0.38 0.38 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.08 1.67 7.93 -51.93 -0.41 1.26 16 36 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 37 H 0.02 0.50 7.20 -51.93 -0.37 0.13 16 38 H 0.01 0.30 7.57 -51.93 -0.39 -0.10 16 39 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 306.96 15.07 4.63 4.63 Total: -1.00 -33.21 306.96 -8.03 -41.23 By element: Atomic # 1 Polarization: 4.51 SS G_CDS: -6.41 Total: -1.90 kcal Atomic # 6 Polarization: -3.19 SS G_CDS: -0.75 Total: -3.94 kcal Atomic # 7 Polarization: -45.31 SS G_CDS: -0.90 Total: -46.21 kcal Atomic # 8 Polarization: -11.41 SS G_CDS: 0.08 Total: -11.32 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -4.67 Total: 17.52 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -33.21 -8.03 -41.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273516699.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.825 kcal (2) G-P(sol) polarization free energy of solvation -33.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds