Wall clock time and date at job start Sun Mar 29 2020 23:05:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.48655 * 110.99734 * 2 1 4 4 C 1.54639 * 104.63456 * 201.49577 * 3 2 1 5 5 C 1.53254 * 104.67397 * 23.67995 * 4 3 2 6 6 C 1.53621 * 111.05360 * 239.01401 * 5 4 3 7 7 C 1.54695 * 101.51240 * 262.69122 * 6 5 4 8 8 N 1.46890 * 105.51765 * 335.47228 * 7 6 5 9 9 C 1.46496 * 124.37028 * 196.82074 * 8 7 6 10 10 C 1.52998 * 109.46847 * 90.00513 * 9 8 7 11 11 C 1.50706 * 109.47348 * 179.97438 * 10 9 8 12 12 H 1.08005 * 119.99758 * 359.97438 * 11 10 9 13 13 C 1.37871 * 120.00102 * 179.97438 * 11 10 9 14 14 N 1.31516 * 120.00217 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99766 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47057 * 179.97438 * 15 13 11 17 17 H 1.48500 * 109.47389 * 300.00068 * 15 13 11 18 18 H 1.48504 * 109.47102 * 60.00417 * 15 13 11 19 19 C 1.34753 * 111.25381 * 17.09270 * 8 7 6 20 20 O 1.21280 * 125.13577 * 178.70723 * 19 8 7 21 21 C 1.48804 * 110.99622 * 244.38947 * 2 1 3 22 22 H 1.08994 * 109.47172 * 60.12403 * 1 2 3 23 23 H 1.09005 * 109.46949 * 180.12527 * 1 2 3 24 24 H 1.08998 * 109.46786 * 300.12502 * 1 2 3 25 25 H 1.08994 * 110.40302 * 82.70446 * 3 2 1 26 26 H 1.08999 * 110.50450 * 320.33201 * 3 2 1 27 27 H 1.09006 * 110.39270 * 264.89002 * 4 3 2 28 28 H 1.08994 * 110.49626 * 142.53021 * 4 3 2 29 29 H 1.09000 * 111.01457 * 144.63005 * 6 5 4 30 30 H 1.08999 * 111.01447 * 20.75456 * 6 5 4 31 31 H 1.09000 * 110.24062 * 216.46577 * 7 6 5 32 32 H 1.08996 * 110.30894 * 94.51961 * 7 6 5 33 33 H 1.09000 * 109.47627 * 330.00539 * 9 8 7 34 34 H 1.09002 * 109.46983 * 209.99935 * 9 8 7 35 35 H 1.09001 * 109.47671 * 59.99931 * 10 9 8 36 36 H 1.09006 * 109.47297 * 299.99651 * 10 9 8 37 37 H 0.97001 * 119.99646 * 359.97438 * 14 13 11 38 38 H 1.09000 * 110.46322 * 39.47829 * 21 2 1 39 39 H 1.08998 * 110.45504 * 276.90686 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0017 1.3878 0.0000 4 6 3.4414 1.2538 -0.5483 5 6 3.4264 -0.0425 -1.3656 6 6 4.4555 -1.0473 -0.8258 7 6 5.6514 -0.8054 -1.7768 8 7 5.0695 -0.2533 -3.0073 9 6 5.7616 -0.1990 -4.2974 10 6 5.4781 -1.4813 -5.0824 11 6 6.1895 -1.4254 -6.4099 12 1 6.7839 -0.5613 -6.6679 13 6 6.0814 -2.4771 -7.2948 14 7 5.3571 -3.5290 -6.9808 15 14 6.9626 -2.4073 -8.9404 16 1 6.6886 -3.6525 -9.7018 17 1 6.4757 -1.2365 -9.7134 18 1 8.4245 -2.2777 -8.7140 19 6 3.8192 0.2022 -2.7949 20 8 3.1162 0.7278 -3.6318 21 6 2.0022 -0.6005 -1.2528 22 1 -0.3633 0.5119 -0.8910 23 1 -0.3633 -1.0277 0.0022 24 1 -0.3633 0.5158 0.8889 25 1 2.0168 1.7891 1.0133 26 1 1.4048 2.0259 -0.6517 27 1 4.1548 1.1771 0.2724 28 1 3.6873 2.1024 -1.1864 29 1 4.0870 -2.0694 -0.9132 30 1 4.7231 -0.8168 0.2054 31 1 6.1604 -1.7455 -1.9893 32 1 6.3472 -0.0918 -1.3356 33 1 6.8346 -0.1049 -4.1305 34 1 5.4052 0.6606 -4.8650 35 1 4.4051 -1.5756 -5.2494 36 1 5.8344 -2.3411 -4.5149 37 1 4.8993 -3.5650 -6.1264 38 1 1.4028 -0.2909 -2.1089 39 1 2.0240 -1.6875 -1.1749 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273517951.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:05:27 Heat of formation + Delta-G solvation = -36.191718 kcal Electronic energy + Delta-G solvation = -19178.611393 eV Core-core repulsion = 16313.594604 eV Total energy + Delta-G solvation = -2865.016789 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.94801 -37.98346 -36.08401 -34.23625 -32.69737 -30.61013 -29.08964 -28.05140 -26.04970 -24.50683 -23.24885 -21.99356 -21.42164 -20.38481 -18.68031 -16.88642 -16.35383 -15.90247 -15.76011 -15.16281 -14.60440 -14.27132 -13.90972 -13.71806 -13.46314 -13.09033 -12.87768 -12.76400 -12.51453 -12.41463 -11.85578 -11.63488 -11.61956 -11.50181 -11.40792 -10.88407 -10.83699 -10.63757 -10.34878 -10.12901 -10.06622 -9.35262 -8.70908 -8.65765 -8.34407 -8.10323 -6.38806 -4.08429 2.87813 3.40578 3.45059 3.46602 3.64605 3.89418 4.30916 4.40571 4.49563 4.54788 4.84529 5.00794 5.08960 5.14816 5.30299 5.34945 5.39686 5.43275 5.54144 5.67782 5.68001 5.70813 5.74535 5.83779 5.87252 5.90161 5.97840 6.06480 6.33191 6.59378 6.63742 6.80534 6.88286 7.27276 7.43439 7.66628 8.13618 8.41956 8.57716 8.84254 9.64598 11.02094 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.039091 B = 0.004692 C = 0.004554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.108104 B = 5965.799615 C = 6146.756539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 N -0.513 5.513 3 C 0.033 3.967 4 C -0.099 4.099 5 C -0.101 4.101 6 C -0.114 4.114 7 C 0.099 3.901 8 N -0.612 5.612 9 C 0.135 3.865 10 C -0.001 4.001 11 C -0.604 4.604 12 H 0.050 0.950 13 C 0.017 3.983 14 N -0.910 5.910 15 Si 1.071 2.929 16 H -0.282 1.282 17 H -0.287 1.287 18 H -0.287 1.287 19 C 0.524 3.476 20 O -0.531 6.531 21 C 0.052 3.948 22 H 0.030 0.970 23 H 0.070 0.930 24 H 0.068 0.932 25 H 0.083 0.917 26 H 0.047 0.953 27 H 0.082 0.918 28 H 0.072 0.928 29 H 0.083 0.917 30 H 0.091 0.909 31 H 0.080 0.920 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.071 0.929 35 H 0.011 0.989 36 H 0.008 0.992 37 H 0.268 0.732 38 H 0.059 0.941 39 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.848 7.053 17.115 18.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 N -0.237 5.237 3 C -0.095 4.095 4 C -0.138 4.138 5 C -0.105 4.105 6 C -0.151 4.151 7 C -0.025 4.025 8 N -0.344 5.344 9 C 0.015 3.985 10 C -0.039 4.039 11 C -0.642 4.642 12 H 0.069 0.931 13 C -0.187 4.187 14 N -0.546 5.546 15 Si 0.899 3.101 16 H -0.207 1.207 17 H -0.214 1.214 18 H -0.214 1.214 19 C 0.310 3.690 20 O -0.407 6.407 21 C -0.076 4.076 22 H 0.049 0.951 23 H 0.089 0.911 24 H 0.087 0.913 25 H 0.102 0.898 26 H 0.065 0.935 27 H 0.101 0.899 28 H 0.091 0.909 29 H 0.102 0.898 30 H 0.109 0.891 31 H 0.098 0.902 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.029 0.971 36 H 0.027 0.973 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -3.739 6.186 15.661 17.248 hybrid contribution -0.507 1.249 0.681 1.511 sum -4.246 7.435 16.342 18.449 Atomic orbital electron populations 1.22517 0.87936 1.02352 1.00857 1.65475 1.08271 1.15095 1.34864 1.23188 0.94968 0.90379 1.01003 1.22153 0.97295 0.95611 0.98696 1.21392 0.96963 0.97591 0.94571 1.22652 0.93894 0.99298 0.99286 1.22131 0.96068 0.99508 0.84774 1.48663 1.15406 1.59592 1.10782 1.21644 0.95161 1.01294 0.80443 1.19531 0.97087 0.91991 0.95261 1.21914 1.33734 1.06375 1.02218 0.93122 1.25869 0.96673 0.92507 1.03670 1.70779 1.29259 1.29689 1.24843 0.83523 0.75591 0.76070 0.74958 1.20718 1.21362 1.21383 1.20245 0.81857 0.77965 0.88946 1.90690 1.55584 1.44183 1.50288 1.22992 0.92742 1.00183 0.91680 0.95096 0.91128 0.91292 0.89844 0.93457 0.89913 0.90908 0.89797 0.89064 0.90174 0.91492 0.91420 0.91020 0.97065 0.97333 0.92139 0.92264 0.89340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 9.52 60.07 0.57 0.69 16 2 N -0.51 -5.97 5.66 -238.41 -1.35 -7.32 16 3 C 0.03 0.35 6.52 -1.99 -0.01 0.34 16 4 C -0.10 -1.14 6.32 -25.74 -0.16 -1.30 16 5 C -0.10 -1.40 0.83 -155.24 -0.13 -1.53 16 6 C -0.11 -1.32 6.24 -25.52 -0.16 -1.48 16 7 C 0.10 1.34 7.36 -2.94 -0.02 1.32 16 8 N -0.61 -11.26 2.94 -172.53 -0.51 -11.77 16 9 C 0.13 2.92 5.89 -4.04 -0.02 2.90 16 10 C 0.00 -0.02 4.61 -27.88 -0.13 -0.15 16 11 C -0.60 -17.50 9.11 -34.44 -0.31 -17.81 16 12 H 0.05 1.42 7.74 -52.48 -0.41 1.02 16 13 C 0.02 0.50 5.46 -17.82 -0.10 0.40 16 14 N -0.91 -28.43 13.65 55.43 0.76 -27.68 16 15 Si 1.07 25.59 29.90 -169.99 -5.08 20.50 16 16 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 17 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 18 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 19 C 0.52 9.88 6.64 -11.22 -0.07 9.81 16 20 O -0.53 -12.23 17.09 5.56 0.09 -12.13 16 21 C 0.05 0.71 5.66 -2.57 -0.01 0.70 16 22 H 0.03 0.32 7.98 -51.93 -0.41 -0.09 16 23 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 26 H 0.05 0.54 7.97 -51.93 -0.41 0.12 16 27 H 0.08 0.78 7.32 -51.93 -0.38 0.40 16 28 H 0.07 0.91 7.75 -51.93 -0.40 0.51 16 29 H 0.08 0.97 7.51 -51.93 -0.39 0.58 16 30 H 0.09 0.83 7.42 -51.93 -0.39 0.44 16 31 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 34 H 0.07 1.65 7.93 -51.93 -0.41 1.24 16 35 H 0.01 0.33 8.01 -51.93 -0.42 -0.09 16 36 H 0.01 0.23 8.01 -51.93 -0.42 -0.19 16 37 H 0.27 8.42 7.22 -40.82 -0.29 8.12 16 38 H 0.06 0.94 7.30 -51.93 -0.38 0.56 16 39 H 0.09 1.15 7.46 -51.93 -0.39 0.76 16 LS Contribution 313.20 15.07 4.72 4.72 Total: -1.00 -34.02 313.20 -8.36 -42.39 By element: Atomic # 1 Polarization: 3.84 SS G_CDS: -6.43 Total: -2.59 kcal Atomic # 6 Polarization: -5.55 SS G_CDS: -0.57 Total: -6.12 kcal Atomic # 7 Polarization: -45.67 SS G_CDS: -1.10 Total: -46.77 kcal Atomic # 8 Polarization: -12.23 SS G_CDS: 0.09 Total: -12.13 kcal Atomic # 14 Polarization: 25.59 SS G_CDS: -5.08 Total: 20.50 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -34.02 -8.36 -42.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273517951.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.197 kcal (2) G-P(sol) polarization free energy of solvation -34.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds