Wall clock time and date at job start Sun Mar 29 2020 23:05:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.48655 * 110.99734 * 2 1 4 4 C 1.54639 * 104.63456 * 201.49577 * 3 2 1 5 5 C 1.53254 * 104.67397 * 23.67995 * 4 3 2 6 6 C 1.53621 * 111.05360 * 239.01401 * 5 4 3 7 7 C 1.54695 * 101.51240 * 262.69122 * 6 5 4 8 8 N 1.46890 * 105.51765 * 335.47228 * 7 6 5 9 9 C 1.46496 * 124.37028 * 196.82074 * 8 7 6 10 10 C 1.52998 * 109.46847 * 90.00513 * 9 8 7 11 11 C 1.50706 * 109.47348 * 179.97438 * 10 9 8 12 12 H 1.08005 * 119.99758 * 359.97438 * 11 10 9 13 13 C 1.37871 * 120.00102 * 179.97438 * 11 10 9 14 14 N 1.31516 * 120.00217 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99766 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47057 * 179.97438 * 15 13 11 17 17 H 1.48500 * 109.47389 * 300.00068 * 15 13 11 18 18 H 1.48504 * 109.47102 * 60.00417 * 15 13 11 19 19 C 1.34753 * 111.25381 * 17.09270 * 8 7 6 20 20 O 1.21280 * 125.13577 * 178.70723 * 19 8 7 21 21 C 1.48804 * 110.99622 * 244.38947 * 2 1 3 22 22 H 1.08994 * 109.47172 * 60.12403 * 1 2 3 23 23 H 1.09005 * 109.46949 * 180.12527 * 1 2 3 24 24 H 1.08998 * 109.46786 * 300.12502 * 1 2 3 25 25 H 1.08994 * 110.40302 * 82.70446 * 3 2 1 26 26 H 1.08999 * 110.50450 * 320.33201 * 3 2 1 27 27 H 1.09006 * 110.39270 * 264.89002 * 4 3 2 28 28 H 1.08994 * 110.49626 * 142.53021 * 4 3 2 29 29 H 1.09000 * 111.01457 * 144.63005 * 6 5 4 30 30 H 1.08999 * 111.01447 * 20.75456 * 6 5 4 31 31 H 1.09000 * 110.24062 * 216.46577 * 7 6 5 32 32 H 1.08996 * 110.30894 * 94.51961 * 7 6 5 33 33 H 1.09000 * 109.47627 * 330.00539 * 9 8 7 34 34 H 1.09002 * 109.46983 * 209.99935 * 9 8 7 35 35 H 1.09001 * 109.47671 * 59.99931 * 10 9 8 36 36 H 1.09006 * 109.47297 * 299.99651 * 10 9 8 37 37 H 0.97001 * 119.99646 * 359.97438 * 14 13 11 38 38 H 1.09000 * 110.46322 * 39.47829 * 21 2 1 39 39 H 1.08998 * 110.45504 * 276.90686 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0017 1.3878 0.0000 4 6 3.4414 1.2538 -0.5483 5 6 3.4264 -0.0425 -1.3656 6 6 4.4555 -1.0473 -0.8258 7 6 5.6514 -0.8054 -1.7768 8 7 5.0695 -0.2533 -3.0073 9 6 5.7616 -0.1990 -4.2974 10 6 5.4781 -1.4813 -5.0824 11 6 6.1895 -1.4254 -6.4099 12 1 6.7839 -0.5613 -6.6679 13 6 6.0814 -2.4771 -7.2948 14 7 5.3571 -3.5290 -6.9808 15 14 6.9626 -2.4073 -8.9404 16 1 6.6886 -3.6525 -9.7018 17 1 6.4757 -1.2365 -9.7134 18 1 8.4245 -2.2777 -8.7140 19 6 3.8192 0.2022 -2.7949 20 8 3.1162 0.7278 -3.6318 21 6 2.0022 -0.6005 -1.2528 22 1 -0.3633 0.5119 -0.8910 23 1 -0.3633 -1.0277 0.0022 24 1 -0.3633 0.5158 0.8889 25 1 2.0168 1.7891 1.0133 26 1 1.4048 2.0259 -0.6517 27 1 4.1548 1.1771 0.2724 28 1 3.6873 2.1024 -1.1864 29 1 4.0870 -2.0694 -0.9132 30 1 4.7231 -0.8168 0.2054 31 1 6.1604 -1.7455 -1.9893 32 1 6.3472 -0.0918 -1.3356 33 1 6.8346 -0.1049 -4.1305 34 1 5.4052 0.6606 -4.8650 35 1 4.4051 -1.5756 -5.2494 36 1 5.8344 -2.3411 -4.5149 37 1 4.8993 -3.5650 -6.1264 38 1 1.4028 -0.2909 -2.1089 39 1 2.0240 -1.6875 -1.1749 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273517951.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:05:27 Heat of formation + Delta-G solvation = -60.688983 kcal Electronic energy + Delta-G solvation = -19179.673674 eV Core-core repulsion = 16313.594604 eV Total energy + Delta-G solvation = -2866.079070 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.20098 -39.15532 -37.62209 -36.11289 -34.28459 -31.93895 -30.49115 -29.30170 -27.20572 -26.32382 -24.41853 -23.80760 -22.35083 -21.75867 -20.04531 -19.06431 -17.64780 -17.32627 -16.77751 -16.40061 -15.91692 -15.65965 -15.39075 -15.05084 -14.84715 -14.81502 -14.42993 -14.17545 -13.84461 -13.66166 -13.27084 -13.01225 -12.72148 -12.52637 -12.49173 -12.41246 -12.27964 -12.10767 -11.94276 -11.82418 -11.63795 -10.98294 -10.72041 -10.60706 -9.69906 -9.62832 -8.76979 -6.48456 1.41293 1.50643 1.59854 1.79069 2.01605 2.54569 2.88164 3.09747 3.29247 3.32395 3.50040 3.85861 3.94925 4.15393 4.19813 4.22024 4.35760 4.40953 4.44266 4.52028 4.59516 4.62496 4.68333 4.71209 4.79819 4.90319 4.95025 5.01376 5.04005 5.06470 5.13697 5.19237 5.51275 5.64694 5.89511 5.90692 6.08180 6.15948 6.45502 7.07006 7.35525 8.63527 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.039091 B = 0.004692 C = 0.004554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.108104 B = 5965.799615 C = 6146.756539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 N -0.507 5.507 3 C 0.032 3.968 4 C -0.095 4.095 5 C -0.095 4.095 6 C -0.101 4.101 7 C 0.091 3.909 8 N -0.619 5.619 9 C 0.148 3.852 10 C 0.008 3.992 11 C -0.622 4.622 12 H 0.058 0.942 13 C -0.038 4.038 14 N -0.934 5.934 15 Si 1.122 2.878 16 H -0.283 1.283 17 H -0.272 1.272 18 H -0.260 1.260 19 C 0.509 3.491 20 O -0.587 6.587 21 C 0.052 3.948 22 H 0.018 0.982 23 H 0.075 0.925 24 H 0.091 0.909 25 H 0.114 0.886 26 H 0.033 0.967 27 H 0.118 0.882 28 H 0.057 0.943 29 H 0.083 0.917 30 H 0.133 0.867 31 H 0.078 0.922 32 H 0.101 0.899 33 H 0.093 0.907 34 H 0.050 0.950 35 H -0.033 1.033 36 H 0.000 1.000 37 H 0.252 0.748 38 H 0.025 0.975 39 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.379 7.612 19.301 20.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 N -0.230 5.230 3 C -0.096 4.096 4 C -0.134 4.134 5 C -0.099 4.099 6 C -0.138 4.138 7 C -0.030 4.030 8 N -0.350 5.350 9 C 0.026 3.974 10 C -0.030 4.030 11 C -0.660 4.660 12 H 0.077 0.923 13 C -0.235 4.235 14 N -0.571 5.571 15 Si 0.942 3.058 16 H -0.208 1.208 17 H -0.198 1.198 18 H -0.184 1.184 19 C 0.297 3.703 20 O -0.468 6.468 21 C -0.077 4.077 22 H 0.037 0.963 23 H 0.094 0.906 24 H 0.110 0.890 25 H 0.132 0.868 26 H 0.052 0.948 27 H 0.136 0.864 28 H 0.076 0.924 29 H 0.101 0.899 30 H 0.151 0.849 31 H 0.097 0.903 32 H 0.119 0.881 33 H 0.111 0.889 34 H 0.069 0.931 35 H -0.014 1.014 36 H 0.018 0.982 37 H 0.061 0.939 38 H 0.043 0.957 39 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -2.255 6.747 17.914 19.275 hybrid contribution -1.016 1.084 0.022 1.486 sum -3.271 7.831 17.936 19.842 Atomic orbital electron populations 1.22606 0.86959 1.02966 1.01355 1.65537 1.09222 1.15516 1.32744 1.23292 0.94186 0.89721 1.02367 1.22233 0.98700 0.93463 0.98956 1.21406 0.97510 0.99796 0.91214 1.22730 0.91774 0.98547 1.00739 1.22508 0.97316 1.00156 0.83018 1.48775 1.15603 1.59529 1.11098 1.21213 0.96741 0.97633 0.81797 1.19386 0.93903 0.94199 0.95498 1.22373 1.33686 1.06617 1.03303 0.92325 1.27576 0.96530 0.91864 1.07528 1.70926 1.30797 1.31059 1.24303 0.82898 0.75967 0.76478 0.70501 1.20804 1.19767 1.18449 1.21255 0.81423 0.76758 0.90835 1.90642 1.56996 1.46608 1.52570 1.22940 0.92483 1.00600 0.91664 0.96326 0.90581 0.88992 0.86789 0.94845 0.86362 0.92395 0.89885 0.84870 0.90319 0.88076 0.88899 0.93104 1.01434 0.98220 0.93891 0.95697 0.88881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.18 9.52 127.69 1.22 1.39 16 2 N -0.51 -10.81 5.66 -908.20 -5.14 -15.95 16 3 C 0.03 0.62 6.52 86.52 0.56 1.18 16 4 C -0.10 -1.95 6.32 31.24 0.20 -1.76 16 5 C -0.10 -2.53 0.83 -52.65 -0.04 -2.57 16 6 C -0.10 -2.03 6.24 31.38 0.20 -1.83 16 7 C 0.09 2.26 7.36 86.88 0.64 2.90 16 8 N -0.62 -22.82 2.94 -818.17 -2.41 -25.23 16 9 C 0.15 6.54 5.89 86.38 0.51 7.05 16 10 C 0.01 0.45 4.61 29.85 0.14 0.58 16 11 C -0.62 -36.64 9.11 25.60 0.23 -36.40 16 12 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 13 C -0.04 -2.24 5.46 84.65 0.46 -1.78 16 14 N -0.93 -59.90 13.65 21.45 0.29 -59.61 16 15 Si 1.12 51.03 29.90 68.60 2.05 53.08 16 16 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 17 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 18 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 19 C 0.51 19.73 6.64 87.51 0.58 20.31 16 20 O -0.59 -28.83 17.09 -3.03 -0.05 -28.88 16 21 C 0.05 1.41 5.66 86.06 0.49 1.89 16 22 H 0.02 0.38 7.98 -2.39 -0.02 0.37 16 23 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 24 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 25 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 26 H 0.03 0.73 7.97 -2.39 -0.02 0.72 16 27 H 0.12 1.61 7.32 -2.38 -0.02 1.59 16 28 H 0.06 1.38 7.75 -2.39 -0.02 1.36 16 29 H 0.08 1.72 7.51 -2.39 -0.02 1.70 16 30 H 0.13 1.65 7.42 -2.39 -0.02 1.64 16 31 H 0.08 1.99 8.14 -2.39 -0.02 1.98 16 32 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.09 3.61 8.14 -2.39 -0.02 3.59 16 34 H 0.05 2.43 7.93 -2.39 -0.02 2.41 16 35 H -0.03 -2.07 8.01 -2.39 -0.02 -2.08 16 36 H 0.00 -0.03 8.01 -2.38 -0.02 -0.05 16 37 H 0.25 16.54 7.22 -92.71 -0.67 15.87 16 38 H 0.02 0.84 7.30 -2.39 -0.02 0.82 16 39 H 0.09 2.39 7.46 -2.39 -0.02 2.37 16 Total: -1.00 -78.19 313.20 1.03 -77.16 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: 1.11 Total: 8.46 kcal Atomic # 6 Polarization: -14.21 SS G_CDS: 5.18 Total: -9.03 kcal Atomic # 7 Polarization: -93.53 SS G_CDS: -7.26 Total: -100.79 kcal Atomic # 8 Polarization: -28.83 SS G_CDS: -0.05 Total: -28.88 kcal Atomic # 14 Polarization: 51.03 SS G_CDS: 2.05 Total: 53.08 kcal Total: -78.19 1.03 -77.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273517951.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.471 kcal (2) G-P(sol) polarization free energy of solvation -78.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds