Wall clock time and date at job start Sun Mar 29 2020 23:35:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34783 * 120.00096 * 2 1 4 4 O 1.21277 * 119.99727 * 0.02562 * 3 2 1 5 5 C 1.50696 * 120.00254 * 180.02562 * 3 2 1 6 6 H 1.09009 * 115.56615 * 34.28035 * 5 3 2 7 7 C 1.53051 * 117.50596 * 248.56464 * 5 3 2 8 8 C 1.52723 * 117.50907 * 179.97438 * 5 3 2 9 9 C 1.53231 * 117.83477 * 359.74362 * 8 5 3 10 10 C 1.53245 * 108.63353 * 163.02047 * 9 8 5 11 11 N 1.46814 * 109.44824 * 55.56387 * 10 9 8 12 12 C 1.46909 * 110.99800 * 170.80583 * 11 10 9 13 13 C 1.50704 * 109.46974 * 64.98577 * 12 11 10 14 14 H 1.08007 * 119.99805 * 354.96837 * 13 12 11 15 15 C 1.37873 * 119.99907 * 174.96806 * 13 12 11 16 16 N 1.31519 * 119.99997 * 180.02562 * 15 13 12 17 17 Si 1.86794 * 120.00101 * 0.02562 * 15 13 12 18 18 H 1.48502 * 109.47255 * 269.99954 * 17 15 13 19 19 H 1.48499 * 109.47405 * 29.99774 * 17 15 13 20 20 H 1.48503 * 109.47367 * 150.00209 * 17 15 13 21 21 C 1.46809 * 111.58797 * 295.18296 * 11 10 9 22 22 C 1.53206 * 117.85014 * 215.21696 * 8 5 3 23 23 H 1.09005 * 109.47280 * 300.00132 * 1 2 3 24 24 H 1.09005 * 109.47156 * 59.99756 * 1 2 3 25 25 H 1.08995 * 109.47232 * 180.02562 * 1 2 3 26 26 H 0.96993 * 120.00042 * 180.02562 * 2 1 3 27 27 H 1.09001 * 117.51388 * 145.05839 * 7 5 3 28 28 H 1.08998 * 117.53317 * 359.97153 * 7 5 3 29 29 H 1.08997 * 109.61079 * 43.27400 * 9 8 5 30 30 H 1.09004 * 109.60963 * 282.76557 * 9 8 5 31 31 H 1.09000 * 109.47033 * 295.57649 * 10 9 8 32 32 H 1.08992 * 109.47920 * 175.56159 * 10 9 8 33 33 H 1.08996 * 109.47045 * 304.98974 * 12 11 10 34 34 H 1.08991 * 109.46907 * 184.98234 * 12 11 10 35 35 H 0.96991 * 119.99862 * 180.02562 * 16 15 13 36 36 H 1.08997 * 109.47761 * 184.81213 * 21 11 10 37 37 H 1.08998 * 109.47347 * 304.83028 * 21 11 10 38 38 H 1.09006 * 109.61085 * 316.71774 * 22 8 5 39 39 H 1.08998 * 109.61388 * 77.05880 * 22 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5325 2.2175 0.0005 5 6 3.6459 1.1673 -0.0006 6 1 4.1161 0.3549 -0.5548 7 6 4.3532 1.6631 1.2629 8 6 4.3512 2.5219 -0.0012 9 6 3.4799 3.7823 -0.0072 10 6 4.3423 4.9758 0.4173 11 7 5.5139 5.0696 -0.4625 12 6 6.2480 6.3207 -0.2299 13 6 6.8184 6.3166 1.1651 14 1 6.5850 5.5075 1.8415 15 6 7.6382 7.3455 1.5777 16 7 8.1363 7.3416 2.7949 17 14 8.0412 8.7450 0.4081 18 1 9.2660 8.4096 -0.3618 19 1 6.9077 8.9487 -0.5294 20 1 8.2705 9.9894 1.1854 21 6 6.3966 3.9062 -0.3125 22 6 5.6631 2.6454 -0.7829 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 1.9500 -0.8400 -0.0004 27 1 5.2888 1.1772 1.5398 28 1 3.7289 1.9898 2.0945 29 1 2.6544 3.6597 0.6940 30 1 3.0888 3.9519 -1.0104 31 1 4.6714 4.8382 1.4473 32 1 3.7570 5.8921 0.3420 33 1 5.5696 7.1664 -0.3424 34 1 7.0585 6.4063 -0.9535 35 1 8.7127 8.0656 3.0853 36 1 7.2937 4.0506 -0.9144 37 1 6.6758 3.7945 0.7352 38 1 6.2843 1.7694 -0.5957 39 1 5.4481 2.7203 -1.8488 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274032383.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:35:58 Heat of formation + Delta-G solvation = -8.375118 kcal Electronic energy + Delta-G solvation = -19067.861641 eV Core-core repulsion = 16204.051070 eV Total energy + Delta-G solvation = -2863.810571 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.33305 -38.24969 -35.79291 -34.62477 -32.47970 -30.30090 -30.07714 -27.54469 -26.18146 -23.38187 -22.72056 -22.49580 -20.57941 -20.08966 -18.25235 -17.12984 -16.64767 -15.94896 -15.35561 -14.93213 -14.44741 -14.21645 -14.01718 -13.91728 -13.25585 -12.87083 -12.68547 -12.49896 -12.35345 -12.09997 -12.04439 -11.66195 -11.33827 -11.08139 -10.65021 -10.52967 -10.27373 -10.03802 -10.01128 -9.66046 -9.52547 -9.43855 -9.23197 -9.09856 -8.54780 -7.07193 -6.06296 -4.05345 2.52553 3.09059 3.30940 3.38595 3.43818 3.94903 4.43990 4.65619 4.85312 4.89119 4.99733 5.14456 5.18357 5.27944 5.30900 5.39229 5.57364 5.70968 5.87173 5.92105 6.04850 6.14757 6.19692 6.27507 6.30845 6.48963 6.59045 6.65858 6.83700 6.87339 7.03464 7.07050 7.16223 7.36898 7.63362 8.16892 8.22784 8.26213 8.50846 8.97317 9.57457 11.06853 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.046181 B = 0.004636 C = 0.004584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.169038 B = 6038.804309 C = 6106.077969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.739 5.739 3 C 0.542 3.458 4 O -0.526 6.526 5 C -0.200 4.200 6 H 0.118 0.882 7 C -0.145 4.145 8 C -0.069 4.069 9 C -0.073 4.073 10 C 0.064 3.936 11 N -0.536 5.536 12 C 0.154 3.846 13 C -0.548 4.548 14 H 0.074 0.926 15 C 0.071 3.929 16 N -0.901 5.901 17 Si 0.879 3.121 18 H -0.277 1.277 19 H -0.264 1.264 20 H -0.288 1.288 21 C 0.069 3.931 22 C -0.080 4.080 23 H 0.058 0.942 24 H 0.058 0.942 25 H 0.072 0.928 26 H 0.400 0.600 27 H 0.102 0.898 28 H 0.097 0.903 29 H 0.082 0.918 30 H 0.066 0.934 31 H 0.039 0.961 32 H 0.064 0.936 33 H 0.027 0.973 34 H 0.024 0.976 35 H 0.263 0.737 36 H 0.065 0.935 37 H 0.044 0.956 38 H 0.059 0.941 39 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.463 -16.356 -6.043 20.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.391 5.391 3 C 0.329 3.671 4 O -0.402 6.402 5 C -0.221 4.221 6 H 0.136 0.864 7 C -0.183 4.183 8 C -0.070 4.070 9 C -0.111 4.111 10 C -0.065 4.065 11 N -0.260 5.260 12 C 0.027 3.973 13 C -0.587 4.587 14 H 0.092 0.908 15 C -0.131 4.131 16 N -0.540 5.540 17 Si 0.706 3.294 18 H -0.203 1.203 19 H -0.188 1.188 20 H -0.214 1.214 21 C -0.059 4.059 22 C -0.118 4.118 23 H 0.077 0.923 24 H 0.077 0.923 25 H 0.091 0.909 26 H 0.233 0.767 27 H 0.121 0.879 28 H 0.115 0.885 29 H 0.100 0.900 30 H 0.084 0.916 31 H 0.057 0.943 32 H 0.082 0.918 33 H 0.045 0.955 34 H 0.042 0.958 35 H 0.072 0.928 36 H 0.084 0.916 37 H 0.062 0.938 38 H 0.078 0.922 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -10.992 -15.469 -6.407 20.029 hybrid contribution 0.855 0.176 0.410 0.965 sum -10.137 -15.293 -5.997 19.303 Atomic orbital electron populations 1.21499 0.79899 1.01873 1.02311 1.45819 1.07495 1.08819 1.76975 1.19872 0.88777 0.83319 0.75083 1.90697 1.70180 1.30751 1.48582 1.22313 0.91143 1.02257 1.06380 0.86390 1.23064 1.01302 1.02883 0.91035 1.21594 0.96966 0.90070 0.98333 1.21436 0.96043 0.90955 1.02647 1.21961 0.92015 0.97113 0.95410 1.62195 1.08219 1.02986 1.52611 1.20171 0.93358 0.87939 0.95808 1.21737 1.29561 1.09176 0.98209 0.90755 1.24978 0.95292 0.97899 0.94977 1.69933 1.33397 1.33037 1.17595 0.86791 0.79327 0.81956 0.81307 1.20252 1.18845 1.21389 1.21803 0.94745 0.89261 1.00137 1.21327 0.92989 0.98125 0.99370 0.92337 0.92321 0.90943 0.76656 0.87921 0.88481 0.89967 0.91571 0.94322 0.91792 0.95530 0.95788 0.92775 0.91615 0.93799 0.92229 0.91234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.70 10.70 59.85 0.64 1.34 16 2 N -0.74 -6.79 5.71 -67.08 -0.38 -7.17 16 3 C 0.54 7.09 7.59 -10.98 -0.08 7.00 16 4 O -0.53 -8.86 13.13 5.56 0.07 -8.79 16 5 C -0.20 -2.44 5.92 -91.89 -0.54 -2.98 16 6 H 0.12 1.13 8.14 -51.92 -0.42 0.71 16 7 C -0.15 -1.94 9.63 -26.80 -0.26 -2.20 16 8 C -0.07 -1.06 2.02 -154.52 -0.31 -1.37 16 9 C -0.07 -1.31 4.32 -26.49 -0.11 -1.42 16 10 C 0.06 1.32 5.08 -3.74 -0.02 1.30 16 11 N -0.54 -11.63 4.78 -235.90 -1.13 -12.75 16 12 C 0.15 3.82 4.16 -4.97 -0.02 3.79 16 13 C -0.55 -15.50 8.34 -34.44 -0.29 -15.79 16 14 H 0.07 2.28 6.17 -52.48 -0.32 1.96 16 15 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 16 N -0.90 -27.73 13.96 55.43 0.77 -26.96 16 17 Si 0.88 21.78 27.37 -169.99 -4.65 17.13 16 18 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 19 H -0.26 -6.34 6.69 56.52 0.38 -5.96 16 20 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 21 C 0.07 1.35 4.99 -3.74 -0.02 1.34 16 22 C -0.08 -1.24 5.87 -26.49 -0.16 -1.39 16 23 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 25 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 26 H 0.40 2.44 8.83 -40.82 -0.36 2.08 16 27 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 28 H 0.10 1.36 8.14 -51.93 -0.42 0.94 16 29 H 0.08 1.51 6.00 -51.93 -0.31 1.20 16 30 H 0.07 1.23 8.12 -51.93 -0.42 0.81 16 31 H 0.04 0.88 6.96 -51.93 -0.36 0.52 16 32 H 0.06 1.34 8.01 -51.93 -0.42 0.92 16 33 H 0.03 0.67 7.45 -51.93 -0.39 0.29 16 34 H 0.02 0.59 7.28 -51.93 -0.38 0.21 16 35 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 36 H 0.07 1.28 8.08 -51.93 -0.42 0.86 16 37 H 0.04 0.96 6.86 -51.93 -0.36 0.60 16 38 H 0.06 0.78 8.08 -51.93 -0.42 0.36 16 39 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 307.10 15.07 4.63 4.63 Total: -1.00 -32.84 307.10 -8.23 -41.07 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -6.27 Total: 1.26 kcal Atomic # 6 Polarization: -7.15 SS G_CDS: -1.27 Total: -8.42 kcal Atomic # 7 Polarization: -46.15 SS G_CDS: -0.74 Total: -46.88 kcal Atomic # 8 Polarization: -8.86 SS G_CDS: 0.07 Total: -8.79 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.65 Total: 17.13 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -32.84 -8.23 -41.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274032383.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.699 kcal (2) G-P(sol) polarization free energy of solvation -32.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds