Wall clock time and date at job start Sun Mar 29 2020 23:36:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34777 * 120.00184 * 2 1 4 4 O 1.21280 * 119.99710 * 359.97438 * 3 2 1 5 5 C 1.50700 * 120.00249 * 180.02562 * 3 2 1 6 6 H 1.09003 * 115.56472 * 325.71855 * 5 3 2 7 7 C 1.53060 * 117.50652 * 111.43736 * 5 3 2 8 8 C 1.52730 * 117.50694 * 179.97438 * 5 3 2 9 9 C 1.53223 * 117.84002 * 144.79314 * 8 5 3 10 10 C 1.53241 * 108.63245 * 163.02087 * 9 8 5 11 11 N 1.46813 * 109.45172 * 55.56663 * 10 9 8 12 12 C 1.46906 * 111.00353 * 170.80154 * 11 10 9 13 13 C 1.50701 * 109.46708 * 65.04076 * 12 11 10 14 14 H 1.08007 * 120.00016 * 354.96887 * 13 12 11 15 15 C 1.37875 * 120.00187 * 174.96935 * 13 12 11 16 16 N 1.31515 * 119.99644 * 0.27228 * 15 13 12 17 17 Si 1.86800 * 120.00272 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47392 * 59.99527 * 17 15 13 19 19 H 1.48492 * 109.47087 * 180.02562 * 17 15 13 20 20 H 1.48507 * 109.46685 * 299.99691 * 17 15 13 21 21 C 1.46811 * 111.58697 * 295.18462 * 11 10 9 22 22 C 1.53216 * 117.84315 * 0.26793 * 8 5 3 23 23 H 1.08997 * 109.47415 * 59.99916 * 1 2 3 24 24 H 1.09003 * 109.47070 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46693 * 299.99929 * 1 2 3 26 26 H 0.97001 * 120.00184 * 180.02562 * 2 1 3 27 27 H 1.09000 * 117.50371 * 0.02562 * 7 5 3 28 28 H 1.08993 * 117.53484 * 214.93132 * 7 5 3 29 29 H 1.09002 * 109.60711 * 43.27816 * 9 8 5 30 30 H 1.09003 * 109.61309 * 282.77038 * 9 8 5 31 31 H 1.09003 * 109.47828 * 295.57900 * 10 9 8 32 32 H 1.08999 * 109.47786 * 175.55938 * 10 9 8 33 33 H 1.08994 * 109.46920 * 305.04370 * 12 11 10 34 34 H 1.08998 * 109.47048 * 185.03693 * 12 11 10 35 35 H 0.97000 * 120.00246 * 359.72969 * 16 15 13 36 36 H 1.08998 * 109.47539 * 184.80636 * 21 11 10 37 37 H 1.08996 * 109.47455 * 304.82277 * 21 11 10 38 38 H 1.09004 * 109.61104 * 316.71951 * 22 8 5 39 39 H 1.08996 * 109.61339 * 77.23297 * 22 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5325 2.2175 -0.0005 5 6 3.6459 1.1672 -0.0006 6 1 4.1165 0.3546 0.5529 7 6 4.3523 1.6637 -1.2644 8 6 4.3513 2.5219 -0.0012 9 6 5.6639 2.6454 0.7794 10 6 6.3971 3.9058 0.3081 11 7 5.5148 5.0696 0.4582 12 6 6.2488 6.3205 0.2246 13 6 6.7067 6.3737 -1.2102 14 1 6.5471 5.5257 -1.8598 15 6 7.3294 7.5048 -1.6936 16 7 7.5286 8.5353 -0.9011 17 14 7.8963 7.5711 -3.4723 18 1 6.7279 7.3928 -4.3712 19 1 8.5319 8.8860 -3.7406 20 1 8.8805 6.4867 -3.7187 21 6 4.3425 4.9756 -0.4205 22 6 3.4801 3.7823 0.0052 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.9500 -0.8400 -0.0004 27 1 3.7269 1.9906 -2.0951 28 1 5.2877 1.1782 -1.5425 29 1 6.2848 1.7693 0.5920 30 1 5.4498 2.7238 1.8454 31 1 6.6756 3.7938 -0.7398 32 1 7.2947 4.0504 0.9093 33 1 7.1155 6.3617 0.8843 34 1 5.5956 7.1687 0.4292 35 1 7.2339 8.5011 0.0224 36 1 3.7573 5.8921 -0.3451 37 1 4.6707 4.8376 -1.4507 38 1 2.6540 3.6596 -0.6952 39 1 3.0900 3.9523 1.0087 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274032384.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:36:01 Heat of formation + Delta-G solvation = -15.540730 kcal Electronic energy + Delta-G solvation = -19094.997158 eV Core-core repulsion = 16230.875863 eV Total energy + Delta-G solvation = -2864.121295 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.36856 -38.27586 -35.83816 -34.65266 -32.77159 -30.32049 -29.72179 -27.44601 -25.32870 -23.42863 -22.99285 -22.59562 -20.88710 -20.18121 -18.34597 -17.16576 -16.64376 -15.91258 -15.36838 -14.80264 -14.45256 -14.21261 -14.18649 -13.69535 -13.29192 -13.00621 -12.72920 -12.58462 -12.46096 -12.04437 -11.69497 -11.66218 -11.39063 -10.92001 -10.60792 -10.55318 -10.31758 -10.10820 -10.06475 -9.60582 -9.58147 -9.26781 -9.21179 -9.02527 -8.33544 -7.01751 -6.33236 -4.06944 2.49376 3.06172 3.43105 3.44743 3.63471 3.90517 4.54639 4.62023 4.80907 4.85373 4.96889 5.12494 5.17065 5.28784 5.35038 5.40276 5.55284 5.66989 5.80199 5.87693 5.99353 6.11468 6.16275 6.24090 6.29064 6.45949 6.55091 6.64050 6.78764 6.84018 7.03438 7.17166 7.29922 7.34160 7.97016 8.19853 8.20270 8.30551 8.57403 8.84960 9.66553 11.03474 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.036797 B = 0.004791 C = 0.004707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.750251 B = 5843.341579 C = 5946.803249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.739 5.739 3 C 0.542 3.458 4 O -0.526 6.526 5 C -0.199 4.199 6 H 0.118 0.882 7 C -0.147 4.147 8 C -0.069 4.069 9 C -0.080 4.080 10 C 0.070 3.930 11 N -0.539 5.539 12 C 0.175 3.825 13 C -0.626 4.626 14 H 0.050 0.950 15 C 0.021 3.979 16 N -0.910 5.910 17 Si 1.065 2.935 18 H -0.289 1.289 19 H -0.282 1.282 20 H -0.289 1.289 21 C 0.068 3.932 22 C -0.074 4.074 23 H 0.058 0.942 24 H 0.072 0.928 25 H 0.058 0.942 26 H 0.400 0.600 27 H 0.097 0.903 28 H 0.102 0.898 29 H 0.059 0.941 30 H 0.070 0.930 31 H 0.037 0.963 32 H 0.064 0.936 33 H 0.017 0.983 34 H 0.022 0.978 35 H 0.269 0.731 36 H 0.063 0.937 37 H 0.036 0.964 38 H 0.082 0.918 39 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.329 -19.419 1.424 21.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.391 5.391 3 C 0.329 3.671 4 O -0.401 6.401 5 C -0.220 4.220 6 H 0.136 0.864 7 C -0.184 4.184 8 C -0.069 4.069 9 C -0.118 4.118 10 C -0.059 4.059 11 N -0.262 5.262 12 C 0.049 3.951 13 C -0.665 4.665 14 H 0.069 0.931 15 C -0.184 4.184 16 N -0.547 5.547 17 Si 0.893 3.107 18 H -0.215 1.215 19 H -0.207 1.207 20 H -0.216 1.216 21 C -0.061 4.061 22 C -0.112 4.112 23 H 0.077 0.923 24 H 0.091 0.909 25 H 0.077 0.923 26 H 0.233 0.767 27 H 0.115 0.885 28 H 0.120 0.880 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.055 0.945 32 H 0.082 0.918 33 H 0.035 0.965 34 H 0.040 0.960 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.054 0.946 38 H 0.100 0.900 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -9.216 -17.662 0.795 19.938 hybrid contribution -0.251 -1.627 0.267 1.667 sum -9.466 -19.289 1.063 21.513 Atomic orbital electron populations 1.21501 0.79862 1.01892 1.02332 1.45816 1.07514 1.08795 1.76967 1.19861 0.88753 0.83340 0.75136 1.90703 1.70163 1.30748 1.48526 1.22309 0.91207 1.02243 1.06265 0.86364 1.23047 1.01290 1.02974 0.91087 1.21583 0.96976 0.90130 0.98243 1.21326 0.92990 0.97989 0.99497 1.21785 0.94910 0.89661 0.99510 1.62197 1.08223 1.03150 1.52669 1.19829 0.92726 0.86944 0.95588 1.22567 1.43017 1.03470 0.97484 0.93141 1.25751 0.94533 0.92393 1.05737 1.70783 1.44458 1.31435 1.07975 0.83606 0.76373 0.76053 0.74663 1.21517 1.20723 1.21552 1.21908 0.92015 0.96940 0.95194 1.21456 0.96064 0.90993 1.02671 0.92336 0.90918 0.92295 0.76659 0.88505 0.87985 0.92258 0.91158 0.94491 0.91788 0.96470 0.95988 0.92001 0.91882 0.94591 0.89996 0.91583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.70 10.70 59.85 0.64 1.34 16 2 N -0.74 -6.78 5.71 -67.08 -0.38 -7.16 16 3 C 0.54 7.11 7.59 -10.99 -0.08 7.02 16 4 O -0.53 -8.93 13.13 5.56 0.07 -8.86 16 5 C -0.20 -2.43 5.93 -91.88 -0.54 -2.97 16 6 H 0.12 1.13 8.14 -51.93 -0.42 0.71 16 7 C -0.15 -1.92 9.62 -26.85 -0.26 -2.18 16 8 C -0.07 -1.06 2.02 -154.56 -0.31 -1.37 16 9 C -0.08 -1.25 5.87 -26.49 -0.16 -1.41 16 10 C 0.07 1.39 5.09 -3.75 -0.02 1.37 16 11 N -0.54 -12.16 4.78 -235.90 -1.13 -13.28 16 12 C 0.18 4.65 4.45 -4.97 -0.02 4.63 16 13 C -0.63 -17.77 7.79 -34.44 -0.27 -18.04 16 14 H 0.05 1.43 5.93 -52.48 -0.31 1.12 16 15 C 0.02 0.60 5.46 -17.82 -0.10 0.50 16 16 N -0.91 -28.02 13.65 55.43 0.76 -27.27 16 17 Si 1.06 25.61 29.90 -169.99 -5.08 20.53 16 18 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 19 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 21 C 0.07 1.46 4.99 -3.74 -0.02 1.44 16 22 C -0.07 -1.36 4.32 -26.48 -0.11 -1.47 16 23 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 25 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.40 2.41 8.83 -40.82 -0.36 2.05 16 27 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 28 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.06 0.77 8.08 -51.93 -0.42 0.35 16 30 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.04 0.79 6.97 -51.93 -0.36 0.43 16 32 H 0.06 1.28 8.01 -51.93 -0.42 0.86 16 33 H 0.02 0.48 8.03 -51.93 -0.42 0.06 16 34 H 0.02 0.62 7.80 -51.93 -0.41 0.22 16 35 H 0.27 8.27 7.19 -40.82 -0.29 7.98 16 36 H 0.06 1.41 8.08 -51.93 -0.42 0.99 16 37 H 0.04 0.83 6.85 -51.93 -0.36 0.47 16 38 H 0.08 1.53 6.00 -51.93 -0.31 1.22 16 39 H 0.07 1.27 8.12 -51.93 -0.42 0.85 16 LS Contribution 309.21 15.07 4.66 4.66 Total: -1.00 -33.06 309.21 -8.61 -41.66 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -6.25 Total: 0.86 kcal Atomic # 6 Polarization: -9.88 SS G_CDS: -1.25 Total: -11.14 kcal Atomic # 7 Polarization: -46.96 SS G_CDS: -0.75 Total: -47.71 kcal Atomic # 8 Polarization: -8.93 SS G_CDS: 0.07 Total: -8.86 kcal Atomic # 14 Polarization: 25.61 SS G_CDS: -5.08 Total: 20.53 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -33.06 -8.61 -41.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274032384.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.122 kcal (2) G-P(sol) polarization free energy of solvation -33.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds