Wall clock time and date at job start Sun Mar 29 2020 23:05:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46918 * 124.34788 * 2 1 4 4 C 1.53845 * 105.35002 * 163.59030 * 3 2 1 5 5 C 1.53963 * 102.45131 * 24.72167 * 4 3 2 6 6 C 1.34497 * 124.35780 * 180.02562 * 2 1 3 7 7 O 1.21281 * 124.94069 * 0.33852 * 6 2 1 8 8 C 1.52240 * 110.58362 * 266.88898 * 4 3 2 9 9 C 1.53242 * 109.42360 * 179.28541 * 8 4 3 10 10 C 1.53145 * 109.06047 * 56.42701 * 9 8 4 11 11 C 1.53044 * 109.33834 * 301.65898 * 10 9 8 12 12 N 1.45966 * 110.73594 * 142.81896 * 4 3 2 13 13 C 1.46894 * 110.99805 * 307.32599 * 12 4 3 14 14 C 1.50704 * 109.47000 * 180.30122 * 13 12 4 15 15 H 1.08002 * 119.99968 * 354.76069 * 14 13 12 16 16 C 1.37875 * 120.00118 * 174.76726 * 14 13 12 17 17 N 1.31522 * 119.99877 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00236 * 179.72275 * 16 14 13 19 19 H 1.48504 * 109.47415 * 180.27497 * 18 16 14 20 20 H 1.48504 * 109.46898 * 300.27292 * 18 16 14 21 21 H 1.48497 * 109.46967 * 60.26912 * 18 16 14 22 22 H 1.08999 * 109.47521 * 90.00199 * 1 2 3 23 23 H 1.09001 * 109.46902 * 209.99862 * 1 2 3 24 24 H 1.09002 * 109.47672 * 329.99718 * 1 2 3 25 25 H 1.09005 * 110.26717 * 44.62299 * 3 2 1 26 26 H 1.09002 * 110.27382 * 282.55905 * 3 2 1 27 27 H 1.08997 * 110.50929 * 94.51699 * 5 4 3 28 28 H 1.09005 * 110.51091 * 217.22000 * 5 4 3 29 29 H 1.08996 * 109.47617 * 59.30125 * 8 4 3 30 30 H 1.08997 * 109.48486 * 299.27860 * 8 4 3 31 31 H 1.08995 * 109.54563 * 296.54675 * 9 8 4 32 32 H 1.09000 * 109.53627 * 176.29593 * 9 8 4 33 33 H 1.08995 * 109.49047 * 181.70231 * 10 9 8 34 34 H 1.08998 * 109.49468 * 61.61848 * 10 9 8 35 35 H 1.09004 * 109.46977 * 299.83356 * 11 10 9 36 36 H 1.09000 * 109.46794 * 179.83555 * 11 10 9 37 37 H 1.08997 * 109.47276 * 60.30220 * 13 12 4 38 38 H 1.08994 * 109.47403 * 300.29370 * 13 12 4 39 39 H 0.96994 * 120.00233 * 359.72948 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2939 1.2130 0.0000 4 6 3.6986 0.7463 0.4191 5 6 3.6917 -0.7376 0.0085 6 6 2.2240 -1.1103 -0.0005 7 8 1.7953 -2.2448 -0.0069 8 6 3.8813 0.8834 1.9243 9 6 5.2806 0.3954 2.3144 10 6 6.3251 1.1852 1.5203 11 6 6.0731 0.9955 0.0227 12 7 4.7267 1.4798 -0.3128 13 6 4.4895 1.4146 -1.7610 14 6 5.5725 2.1750 -2.4821 15 1 6.3097 2.7287 -1.9196 16 6 5.6221 2.1641 -3.8599 17 7 4.7246 1.4895 -4.5449 18 14 6.9599 3.1130 -4.7540 19 1 6.7897 2.9464 -6.2198 20 1 6.8628 4.5532 -4.4049 21 1 8.2906 2.5939 -4.3479 22 1 -0.3634 0.0000 -1.0276 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3634 0.8899 0.5139 25 1 1.9060 1.9354 0.7183 26 1 2.3234 1.6503 -0.9980 27 1 4.1232 -0.8610 -0.9847 28 1 4.2338 -1.3385 0.7388 29 1 3.1306 0.2827 2.4377 30 1 3.7681 1.9290 2.2105 31 1 5.3738 -0.6660 2.0845 32 1 5.4375 0.5537 3.3813 33 1 7.3222 0.8228 1.7701 34 1 6.2488 2.2432 1.7708 35 1 6.1517 -0.0624 -0.2278 36 1 6.8138 1.5592 -0.5445 37 1 3.5203 1.8571 -1.9908 38 1 4.4997 0.3738 -2.0844 39 1 4.0301 0.9965 -4.0807 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274032865.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:05:12 Heat of formation + Delta-G solvation = -26.974306 kcal Electronic energy + Delta-G solvation = -20041.519783 eV Core-core repulsion = 17176.902691 eV Total energy + Delta-G solvation = -2864.617092 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.93647 -38.18272 -35.59105 -34.09425 -32.36227 -31.70593 -28.65930 -27.10216 -26.55858 -24.86424 -23.98181 -21.75717 -21.10628 -19.34027 -18.35195 -17.01469 -16.51969 -16.02170 -15.26011 -14.83322 -14.47242 -14.06725 -13.88558 -13.75196 -13.66777 -13.06358 -13.00102 -12.66138 -12.19389 -12.15585 -11.88146 -11.76489 -11.59978 -11.16296 -10.96715 -10.83820 -10.71706 -10.35311 -10.13903 -10.07592 -9.80523 -9.58571 -8.72381 -8.53862 -8.35585 -7.43103 -6.44099 -4.14559 2.83409 3.20643 3.40484 3.41955 3.60710 4.31415 4.49418 4.64474 4.88379 4.98075 5.06773 5.24609 5.27650 5.31900 5.40557 5.45957 5.48772 5.69827 5.73613 5.81364 5.85922 5.93358 5.99758 6.09731 6.15476 6.18435 6.30366 6.33088 6.63243 6.65165 6.67756 6.94438 7.07067 7.26793 7.67594 7.83594 8.23594 8.39268 8.48045 8.77600 9.55958 10.94527 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.020866 B = 0.007884 C = 0.006369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.576766 B = 3550.463639 C = 4395.573210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.622 5.622 3 C 0.103 3.897 4 C 0.108 3.892 5 C -0.191 4.191 6 C 0.523 3.477 7 O -0.546 6.546 8 C -0.098 4.098 9 C -0.120 4.120 10 C -0.119 4.119 11 C 0.065 3.935 12 N -0.513 5.513 13 C 0.175 3.825 14 C -0.594 4.594 15 H 0.060 0.940 16 C 0.016 3.984 17 N -0.910 5.910 18 Si 1.071 2.929 19 H -0.283 1.283 20 H -0.287 1.287 21 H -0.288 1.288 22 H 0.054 0.946 23 H 0.071 0.929 24 H 0.070 0.930 25 H 0.078 0.922 26 H 0.093 0.907 27 H 0.112 0.888 28 H 0.098 0.902 29 H 0.059 0.941 30 H 0.074 0.926 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.068 0.932 35 H 0.024 0.976 36 H 0.092 0.908 37 H 0.027 0.973 38 H -0.012 1.012 39 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.555 0.291 12.284 12.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.357 5.357 3 C -0.019 4.019 4 C 0.016 3.984 5 C -0.233 4.233 6 C 0.311 3.689 7 O -0.424 6.424 8 C -0.135 4.135 9 C -0.158 4.158 10 C -0.157 4.157 11 C -0.062 4.062 12 N -0.236 5.236 13 C 0.050 3.950 14 C -0.632 4.632 15 H 0.078 0.922 16 C -0.188 4.188 17 N -0.546 5.546 18 Si 0.899 3.101 19 H -0.208 1.208 20 H -0.213 1.213 21 H -0.214 1.214 22 H 0.073 0.927 23 H 0.090 0.910 24 H 0.088 0.912 25 H 0.096 0.904 26 H 0.110 0.890 27 H 0.130 0.870 28 H 0.116 0.884 29 H 0.078 0.922 30 H 0.093 0.907 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.087 0.913 35 H 0.042 0.958 36 H 0.110 0.890 37 H 0.045 0.955 38 H 0.006 0.994 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.317 0.592 10.905 11.164 hybrid contribution -0.680 -1.188 1.195 1.817 sum -2.998 -0.597 12.100 12.480 Atomic orbital electron populations 1.21493 0.78530 1.02611 1.01827 1.48243 1.06274 1.07681 1.73470 1.22415 0.89368 0.86434 1.03730 1.21294 0.92444 0.89697 0.94990 1.23156 0.94436 1.00047 1.05629 1.20959 0.89395 0.84095 0.74441 1.90659 1.79023 1.21313 1.51414 1.21416 0.97065 1.01959 0.93110 1.21628 0.95006 0.99773 0.99365 1.21659 0.97644 1.00675 0.95684 1.21997 0.91786 0.98045 0.94399 1.61732 1.00345 1.52236 1.09309 1.20019 0.97966 0.95166 0.81862 1.21957 1.14141 1.33731 0.93402 0.92203 1.25844 1.00802 0.97267 0.94880 1.70809 1.15075 1.29575 1.39130 0.83508 0.74750 0.75718 0.76152 1.20838 1.21322 1.21431 0.92696 0.91024 0.91166 0.90360 0.88965 0.86989 0.88406 0.92201 0.90737 0.92330 0.92152 0.92182 0.91347 0.95783 0.88954 0.95548 0.99413 0.92300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.23 10.96 59.84 0.66 1.89 16 2 N -0.62 -9.94 3.34 -180.48 -0.60 -10.55 16 3 C 0.10 1.63 6.38 -3.37 -0.02 1.61 16 4 C 0.11 1.77 0.60 -131.55 -0.08 1.69 16 5 C -0.19 -3.35 4.58 -27.02 -0.12 -3.48 16 6 C 0.52 9.70 8.03 -10.75 -0.09 9.62 16 7 O -0.55 -11.69 17.60 5.56 0.10 -11.59 16 8 C -0.10 -1.33 4.75 -26.99 -0.13 -1.46 16 9 C -0.12 -1.54 5.80 -26.53 -0.15 -1.69 16 10 C -0.12 -1.68 6.07 -26.63 -0.16 -1.84 16 11 C 0.07 1.18 4.99 -3.76 -0.02 1.17 16 12 N -0.51 -9.96 4.57 -220.36 -1.01 -10.96 16 13 C 0.17 4.15 3.52 -4.98 -0.02 4.13 16 14 C -0.59 -15.76 8.29 -34.44 -0.29 -16.05 16 15 H 0.06 1.58 6.57 -52.49 -0.35 1.23 16 16 C 0.02 0.45 5.46 -17.82 -0.10 0.35 16 17 N -0.91 -26.88 13.65 55.43 0.76 -26.12 16 18 Si 1.07 24.41 29.90 -169.99 -5.08 19.33 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 20 H -0.29 -6.26 7.11 56.52 0.40 -5.86 16 21 H -0.29 -6.25 7.11 56.52 0.40 -5.85 16 22 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 23 H 0.07 0.90 7.93 -51.93 -0.41 0.49 16 24 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.08 1.05 7.88 -51.93 -0.41 0.64 16 26 H 0.09 1.68 5.31 -51.93 -0.28 1.40 16 27 H 0.11 2.25 5.67 -51.93 -0.29 1.95 16 28 H 0.10 1.58 6.24 -51.93 -0.32 1.26 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 31 H 0.06 0.76 6.57 -51.93 -0.34 0.42 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 35 H 0.02 0.45 7.21 -51.93 -0.37 0.07 16 36 H 0.09 1.86 6.13 -51.93 -0.32 1.54 16 37 H 0.03 0.66 5.72 -51.93 -0.30 0.37 16 38 H -0.01 -0.30 5.65 -51.93 -0.29 -0.59 16 39 H 0.27 7.88 7.18 -40.82 -0.29 7.59 16 LS Contribution 294.86 15.07 4.44 4.44 Total: -1.00 -30.79 294.86 -7.64 -38.43 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: -5.73 Total: 1.08 kcal Atomic # 6 Polarization: -3.54 SS G_CDS: -0.52 Total: -4.06 kcal Atomic # 7 Polarization: -46.78 SS G_CDS: -0.85 Total: -47.63 kcal Atomic # 8 Polarization: -11.69 SS G_CDS: 0.10 Total: -11.59 kcal Atomic # 14 Polarization: 24.41 SS G_CDS: -5.08 Total: 19.33 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -30.79 -7.64 -38.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274032865.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.459 kcal (2) G-P(sol) polarization free energy of solvation -30.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds