Wall clock time and date at job start Sun Mar 29 2020 23:18:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.33347 * 117.28950 * 2 1 4 4 O 1.21287 * 118.79676 * 359.77862 * 3 2 1 5 5 C 1.50334 * 122.40216 * 179.80457 * 3 2 1 6 6 C 1.52888 * 109.30895 * 338.32122 * 5 3 2 7 7 C 1.54890 * 109.58842 * 52.98223 * 6 5 3 8 8 H 1.08999 * 111.45386 * 58.96078 * 7 6 5 9 9 C 1.44638 * 117.28918 * 179.97438 * 2 1 3 10 10 H 1.08998 * 110.33258 * 45.55454 * 9 2 1 11 11 C 1.54880 * 110.63168 * 283.06970 * 9 2 1 12 12 C 1.54525 * 102.59484 * 202.59491 * 11 9 2 13 13 N 1.47666 * 107.04936 * 22.99839 * 12 11 9 14 14 C 1.46903 * 110.99757 * 123.12600 * 13 12 11 15 15 C 1.52999 * 109.47225 * 55.31554 * 14 13 12 16 16 C 1.50697 * 109.47072 * 176.99278 * 15 14 13 17 17 H 1.07998 * 119.99888 * 359.97438 * 16 15 14 18 18 C 1.37878 * 120.00005 * 179.97438 * 16 15 14 19 19 N 1.31519 * 120.00086 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00040 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46819 * 60.00378 * 20 18 16 22 22 H 1.48500 * 109.47273 * 179.97438 * 20 18 16 23 23 H 1.48493 * 109.47353 * 300.00320 * 20 18 16 24 24 H 1.09007 * 109.47270 * 270.01667 * 1 2 3 25 25 H 1.08990 * 109.47609 * 30.02193 * 1 2 3 26 26 H 1.09003 * 109.47195 * 150.02205 * 1 2 3 27 27 H 1.09004 * 109.49962 * 98.26670 * 5 3 2 28 28 H 1.08999 * 109.49994 * 218.33005 * 5 3 2 29 29 H 1.09002 * 109.49848 * 172.81275 * 6 5 3 30 30 H 1.09008 * 109.49150 * 292.86344 * 6 5 3 31 31 H 1.08999 * 110.78209 * 320.86607 * 11 9 2 32 32 H 1.08998 * 110.78863 * 84.31299 * 11 9 2 33 33 H 1.08998 * 109.92323 * 142.35011 * 12 11 9 34 34 H 1.09005 * 109.91325 * 263.65217 * 12 11 9 35 35 H 1.08995 * 109.47293 * 175.31565 * 14 13 12 36 36 H 1.09000 * 109.46914 * 295.31451 * 14 13 12 37 37 H 1.09002 * 109.47142 * 296.99151 * 15 14 13 38 38 H 1.08998 * 109.47154 * 56.98936 * 15 14 13 39 39 H 0.96998 * 119.99821 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.0764 1.1851 0.0000 4 8 1.3997 2.1916 -0.0041 5 6 3.5737 1.3190 0.0043 6 6 4.1951 0.0294 0.5412 7 6 3.6457 -1.1816 -0.2529 8 1 3.8649 -1.0932 -1.3170 9 6 2.1281 -1.2854 0.0006 10 1 1.6657 -1.9504 -0.7288 11 6 2.0870 -1.9200 1.4128 12 6 3.2757 -2.9066 1.3735 13 7 4.2023 -2.4268 0.3287 14 6 5.5441 -2.1962 0.8806 15 6 6.0421 -3.4730 1.5607 16 6 7.4472 -3.2598 2.0621 17 1 7.9361 -2.3088 1.9104 18 6 8.1084 -4.2787 2.7145 19 7 7.5131 -5.4369 2.8987 20 14 9.8503 -4.0146 3.3353 21 1 9.8635 -2.8957 4.3115 22 1 10.3332 -5.2534 3.9967 23 1 10.7386 -3.6846 2.1921 24 1 -0.3634 0.0003 1.0277 25 1 -0.3634 0.8897 -0.5141 26 1 -0.3634 -0.8902 -0.5135 27 1 3.9261 1.4970 -1.0117 28 1 3.8624 2.1552 0.6411 29 1 5.2783 0.0726 0.4273 30 1 3.9446 -0.0833 1.5961 31 1 2.2384 -1.1625 2.1818 32 1 1.1485 -2.4512 1.5710 33 1 3.7800 -2.9193 2.3398 34 1 2.9203 -3.9064 1.1240 35 1 6.2262 -1.9236 0.0754 36 1 5.5026 -1.3880 1.6109 37 1 5.3899 -3.7159 2.3997 38 1 6.0328 -4.2939 0.8438 39 1 7.9785 -6.1538 3.3574 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274039813.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:18:27 Heat of formation + Delta-G solvation = -26.932721 kcal Electronic energy + Delta-G solvation = -19358.278414 eV Core-core repulsion = 16493.663125 eV Total energy + Delta-G solvation = -2864.615289 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.04233 -38.68189 -35.53355 -33.60611 -33.12783 -31.40150 -28.78296 -27.82371 -26.86601 -24.51427 -23.70250 -21.96291 -21.60308 -19.22342 -18.17945 -17.02764 -16.51297 -16.43922 -15.75286 -15.34255 -14.64375 -14.44618 -14.17995 -13.76201 -13.55558 -13.09704 -12.84094 -12.66844 -12.34077 -12.22553 -11.76079 -11.74683 -11.66817 -11.23841 -11.00937 -10.90685 -10.83258 -10.60917 -10.51162 -9.97763 -9.65956 -9.41313 -9.18200 -8.81112 -8.39125 -7.81633 -6.03966 -4.06671 2.55495 2.89647 3.30743 3.35628 3.37586 4.21010 4.37058 4.44450 4.56031 4.65310 4.85955 5.07217 5.12816 5.19515 5.25861 5.32079 5.36722 5.40293 5.50964 5.65631 5.67332 5.75747 5.81244 5.94895 6.11790 6.17662 6.22165 6.27665 6.39184 6.43905 6.86231 7.30934 7.36615 7.42247 7.68287 7.81130 8.01194 8.06952 8.37324 8.99992 9.57375 11.07306 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.040863 B = 0.004828 C = 0.004480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.043798 B = 5797.715302 C = 6248.352966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.595 5.595 3 C 0.519 3.481 4 O -0.559 6.559 5 C -0.132 4.132 6 C -0.151 4.151 7 C 0.068 3.932 8 H 0.099 0.901 9 C 0.135 3.865 10 H 0.096 0.904 11 C -0.154 4.154 12 C 0.041 3.959 13 N -0.519 5.519 14 C 0.052 3.948 15 C 0.024 3.976 16 C -0.523 4.523 17 H 0.054 0.946 18 C 0.060 3.940 19 N -0.893 5.893 20 Si 0.892 3.108 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.276 1.276 24 H 0.054 0.946 25 H 0.078 0.922 26 H 0.069 0.931 27 H 0.099 0.901 28 H 0.099 0.901 29 H 0.088 0.912 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.064 0.936 36 H 0.031 0.969 37 H 0.018 0.982 38 H 0.025 0.975 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.625 8.210 -5.564 15.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.326 5.326 3 C 0.308 3.692 4 O -0.439 6.439 5 C -0.172 4.172 6 C -0.190 4.190 7 C -0.041 4.041 8 H 0.117 0.883 9 C 0.030 3.970 10 H 0.114 0.886 11 C -0.193 4.193 12 C -0.087 4.087 13 N -0.242 5.242 14 C -0.074 4.074 15 C -0.013 4.013 16 C -0.562 4.562 17 H 0.072 0.928 18 C -0.142 4.142 19 N -0.532 5.532 20 Si 0.720 3.280 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.202 1.202 24 H 0.073 0.927 25 H 0.097 0.903 26 H 0.088 0.912 27 H 0.118 0.882 28 H 0.118 0.882 29 H 0.107 0.893 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.096 0.904 35 H 0.083 0.917 36 H 0.049 0.951 37 H 0.036 0.964 38 H 0.043 0.957 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -11.852 8.147 -5.875 15.536 hybrid contribution 0.940 0.514 1.097 1.533 sum -10.912 8.662 -4.779 14.728 Atomic orbital electron populations 1.21712 0.79865 1.03109 1.02039 1.46854 1.07500 1.05744 1.72524 1.20280 0.91210 0.82436 0.75303 1.90692 1.66524 1.35671 1.50985 1.21614 0.90988 1.00228 1.04403 1.22599 1.02281 0.93457 1.00640 1.23150 0.91367 0.89751 0.99859 0.88304 1.21807 0.93780 0.83365 0.98050 0.88591 1.23283 1.00078 0.99400 0.96567 1.22915 0.91589 0.98162 0.96020 1.64014 1.03472 1.25256 1.31496 1.22594 0.86840 1.00518 0.97478 1.19184 0.95378 0.91563 0.95202 1.21121 0.99421 0.98752 1.36898 0.92811 1.24981 0.98004 0.95165 0.96047 1.69955 1.37501 1.03389 1.42356 0.86662 0.84851 0.77429 0.79079 1.20303 1.21269 1.20190 0.92706 0.90338 0.91246 0.88234 0.88213 0.89338 0.91023 0.91228 0.90651 0.90933 0.90369 0.91746 0.95125 0.96387 0.95686 0.92906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.76 10.07 59.85 0.60 1.36 16 2 N -0.59 -7.11 2.88 -173.99 -0.50 -7.61 16 3 C 0.52 7.09 7.49 -11.80 -0.09 7.00 16 4 O -0.56 -9.39 16.20 5.55 0.09 -9.30 16 5 C -0.13 -1.52 6.09 -28.12 -0.17 -1.70 16 6 C -0.15 -1.91 3.82 -25.79 -0.10 -2.01 16 7 C 0.07 0.89 3.60 -65.32 -0.24 0.65 16 8 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 9 C 0.13 1.57 3.14 -67.30 -0.21 1.35 16 10 H 0.10 1.02 8.01 -51.93 -0.42 0.60 16 11 C -0.15 -1.87 5.99 -24.94 -0.15 -2.02 16 12 C 0.04 0.63 6.15 -2.60 -0.02 0.61 16 13 N -0.52 -8.47 5.27 -221.98 -1.17 -9.64 16 14 C 0.05 1.02 3.72 -3.82 -0.01 1.00 16 15 C 0.02 0.59 4.69 -27.88 -0.13 0.46 16 16 C -0.52 -14.30 9.11 -34.44 -0.31 -14.61 16 17 H 0.05 1.42 7.74 -52.49 -0.41 1.01 16 18 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 19 N -0.89 -26.23 13.29 55.43 0.74 -25.49 16 20 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 24 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.08 0.86 7.14 -51.93 -0.37 0.49 16 26 H 0.07 0.54 7.90 -51.93 -0.41 0.13 16 27 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.09 1.15 6.68 -51.93 -0.35 0.81 16 30 H 0.07 0.99 6.53 -51.92 -0.34 0.65 16 31 H 0.07 0.90 7.34 -51.93 -0.38 0.52 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.07 1.27 6.02 -51.93 -0.31 0.95 16 34 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.06 1.25 8.08 -51.93 -0.42 0.83 16 36 H 0.03 0.58 5.95 -51.93 -0.31 0.27 16 37 H 0.02 0.47 6.33 -51.93 -0.33 0.14 16 38 H 0.02 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 300.84 15.07 4.53 4.53 Total: -1.00 -30.88 300.84 -8.39 -39.26 By element: Atomic # 1 Polarization: 4.52 SS G_CDS: -6.13 Total: -1.62 kcal Atomic # 6 Polarization: -5.38 SS G_CDS: -0.92 Total: -6.31 kcal Atomic # 7 Polarization: -41.81 SS G_CDS: -0.93 Total: -42.74 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: 0.09 Total: -9.30 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -30.88 -8.39 -39.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274039813.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.332 kcal (2) G-P(sol) polarization free energy of solvation -30.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds