Wall clock time and date at job start Sun Mar 29 2020 23:05:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46846 * 124.36681 * 2 1 4 4 C 1.54643 * 105.50178 * 196.61445 * 3 2 1 5 5 C 1.53896 * 101.58799 * 335.22157 * 4 3 2 6 6 C 1.53596 * 110.33748 * 143.78918 * 5 4 3 7 7 C 1.55308 * 102.79842 * 99.54808 * 6 5 4 8 8 C 1.54974 * 101.74129 * 35.03572 * 7 6 5 9 9 N 1.46652 * 110.87442 * 263.47479 * 5 4 3 10 10 C 1.46904 * 110.99820 * 115.73403 * 9 5 4 11 11 C 1.53002 * 109.47070 * 169.99915 * 10 9 5 12 12 C 1.50699 * 109.47453 * 179.97438 * 11 10 9 13 13 H 1.08007 * 119.99420 * 359.97438 * 12 11 10 14 14 C 1.37876 * 120.00148 * 180.02562 * 12 11 10 15 15 N 1.31506 * 119.99908 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 119.99623 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47151 * 60.00050 * 16 14 12 18 18 H 1.48503 * 109.46772 * 179.97438 * 16 14 12 19 19 H 1.48493 * 109.47322 * 299.99777 * 16 14 12 20 20 C 1.34658 * 124.36750 * 179.69917 * 2 1 3 21 21 O 1.21287 * 125.07441 * 359.42064 * 20 2 1 22 22 H 1.08996 * 109.47354 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.47350 * 120.03039 * 1 2 3 24 24 H 1.09005 * 109.46853 * 240.02277 * 1 2 3 25 25 H 1.09000 * 110.23593 * 315.62281 * 3 2 1 26 26 H 1.08999 * 110.23974 * 77.51788 * 3 2 1 27 27 H 1.08993 * 111.00157 * 93.29748 * 4 3 2 28 28 H 1.09001 * 110.99828 * 217.10952 * 4 3 2 29 29 H 1.08998 * 110.74835 * 217.87861 * 6 5 4 30 30 H 1.09007 * 110.74622 * 341.21727 * 6 5 4 31 31 H 1.08997 * 110.97610 * 276.92211 * 7 6 5 32 32 H 1.09004 * 110.97451 * 153.14806 * 7 6 5 33 33 H 1.09000 * 110.36719 * 204.50150 * 8 7 6 34 34 H 1.09004 * 110.36481 * 82.17866 * 8 7 6 35 35 H 1.09000 * 109.47078 * 289.99366 * 10 9 5 36 36 H 1.08999 * 109.47498 * 50.00280 * 10 9 5 37 37 H 1.09005 * 109.47416 * 300.00228 * 11 10 9 38 38 H 1.09003 * 109.47367 * 59.99695 * 11 10 9 39 39 H 0.97004 * 119.99947 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2940 1.2121 0.0000 4 6 3.7060 0.7472 -0.4261 5 6 3.6822 -0.7343 -0.0104 6 6 4.4598 -1.5860 -1.0249 7 6 5.8341 -1.7815 -0.3283 8 6 5.4214 -1.8752 1.1626 9 7 4.3012 -0.9176 1.3064 10 6 3.3194 -1.3995 2.2872 11 6 4.0419 -1.8147 3.5703 12 6 3.0347 -2.3084 4.5767 13 1 1.9842 -2.3240 4.3263 14 6 3.4541 -2.7392 5.8175 15 7 4.7332 -2.7197 6.1225 16 14 2.2055 -3.3505 7.0651 17 1 1.4788 -4.5188 6.5065 18 1 2.9068 -3.7536 8.3105 19 1 1.2385 -2.2656 7.3700 20 6 2.2252 -1.1115 0.0058 21 8 1.7993 -2.2470 0.0218 22 1 -0.3634 1.0276 -0.0005 23 1 -0.3634 -0.5143 -0.8897 24 1 -0.3633 -0.5135 0.8902 25 1 1.9034 1.9360 -0.7153 26 1 2.3244 1.6482 0.9985 27 1 3.8424 0.8488 -1.5027 28 1 4.4774 1.2935 0.1167 29 1 3.9667 -2.5452 -1.1822 30 1 4.5773 -1.0518 -1.9678 31 1 6.4841 -0.9236 -0.5000 32 1 6.3118 -2.7035 -0.6596 33 1 6.2529 -1.5859 1.8053 34 1 5.0898 -2.8857 1.4016 35 1 2.6092 -0.6036 2.5114 36 1 2.7864 -2.2571 1.8766 37 1 4.7522 -2.6106 3.3461 38 1 4.5749 -0.9572 3.9810 39 1 5.0283 -3.0231 6.9953 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274040595.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:05:37 Heat of formation + Delta-G solvation = -23.361031 kcal Electronic energy + Delta-G solvation = -19798.014505 eV Core-core repulsion = 16933.554096 eV Total energy + Delta-G solvation = -2864.460409 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.08952 -37.51005 -36.16405 -33.75020 -32.00864 -31.59322 -28.46502 -27.85311 -26.66683 -24.48513 -23.32806 -21.74277 -20.88752 -19.91355 -18.44673 -16.75442 -16.22629 -15.96687 -15.42427 -15.10013 -14.50238 -14.41740 -13.89310 -13.50101 -13.40281 -13.23699 -12.54136 -12.40843 -12.20771 -12.07834 -12.02281 -11.69447 -11.33804 -11.09516 -10.92068 -10.77415 -10.69823 -10.49695 -10.41778 -9.96187 -9.61278 -9.32474 -9.10592 -8.58442 -8.32463 -7.72495 -5.96734 -3.98349 2.75913 3.14028 3.36294 3.39732 3.43356 4.31451 4.42421 4.50589 4.63558 4.86292 4.97802 5.19206 5.23776 5.30492 5.36743 5.39328 5.50637 5.54542 5.74332 5.77696 5.90917 5.95023 6.00629 6.06010 6.14814 6.28566 6.44808 6.48698 6.55776 6.66411 6.96655 7.21018 7.41611 7.48934 7.75874 7.88199 8.07486 8.38362 8.47015 9.07502 9.64826 11.14728 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.022522 B = 0.006920 C = 0.005872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.906713 B = 4045.114341 C = 4767.016749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.626 5.626 3 C 0.105 3.895 4 C -0.115 4.115 5 C 0.065 3.935 6 C -0.122 4.122 7 C -0.127 4.127 8 C 0.044 3.956 9 N -0.497 5.497 10 C 0.039 3.961 11 C 0.028 3.972 12 C -0.519 4.519 13 H 0.052 0.948 14 C 0.059 3.941 15 N -0.894 5.894 16 Si 0.892 3.108 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.277 1.277 20 C 0.520 3.480 21 O -0.523 6.523 22 H 0.074 0.926 23 H 0.057 0.943 24 H 0.062 0.938 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.078 0.922 28 H 0.101 0.899 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.086 0.914 34 H 0.055 0.945 35 H 0.058 0.942 36 H 0.045 0.955 37 H 0.020 0.980 38 H 0.023 0.977 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.644 8.529 -15.636 17.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.362 5.362 3 C -0.018 4.018 4 C -0.153 4.153 5 C -0.029 4.029 6 C -0.161 4.161 7 C -0.165 4.165 8 C -0.083 4.083 9 N -0.222 5.222 10 C -0.088 4.088 11 C -0.009 4.009 12 C -0.558 4.558 13 H 0.070 0.930 14 C -0.142 4.142 15 N -0.534 5.534 16 Si 0.720 3.280 17 H -0.203 1.203 18 H -0.212 1.212 19 H -0.203 1.203 20 C 0.306 3.694 21 O -0.398 6.398 22 H 0.093 0.907 23 H 0.076 0.924 24 H 0.080 0.920 25 H 0.091 0.909 26 H 0.092 0.908 27 H 0.097 0.903 28 H 0.119 0.881 29 H 0.095 0.905 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.104 0.896 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.063 0.937 37 H 0.038 0.962 38 H 0.041 0.959 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.675 8.361 -15.283 17.501 hybrid contribution -1.157 -0.996 0.641 1.656 sum -2.832 7.365 -14.641 16.632 Atomic orbital electron populations 1.21483 0.78450 1.02202 1.02102 1.48236 1.06222 1.07646 1.74051 1.22145 0.90756 0.86914 1.01962 1.22638 0.96668 0.94955 1.01085 1.22023 0.91171 0.96491 0.93217 1.22689 0.96029 1.00189 0.97210 1.22765 0.96191 1.01909 0.95672 1.23131 0.94325 0.95641 0.95194 1.64002 1.09406 1.45655 1.03117 1.22780 0.94020 0.98092 0.93907 1.19135 0.95623 0.96629 0.89544 1.21125 0.93519 1.42574 0.98570 0.92976 1.24967 0.95192 0.95823 0.98238 1.69954 1.13909 1.47650 1.21851 0.86658 0.81437 0.79316 0.80617 1.20257 1.21215 1.20267 1.20916 0.89358 0.84404 0.74719 1.90702 1.78662 1.20985 1.49489 0.90719 0.92388 0.91968 0.90851 0.90777 0.90338 0.88068 0.90497 0.90702 0.90783 0.90907 0.89611 0.92617 0.92363 0.93723 0.96188 0.95902 0.92972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.20 10.94 59.85 0.65 1.86 16 2 N -0.63 -9.13 3.34 -180.37 -0.60 -9.73 16 3 C 0.11 1.20 7.31 -2.99 -0.02 1.18 16 4 C -0.12 -1.34 6.42 -25.40 -0.16 -1.50 16 5 C 0.06 1.02 0.99 -132.20 -0.13 0.89 16 6 C -0.12 -1.70 6.05 -25.20 -0.15 -1.85 16 7 C -0.13 -1.70 7.08 -24.47 -0.17 -1.87 16 8 C 0.04 0.79 5.33 -2.14 -0.01 0.78 16 9 N -0.50 -9.33 4.95 -217.43 -1.08 -10.40 16 10 C 0.04 0.89 3.91 -3.82 -0.01 0.88 16 11 C 0.03 0.76 4.65 -27.88 -0.13 0.63 16 12 C -0.52 -15.42 9.11 -34.44 -0.31 -15.73 16 13 H 0.05 1.54 7.74 -52.48 -0.41 1.13 16 14 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 15 N -0.89 -27.41 13.29 55.43 0.74 -26.67 16 16 Si 0.89 22.43 29.54 -169.99 -5.02 17.41 16 17 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 18 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 19 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 20 C 0.52 9.35 4.86 -11.13 -0.05 9.29 16 21 O -0.52 -11.45 15.67 5.55 0.09 -11.36 16 22 H 0.07 0.65 8.07 -51.93 -0.42 0.23 16 23 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.08 0.73 7.45 -51.93 -0.39 0.34 16 28 H 0.10 1.16 8.07 -51.93 -0.42 0.74 16 29 H 0.08 1.21 7.51 -51.93 -0.39 0.82 16 30 H 0.07 0.83 7.39 -51.93 -0.38 0.44 16 31 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 34 H 0.06 1.12 7.03 -51.93 -0.37 0.75 16 35 H 0.06 1.36 7.95 -51.93 -0.41 0.95 16 36 H 0.04 1.13 5.81 -51.93 -0.30 0.83 16 37 H 0.02 0.56 6.49 -51.93 -0.34 0.23 16 38 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 307.19 15.07 4.63 4.63 Total: -1.00 -34.13 307.19 -8.19 -42.32 By element: Atomic # 1 Polarization: 3.96 SS G_CDS: -6.34 Total: -2.38 kcal Atomic # 6 Polarization: -3.21 SS G_CDS: -0.61 Total: -3.82 kcal Atomic # 7 Polarization: -45.86 SS G_CDS: -0.94 Total: -46.80 kcal Atomic # 8 Polarization: -11.45 SS G_CDS: 0.09 Total: -11.36 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -34.13 -8.19 -42.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274040595.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.960 kcal (2) G-P(sol) polarization free energy of solvation -34.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds