Wall clock time and date at job start Sun Mar 29 2020 23:05:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46846 * 124.36681 * 2 1 4 4 C 1.54643 * 105.50178 * 196.61445 * 3 2 1 5 5 C 1.53896 * 101.58799 * 335.22157 * 4 3 2 6 6 C 1.53596 * 110.33748 * 143.78918 * 5 4 3 7 7 C 1.55308 * 102.79842 * 99.54808 * 6 5 4 8 8 C 1.54974 * 101.74129 * 35.03572 * 7 6 5 9 9 N 1.46652 * 110.87442 * 263.47479 * 5 4 3 10 10 C 1.46904 * 110.99820 * 115.73403 * 9 5 4 11 11 C 1.53002 * 109.47070 * 169.99915 * 10 9 5 12 12 C 1.50699 * 109.47453 * 179.97438 * 11 10 9 13 13 H 1.08007 * 119.99420 * 359.97438 * 12 11 10 14 14 C 1.37876 * 120.00148 * 180.02562 * 12 11 10 15 15 N 1.31506 * 119.99908 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 119.99623 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47151 * 60.00050 * 16 14 12 18 18 H 1.48503 * 109.46772 * 179.97438 * 16 14 12 19 19 H 1.48493 * 109.47322 * 299.99777 * 16 14 12 20 20 C 1.34658 * 124.36750 * 179.69917 * 2 1 3 21 21 O 1.21287 * 125.07441 * 359.42064 * 20 2 1 22 22 H 1.08996 * 109.47354 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.47350 * 120.03039 * 1 2 3 24 24 H 1.09005 * 109.46853 * 240.02277 * 1 2 3 25 25 H 1.09000 * 110.23593 * 315.62281 * 3 2 1 26 26 H 1.08999 * 110.23974 * 77.51788 * 3 2 1 27 27 H 1.08993 * 111.00157 * 93.29748 * 4 3 2 28 28 H 1.09001 * 110.99828 * 217.10952 * 4 3 2 29 29 H 1.08998 * 110.74835 * 217.87861 * 6 5 4 30 30 H 1.09007 * 110.74622 * 341.21727 * 6 5 4 31 31 H 1.08997 * 110.97610 * 276.92211 * 7 6 5 32 32 H 1.09004 * 110.97451 * 153.14806 * 7 6 5 33 33 H 1.09000 * 110.36719 * 204.50150 * 8 7 6 34 34 H 1.09004 * 110.36481 * 82.17866 * 8 7 6 35 35 H 1.09000 * 109.47078 * 289.99366 * 10 9 5 36 36 H 1.08999 * 109.47498 * 50.00280 * 10 9 5 37 37 H 1.09005 * 109.47416 * 300.00228 * 11 10 9 38 38 H 1.09003 * 109.47367 * 59.99695 * 11 10 9 39 39 H 0.97004 * 119.99947 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2940 1.2121 0.0000 4 6 3.7060 0.7472 -0.4261 5 6 3.6822 -0.7343 -0.0104 6 6 4.4598 -1.5860 -1.0249 7 6 5.8341 -1.7815 -0.3283 8 6 5.4214 -1.8752 1.1626 9 7 4.3012 -0.9176 1.3064 10 6 3.3194 -1.3995 2.2872 11 6 4.0419 -1.8147 3.5703 12 6 3.0347 -2.3084 4.5767 13 1 1.9842 -2.3240 4.3263 14 6 3.4541 -2.7392 5.8175 15 7 4.7332 -2.7197 6.1225 16 14 2.2055 -3.3505 7.0651 17 1 1.4788 -4.5188 6.5065 18 1 2.9068 -3.7536 8.3105 19 1 1.2385 -2.2656 7.3700 20 6 2.2252 -1.1115 0.0058 21 8 1.7993 -2.2470 0.0218 22 1 -0.3634 1.0276 -0.0005 23 1 -0.3634 -0.5143 -0.8897 24 1 -0.3633 -0.5135 0.8902 25 1 1.9034 1.9360 -0.7153 26 1 2.3244 1.6482 0.9985 27 1 3.8424 0.8488 -1.5027 28 1 4.4774 1.2935 0.1167 29 1 3.9667 -2.5452 -1.1822 30 1 4.5773 -1.0518 -1.9678 31 1 6.4841 -0.9236 -0.5000 32 1 6.3118 -2.7035 -0.6596 33 1 6.2529 -1.5859 1.8053 34 1 5.0898 -2.8857 1.4016 35 1 2.6092 -0.6036 2.5114 36 1 2.7864 -2.2571 1.8766 37 1 4.7522 -2.6106 3.3461 38 1 4.5749 -0.9572 3.9810 39 1 5.0283 -3.0231 6.9953 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274040595.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:05:36 Heat of formation + Delta-G solvation = -48.354583 kcal Electronic energy + Delta-G solvation = -19799.098307 eV Core-core repulsion = 16933.554096 eV Total energy + Delta-G solvation = -2865.544211 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.37049 -38.89585 -37.46069 -35.74921 -33.83762 -32.75846 -30.34174 -29.04689 -27.74703 -26.41487 -24.70422 -23.24802 -22.08705 -21.51231 -19.81728 -18.67067 -17.63300 -17.37206 -16.86218 -16.45822 -16.37458 -15.93117 -15.26581 -14.82004 -14.74084 -14.58135 -14.21979 -13.82349 -13.60292 -13.39028 -13.17450 -13.01373 -12.94960 -12.73823 -12.58840 -12.37238 -12.25493 -11.99251 -11.80986 -11.52519 -11.38090 -11.33632 -10.99219 -10.61844 -9.75384 -9.29780 -8.26773 -6.38431 1.33058 1.36956 1.39879 1.45241 2.06452 2.34539 2.97135 3.05596 3.25937 3.54011 3.70068 3.90758 4.16124 4.18826 4.29013 4.35189 4.37651 4.45714 4.51954 4.60055 4.71186 4.78596 4.83278 4.87798 4.91847 4.97637 5.05028 5.13101 5.19661 5.28821 5.34957 5.55524 5.61495 5.67906 5.90287 6.01969 6.08357 6.21792 6.74959 7.08896 7.29918 8.84967 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.022522 B = 0.006920 C = 0.005872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.906713 B = 4045.114341 C = 4767.016749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.624 5.624 3 C 0.099 3.901 4 C -0.104 4.104 5 C 0.052 3.948 6 C -0.119 4.119 7 C -0.110 4.110 8 C 0.036 3.964 9 N -0.495 5.495 10 C 0.067 3.933 11 C 0.040 3.960 12 C -0.551 4.551 13 H 0.045 0.955 14 C 0.008 3.992 15 N -0.925 5.925 16 Si 0.964 3.036 17 H -0.273 1.273 18 H -0.273 1.273 19 H -0.265 1.265 20 C 0.501 3.499 21 O -0.579 6.579 22 H 0.116 0.884 23 H 0.063 0.937 24 H 0.037 0.963 25 H 0.119 0.881 26 H 0.067 0.933 27 H 0.116 0.884 28 H 0.108 0.892 29 H 0.049 0.951 30 H 0.117 0.883 31 H 0.104 0.896 32 H 0.087 0.913 33 H 0.078 0.922 34 H 0.018 0.982 35 H 0.051 0.949 36 H 0.016 0.984 37 H -0.002 1.002 38 H 0.000 1.000 39 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.822 10.561 -17.086 20.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.357 5.357 3 C -0.023 4.023 4 C -0.142 4.142 5 C -0.041 4.041 6 C -0.157 4.157 7 C -0.148 4.148 8 C -0.091 4.091 9 N -0.220 5.220 10 C -0.061 4.061 11 C 0.003 3.997 12 C -0.589 4.589 13 H 0.064 0.936 14 C -0.191 4.191 15 N -0.564 5.564 16 Si 0.788 3.212 17 H -0.198 1.198 18 H -0.198 1.198 19 H -0.190 1.190 20 C 0.289 3.711 21 O -0.458 6.458 22 H 0.134 0.866 23 H 0.082 0.918 24 H 0.056 0.944 25 H 0.137 0.863 26 H 0.085 0.915 27 H 0.135 0.865 28 H 0.126 0.874 29 H 0.068 0.932 30 H 0.135 0.865 31 H 0.123 0.877 32 H 0.106 0.894 33 H 0.097 0.903 34 H 0.036 0.964 35 H 0.069 0.931 36 H 0.034 0.966 37 H 0.016 0.984 38 H 0.019 0.981 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.853 10.452 -16.751 19.831 hybrid contribution -1.097 -1.605 1.086 2.227 sum -2.950 8.847 -15.665 18.231 Atomic orbital electron populations 1.21675 0.77253 1.04624 1.01238 1.48488 1.07372 1.07829 1.71992 1.22454 0.90518 0.86270 1.03044 1.22716 0.96940 0.91052 1.03448 1.22349 0.89958 1.00014 0.91783 1.22728 0.95306 0.99181 0.98522 1.22742 0.96525 1.04079 0.91456 1.23171 0.93747 0.93353 0.98873 1.63998 1.08575 1.44961 1.04444 1.22229 0.94009 0.96591 0.93273 1.18923 0.94874 0.94796 0.91156 1.21475 0.93687 1.43811 0.99968 0.93624 1.25896 0.97448 0.95513 1.00258 1.70068 1.15835 1.47864 1.22677 0.85529 0.78848 0.78948 0.77911 1.19818 1.19795 1.18982 1.21426 0.90837 0.84415 0.74455 1.90657 1.79724 1.23280 1.52162 0.86584 0.91826 0.94370 0.86287 0.91501 0.86529 0.87368 0.93195 0.86470 0.87707 0.89398 0.90338 0.96377 0.93082 0.96574 0.98390 0.98119 0.92445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.14 10.94 127.77 1.40 3.54 16 2 N -0.62 -17.32 3.34 -843.03 -2.82 -20.14 16 3 C 0.10 1.92 7.31 86.87 0.64 2.55 16 4 C -0.10 -2.01 6.42 31.46 0.20 -1.81 16 5 C 0.05 1.58 0.99 3.27 0.00 1.58 16 6 C -0.12 -3.07 6.05 31.59 0.19 -2.88 16 7 C -0.11 -2.74 7.08 32.06 0.23 -2.51 16 8 C 0.04 1.33 5.33 86.75 0.46 1.79 16 9 N -0.49 -18.94 4.95 -841.81 -4.17 -23.10 16 10 C 0.07 3.25 3.91 86.30 0.34 3.59 16 11 C 0.04 2.29 4.65 29.85 0.14 2.43 16 12 C -0.55 -34.12 9.11 25.60 0.23 -33.89 16 13 H 0.05 2.81 7.74 -2.91 -0.02 2.79 16 14 C 0.01 0.46 5.46 84.66 0.46 0.92 16 15 N -0.93 -57.98 13.29 21.45 0.28 -57.69 16 16 Si 0.96 46.58 29.54 68.60 2.03 48.61 16 17 H -0.27 -12.96 7.11 99.48 0.71 -12.25 16 18 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 19 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 20 C 0.50 18.18 4.86 87.62 0.43 18.60 16 21 O -0.58 -26.65 15.67 -3.05 -0.05 -26.69 16 22 H 0.12 1.65 8.07 -2.39 -0.02 1.63 16 23 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 24 H 0.04 1.05 8.14 -2.38 -0.02 1.03 16 25 H 0.12 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.12 1.45 7.45 -2.39 -0.02 1.43 16 28 H 0.11 2.03 8.07 -2.39 -0.02 2.01 16 29 H 0.05 1.57 7.51 -2.39 -0.02 1.55 16 30 H 0.12 2.04 7.39 -2.38 -0.02 2.02 16 31 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.09 1.94 8.14 -2.38 -0.02 1.92 16 33 H 0.08 2.93 8.14 -2.39 -0.02 2.91 16 34 H 0.02 0.78 7.03 -2.38 -0.02 0.76 16 35 H 0.05 2.50 7.95 -2.39 -0.02 2.48 16 36 H 0.02 0.88 5.81 -2.39 -0.01 0.87 16 37 H 0.00 -0.13 6.49 -2.38 -0.02 -0.15 16 38 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 39 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 Total: -1.00 -79.60 307.19 1.01 -78.59 By element: Atomic # 1 Polarization: 5.51 SS G_CDS: 1.02 Total: 6.52 kcal Atomic # 6 Polarization: -10.81 SS G_CDS: 4.72 Total: -6.09 kcal Atomic # 7 Polarization: -94.23 SS G_CDS: -6.70 Total: -100.94 kcal Atomic # 8 Polarization: -26.65 SS G_CDS: -0.05 Total: -26.69 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 2.03 Total: 48.61 kcal Total: -79.60 1.01 -78.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274040595.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.237 kcal (2) G-P(sol) polarization free energy of solvation -79.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds