Wall clock time and date at job start Sun Mar 29 2020 23:05:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46852 * 124.36881 * 2 1 4 4 C 1.54646 * 105.58011 * 196.89310 * 3 2 1 5 5 C 1.53879 * 101.58285 * 335.20416 * 4 3 2 6 6 C 1.53250 * 110.56908 * 263.99058 * 5 4 3 7 7 C 1.54798 * 104.80623 * 239.73169 * 6 5 4 8 8 C 1.55003 * 102.94667 * 21.88991 * 7 6 5 9 9 N 1.47073 * 110.68612 * 144.43308 * 5 4 3 10 10 C 1.46895 * 111.00273 * 336.02044 * 9 5 4 11 11 C 1.52999 * 109.47275 * 177.96060 * 10 9 5 12 12 C 1.50697 * 109.47585 * 180.02562 * 11 10 9 13 13 H 1.08003 * 119.99556 * 359.97438 * 12 11 10 14 14 C 1.37870 * 120.00216 * 180.02562 * 12 11 10 15 15 N 1.31521 * 119.99874 * 179.97438 * 14 12 11 16 16 Si 1.86797 * 120.00351 * 359.97438 * 14 12 11 17 17 H 1.48497 * 109.47072 * 89.99722 * 16 14 12 18 18 H 1.48500 * 109.47292 * 210.00122 * 16 14 12 19 19 H 1.48500 * 109.46967 * 329.99975 * 16 14 12 20 20 C 1.34869 * 124.48591 * 179.97438 * 2 1 3 21 21 O 1.21284 * 125.04612 * 359.12162 * 20 2 1 22 22 H 1.08993 * 109.46839 * 0.02562 * 1 2 3 23 23 H 1.08998 * 109.46828 * 120.02044 * 1 2 3 24 24 H 1.09000 * 109.46937 * 240.02192 * 1 2 3 25 25 H 1.08998 * 110.23625 * 77.84318 * 3 2 1 26 26 H 1.09005 * 110.23995 * 315.94480 * 3 2 1 27 27 H 1.09005 * 111.00463 * 93.27341 * 4 3 2 28 28 H 1.09001 * 111.00731 * 217.12677 * 4 3 2 29 29 H 1.09005 * 110.36937 * 358.56712 * 6 5 4 30 30 H 1.08994 * 110.36970 * 120.78930 * 6 5 4 31 31 H 1.09002 * 110.71445 * 140.25026 * 7 6 5 32 32 H 1.08997 * 110.72065 * 263.51635 * 7 6 5 33 33 H 1.08997 * 110.64654 * 81.50823 * 8 7 6 34 34 H 1.09004 * 110.63909 * 204.41608 * 8 7 6 35 35 H 1.09000 * 109.47294 * 297.96176 * 10 9 5 36 36 H 1.09005 * 109.46989 * 57.96087 * 10 9 5 37 37 H 1.09004 * 109.46597 * 300.00317 * 11 10 9 38 38 H 1.08995 * 109.47243 * 59.99560 * 11 10 9 39 39 H 0.96999 * 120.00178 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2940 1.2121 0.0000 4 6 3.7050 0.7504 -0.4329 5 6 3.6847 -0.7322 -0.0212 6 6 4.3271 -0.9170 1.3578 7 6 5.5161 -1.8780 1.1149 8 6 5.7961 -1.7079 -0.4001 9 7 4.4377 -1.5493 -0.9848 10 6 4.5026 -0.8907 -2.2962 11 6 5.3347 -1.7445 -3.2551 12 6 5.4019 -1.0685 -4.6003 13 1 4.9007 -0.1245 -4.7559 14 6 6.1021 -1.6557 -5.6327 15 7 6.1602 -1.0659 -6.8068 16 14 6.9682 -3.2887 -5.3639 17 1 6.0403 -4.4009 -5.6912 18 1 8.1630 -3.3659 -6.2425 19 1 7.3900 -3.3975 -3.9442 20 6 2.2287 -1.1117 0.0005 21 8 1.8047 -2.2479 0.0162 22 1 -0.3633 1.0276 -0.0005 23 1 -0.3633 -0.5141 -0.8898 24 1 -0.3633 -0.5135 0.8902 25 1 2.3291 1.6449 0.9998 26 1 1.9002 1.9384 -0.7112 27 1 3.8371 0.8550 -1.5098 28 1 4.4779 1.2957 0.1088 29 1 4.6840 0.0390 1.7413 30 1 3.6139 -1.3610 2.0522 31 1 6.3824 -1.5760 1.7034 32 1 5.2336 -2.9060 1.3419 33 1 6.3990 -0.8183 -0.5820 34 1 6.2890 -2.5934 -0.8016 35 1 3.4948 -0.7743 -2.6947 36 1 4.9659 0.0901 -2.1877 37 1 6.3426 -1.8608 -2.8566 38 1 4.8716 -2.7251 -3.3636 39 1 6.6532 -1.4788 -7.5331 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274040597.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:05:40 Heat of formation + Delta-G solvation = -11.460033 kcal Electronic energy + Delta-G solvation = -19621.533347 eV Core-core repulsion = 16757.589004 eV Total energy + Delta-G solvation = -2863.944343 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.09335 -37.89242 -36.05776 -33.81314 -32.07285 -31.86476 -29.05167 -27.88264 -26.81920 -24.51184 -23.63721 -21.77435 -21.07096 -19.43080 -18.82265 -17.02276 -16.39434 -15.99945 -15.65685 -15.28041 -14.64021 -14.28498 -13.98087 -13.77364 -13.24419 -13.17429 -12.86680 -12.64770 -12.49675 -12.42462 -12.02190 -11.82885 -11.79598 -11.21549 -11.04868 -10.92683 -10.86535 -10.48679 -10.03063 -9.82453 -9.75529 -9.51746 -9.19404 -8.65672 -8.52707 -7.92207 -6.04506 -4.02833 2.73414 3.04572 3.34431 3.41067 3.45651 4.11690 4.40174 4.47046 4.58465 4.80276 4.84892 4.97085 5.03536 5.20756 5.25708 5.30500 5.39582 5.43180 5.59881 5.65632 5.72726 5.74855 5.81636 5.91550 5.97607 6.09317 6.17373 6.26470 6.34716 6.56216 6.70786 7.06824 7.16353 7.20994 7.42807 7.57208 7.82724 8.39451 8.51723 8.98432 9.58134 11.08702 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.025172 B = 0.006393 C = 0.005787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.074806 B = 4378.514533 C = 4836.902816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.633 5.633 3 C 0.110 3.890 4 C -0.176 4.176 5 C 0.065 3.935 6 C -0.106 4.106 7 C -0.123 4.123 8 C 0.040 3.960 9 N -0.495 5.495 10 C 0.058 3.942 11 C -0.008 4.008 12 C -0.521 4.521 13 H 0.070 0.930 14 C 0.068 3.932 15 N -0.904 5.904 16 Si 0.881 3.119 17 H -0.276 1.276 18 H -0.289 1.289 19 H -0.265 1.265 20 C 0.538 3.462 21 O -0.509 6.509 22 H 0.074 0.926 23 H 0.061 0.939 24 H 0.058 0.942 25 H 0.067 0.933 26 H 0.077 0.923 27 H 0.111 0.889 28 H 0.089 0.911 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.049 0.951 34 H 0.086 0.914 35 H 0.066 0.934 36 H 0.042 0.958 37 H 0.017 0.983 38 H 0.021 0.979 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.343 5.498 17.836 19.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.370 5.370 3 C -0.014 4.014 4 C -0.215 4.215 5 C -0.029 4.029 6 C -0.144 4.144 7 C -0.161 4.161 8 C -0.088 4.088 9 N -0.218 5.218 10 C -0.069 4.069 11 C -0.046 4.046 12 C -0.559 4.559 13 H 0.088 0.912 14 C -0.133 4.133 15 N -0.543 5.543 16 Si 0.708 3.292 17 H -0.202 1.202 18 H -0.215 1.215 19 H -0.189 1.189 20 C 0.325 3.675 21 O -0.382 6.382 22 H 0.093 0.907 23 H 0.079 0.921 24 H 0.076 0.924 25 H 0.085 0.915 26 H 0.095 0.905 27 H 0.129 0.871 28 H 0.108 0.892 29 H 0.094 0.906 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.094 0.906 33 H 0.067 0.933 34 H 0.105 0.895 35 H 0.084 0.916 36 H 0.060 0.940 37 H 0.036 0.964 38 H 0.039 0.961 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.853 4.341 17.563 19.015 hybrid contribution 0.694 0.125 -0.046 0.706 sum -5.159 4.466 17.517 18.799 Atomic orbital electron populations 1.21464 0.78280 1.02200 1.02055 1.48266 1.06170 1.07492 1.75089 1.22045 0.90764 0.87325 1.01243 1.23607 0.96562 0.95838 1.05488 1.21866 0.93421 0.92309 0.95349 1.22253 0.97756 1.00354 0.94088 1.22562 0.97061 1.00112 0.96347 1.23244 0.90679 1.01717 0.93117 1.64557 1.11488 1.43931 1.01849 1.22480 1.00961 0.96260 0.87189 1.19579 0.94638 0.96020 0.94336 1.21042 1.33001 1.08153 0.93737 0.91150 1.24977 0.95943 0.97436 0.94927 1.69914 1.42623 1.39410 1.02307 0.86756 0.79386 0.84518 0.78523 1.20199 1.21473 1.18947 1.20404 0.88191 0.84148 0.74800 1.90668 1.78409 1.20838 1.48290 0.90727 0.92067 0.92363 0.91506 0.90474 0.87116 0.89205 0.90595 0.91130 0.90943 0.90614 0.93284 0.89533 0.91600 0.94030 0.96435 0.96073 0.92724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.08 10.95 59.85 0.66 1.74 16 2 N -0.63 -8.43 3.35 -180.32 -0.60 -9.04 16 3 C 0.11 1.14 7.31 -2.98 -0.02 1.11 16 4 C -0.18 -2.18 5.62 -25.41 -0.14 -2.32 16 5 C 0.06 0.98 0.74 -132.18 -0.10 0.88 16 6 C -0.11 -1.31 6.23 -25.65 -0.16 -1.47 16 7 C -0.12 -1.55 7.07 -24.73 -0.17 -1.72 16 8 C 0.04 0.63 5.44 -1.75 -0.01 0.62 16 9 N -0.49 -9.08 5.02 -216.77 -1.09 -10.17 16 10 C 0.06 1.18 3.52 -3.83 -0.01 1.17 16 11 C -0.01 -0.20 3.92 -27.89 -0.11 -0.31 16 12 C -0.52 -14.92 9.66 -34.44 -0.33 -15.25 16 13 H 0.07 2.14 7.99 -52.48 -0.42 1.72 16 14 C 0.07 2.01 5.47 -17.82 -0.10 1.92 16 15 N -0.90 -27.98 13.96 55.43 0.77 -27.21 16 16 Si 0.88 22.19 27.47 -169.99 -4.67 17.53 16 17 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 18 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 19 H -0.26 -6.40 6.54 56.52 0.37 -6.03 16 20 C 0.54 9.18 6.83 -11.05 -0.08 9.11 16 21 O -0.51 -10.70 17.76 5.55 0.10 -10.61 16 22 H 0.07 0.56 8.07 -51.93 -0.42 0.14 16 23 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 24 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.11 1.59 4.76 -51.93 -0.25 1.34 16 28 H 0.09 0.90 7.42 -51.93 -0.39 0.52 16 29 H 0.08 0.74 7.30 -51.93 -0.38 0.36 16 30 H 0.07 0.89 7.74 -51.93 -0.40 0.48 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 33 H 0.05 0.74 7.98 -51.93 -0.41 0.33 16 34 H 0.09 1.45 7.71 -51.93 -0.40 1.05 16 35 H 0.07 1.43 8.01 -51.93 -0.42 1.01 16 36 H 0.04 0.80 5.99 -51.93 -0.31 0.49 16 37 H 0.02 0.42 6.03 -51.93 -0.31 0.11 16 38 H 0.02 0.54 7.57 -51.93 -0.39 0.15 16 39 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 304.82 15.07 4.59 4.59 Total: -1.00 -34.36 304.82 -7.68 -42.04 By element: Atomic # 1 Polarization: 3.60 SS G_CDS: -6.20 Total: -2.61 kcal Atomic # 6 Polarization: -3.94 SS G_CDS: -0.58 Total: -4.53 kcal Atomic # 7 Polarization: -45.50 SS G_CDS: -0.92 Total: -46.42 kcal Atomic # 8 Polarization: -10.70 SS G_CDS: 0.10 Total: -10.61 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -4.67 Total: 17.53 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -34.36 -7.68 -42.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274040597.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.577 kcal (2) G-P(sol) polarization free energy of solvation -34.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds