Wall clock time and date at job start Sun Mar 29 2020 23:05:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46905 * 124.37603 * 2 1 4 4 C 1.54757 * 105.53690 * 196.74350 * 3 2 1 5 5 C 1.53377 * 101.43694 * 335.68821 * 4 3 2 6 6 C 1.53885 * 111.12604 * 145.08213 * 5 4 3 7 7 C 1.55143 * 101.52291 * 86.20396 * 6 5 4 8 8 N 1.47954 * 104.94022 * 35.80080 * 7 6 5 9 9 C 1.46899 * 111.00015 * 213.89104 * 8 7 6 10 10 C 1.52997 * 109.47254 * 290.78755 * 9 8 7 11 11 C 1.50697 * 109.47466 * 179.97438 * 10 9 8 12 12 H 1.08001 * 119.99890 * 0.02562 * 11 10 9 13 13 C 1.37876 * 120.00428 * 179.97438 * 11 10 9 14 14 N 1.31519 * 119.99563 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00432 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.46756 * 59.99920 * 15 13 11 17 17 H 1.48490 * 109.47381 * 179.97438 * 15 13 11 18 18 H 1.48496 * 109.47117 * 300.00527 * 15 13 11 19 19 C 1.47760 * 108.52578 * 336.13037 * 8 7 6 20 20 C 1.34824 * 124.37526 * 179.97438 * 2 1 3 21 21 O 1.21284 * 125.19082 * 358.91986 * 20 2 1 22 22 H 1.09002 * 109.47141 * 180.02562 * 1 2 3 23 23 H 1.09007 * 109.47262 * 300.01306 * 1 2 3 24 24 H 1.08998 * 109.47623 * 60.02057 * 1 2 3 25 25 H 1.09008 * 110.23321 * 315.75854 * 3 2 1 26 26 H 1.09002 * 110.23393 * 77.72194 * 3 2 1 27 27 H 1.08998 * 111.03306 * 217.64754 * 4 3 2 28 28 H 1.09002 * 111.03120 * 93.72550 * 4 3 2 29 29 H 1.09005 * 111.01693 * 204.26117 * 6 5 4 30 30 H 1.09003 * 111.01560 * 328.10653 * 6 5 4 31 31 H 1.09002 * 110.34325 * 276.93448 * 7 6 5 32 32 H 1.08999 * 110.34079 * 154.66917 * 7 6 5 33 33 H 1.09002 * 109.47043 * 50.78826 * 9 8 7 34 34 H 1.09001 * 109.47354 * 170.78887 * 9 8 7 35 35 H 1.09002 * 109.47153 * 300.00004 * 10 9 8 36 36 H 1.08998 * 109.47533 * 59.99633 * 10 9 8 37 37 H 0.97002 * 119.99731 * 180.02562 * 14 13 11 38 38 H 1.08998 * 109.97930 * 121.22641 * 19 8 7 39 39 H 1.09000 * 109.97898 * 242.51475 * 19 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2945 1.2125 0.0000 4 6 3.7069 0.7484 -0.4295 5 6 3.6765 -0.7313 -0.0270 6 6 4.4758 -1.5929 -1.0204 7 6 5.9107 -1.4833 -0.4409 8 7 5.7280 -1.4522 1.0270 9 6 6.7410 -0.6015 1.6657 10 6 8.1128 -1.2697 1.5531 11 6 9.1521 -0.3967 2.2078 12 1 8.8631 0.5408 2.6595 13 6 10.4718 -0.7952 2.2312 14 7 10.8236 -1.9371 1.6816 15 14 11.7603 0.2872 3.0421 16 1 11.4173 0.4765 4.4745 17 1 13.0914 -0.3619 2.9340 18 1 11.7961 1.6074 2.3631 19 6 4.3648 -0.9634 1.3202 20 6 2.2262 -1.1128 0.0005 21 8 1.8029 -2.2492 0.0197 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5141 0.8899 24 1 -0.3634 0.5135 -0.8901 25 1 1.9025 1.9374 -0.7136 26 1 2.3278 1.6464 0.9994 27 1 4.4794 1.2873 0.1191 28 1 3.8446 0.8584 -1.5052 29 1 4.1279 -2.6259 -1.0099 30 1 4.4270 -1.1763 -2.0265 31 1 6.3884 -0.5651 -0.7829 32 1 6.5037 -2.3507 -0.7308 33 1 6.7672 0.3681 1.1684 34 1 6.4892 -0.4637 2.7173 35 1 8.0865 -2.2393 2.0505 36 1 8.3646 -1.4075 0.5016 37 1 11.7520 -2.2177 1.6984 38 1 3.8168 -1.7102 1.8945 39 1 4.4164 -0.0283 1.8779 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274040715.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:05:44 Heat of formation + Delta-G solvation = -30.078277 kcal Electronic energy + Delta-G solvation = -19025.469803 eV Core-core repulsion = 16160.718112 eV Total energy + Delta-G solvation = -2864.751691 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.16198 -38.01858 -36.38412 -33.92157 -32.50915 -30.60261 -28.94208 -28.01481 -26.91980 -24.75448 -23.36007 -21.69719 -21.04617 -19.84433 -19.06005 -16.65972 -16.43272 -16.31922 -15.67332 -15.09136 -14.49037 -14.40745 -14.15666 -13.86580 -13.45465 -13.16845 -12.86746 -12.70435 -12.43748 -12.24309 -12.01843 -11.89079 -11.71340 -11.13653 -11.03728 -10.96536 -10.82633 -10.57171 -10.53684 -9.84201 -9.78754 -9.33886 -9.12318 -8.90567 -8.32575 -7.72449 -5.97898 -4.00754 2.47932 2.83725 3.33685 3.38509 3.40310 4.14347 4.23834 4.38913 4.46369 4.61347 4.82326 4.97829 5.02243 5.10060 5.23514 5.25908 5.37790 5.46008 5.49731 5.57569 5.67927 5.72795 5.77629 5.96391 6.09360 6.17511 6.23676 6.40210 6.42670 6.46886 6.89775 6.96821 7.46717 7.50737 7.77179 7.90991 8.08652 8.10458 8.44376 9.06548 9.62766 11.13408 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.045810 B = 0.004301 C = 0.004131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.075704 B = 6508.854731 C = 6777.142286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.630 5.630 3 C 0.105 3.895 4 C -0.123 4.123 5 C -0.118 4.118 6 C -0.108 4.108 7 C 0.051 3.949 8 N -0.525 5.525 9 C 0.058 3.942 10 C 0.029 3.971 11 C -0.523 4.523 12 H 0.053 0.947 13 C 0.059 3.941 14 N -0.892 5.892 15 Si 0.892 3.108 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.278 1.278 19 C 0.070 3.930 20 C 0.537 3.463 21 O -0.522 6.522 22 H 0.081 0.919 23 H 0.059 0.941 24 H 0.059 0.941 25 H 0.078 0.922 26 H 0.072 0.928 27 H 0.093 0.907 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.074 0.926 31 H 0.049 0.951 32 H 0.084 0.916 33 H 0.022 0.978 34 H 0.060 0.940 35 H 0.025 0.975 36 H 0.016 0.984 37 H 0.261 0.739 38 H 0.075 0.925 39 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.237 7.482 -5.637 20.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.366 5.366 3 C -0.018 4.018 4 C -0.160 4.160 5 C -0.122 4.122 6 C -0.146 4.146 7 C -0.077 4.077 8 N -0.249 5.249 9 C -0.069 4.069 10 C -0.009 4.009 11 C -0.562 4.562 12 H 0.071 0.929 13 C -0.143 4.143 14 N -0.531 5.531 15 Si 0.720 3.280 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.203 1.203 19 C -0.059 4.059 20 C 0.324 3.676 21 O -0.398 6.398 22 H 0.100 0.900 23 H 0.078 0.922 24 H 0.077 0.923 25 H 0.096 0.904 26 H 0.090 0.910 27 H 0.112 0.888 28 H 0.103 0.897 29 H 0.103 0.897 30 H 0.092 0.908 31 H 0.068 0.932 32 H 0.102 0.898 33 H 0.040 0.960 34 H 0.078 0.922 35 H 0.043 0.957 36 H 0.035 0.965 37 H 0.071 0.929 38 H 0.094 0.906 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -18.333 6.265 -5.440 20.123 hybrid contribution 0.618 1.559 0.167 1.685 sum -17.715 7.825 -5.273 20.071 Atomic orbital electron populations 1.21529 0.78316 1.03653 1.01268 1.48329 1.06336 1.07515 1.74401 1.22140 0.90668 0.87111 1.01900 1.22643 0.96393 0.94232 1.02774 1.21768 0.93564 0.96791 1.00075 1.22611 0.94916 1.00368 0.96712 1.23057 0.95099 1.01837 0.87658 1.63824 1.00981 1.51247 1.08859 1.22569 0.93761 0.93262 0.97269 1.19051 0.88074 0.96344 0.97394 1.21151 0.92552 1.05570 1.36961 0.92902 1.24990 0.98588 0.95129 0.95552 1.69967 1.17599 1.20955 1.44619 0.86666 0.80773 0.80592 0.79995 1.20248 1.21278 1.20325 1.22555 0.90682 0.99561 0.93058 1.20370 0.88449 0.84250 0.74526 1.90701 1.78566 1.20720 1.49771 0.90004 0.92194 0.92253 0.90400 0.90990 0.88824 0.89652 0.89687 0.90754 0.93245 0.89752 0.96018 0.92162 0.95689 0.96523 0.92936 0.90645 0.92349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.78 11.15 59.85 0.67 1.45 16 2 N -0.63 -6.85 3.35 -180.42 -0.60 -7.45 16 3 C 0.10 0.88 7.37 -2.90 -0.02 0.85 16 4 C -0.12 -1.22 6.10 -25.61 -0.16 -1.38 16 5 C -0.12 -1.56 0.67 -155.32 -0.10 -1.66 16 6 C -0.11 -1.50 6.04 -25.14 -0.15 -1.65 16 7 C 0.05 0.85 5.71 -2.11 -0.01 0.84 16 8 N -0.52 -9.71 5.18 -231.55 -1.20 -10.91 16 9 C 0.06 1.22 4.51 -3.83 -0.02 1.20 16 10 C 0.03 0.75 5.02 -27.89 -0.14 0.61 16 11 C -0.52 -14.77 9.11 -34.44 -0.31 -15.08 16 12 H 0.05 1.43 7.74 -52.49 -0.41 1.03 16 13 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 14 N -0.89 -26.93 13.29 55.43 0.74 -26.20 16 15 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 16 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 17 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 18 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 19 C 0.07 1.08 6.02 -3.32 -0.02 1.06 16 20 C 0.54 7.64 6.78 -11.31 -0.08 7.56 16 21 O -0.52 -9.30 16.98 5.55 0.09 -9.21 16 22 H 0.08 0.78 7.56 -51.93 -0.39 0.39 16 23 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 24 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.08 0.49 8.14 -51.92 -0.42 0.06 16 26 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.09 0.94 7.68 -51.93 -0.40 0.54 16 28 H 0.08 0.76 7.64 -51.93 -0.40 0.36 16 29 H 0.08 1.30 7.77 -51.93 -0.40 0.90 16 30 H 0.07 0.87 7.67 -51.93 -0.40 0.47 16 31 H 0.05 0.81 7.62 -51.93 -0.40 0.42 16 32 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 33 H 0.02 0.43 7.85 -51.93 -0.41 0.03 16 34 H 0.06 1.25 8.04 -51.93 -0.42 0.83 16 35 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.02 0.45 7.49 -51.93 -0.39 0.06 16 37 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 38 H 0.08 1.25 7.88 -51.93 -0.41 0.84 16 39 H 0.06 0.83 7.06 -51.93 -0.37 0.46 16 LS Contribution 312.76 15.07 4.71 4.71 Total: -1.00 -32.86 312.76 -8.18 -41.03 By element: Atomic # 1 Polarization: 2.53 SS G_CDS: -6.45 Total: -3.92 kcal Atomic # 6 Polarization: -4.16 SS G_CDS: -0.44 Total: -4.60 kcal Atomic # 7 Polarization: -43.49 SS G_CDS: -1.07 Total: -44.55 kcal Atomic # 8 Polarization: -9.30 SS G_CDS: 0.09 Total: -9.21 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -32.86 -8.18 -41.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274040715.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.956 kcal (2) G-P(sol) polarization free energy of solvation -32.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds