Wall clock time and date at job start Sun Mar 29 2020 23:05:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46908 * 124.37325 * 2 1 4 4 C 1.54767 * 105.53001 * 196.77455 * 3 2 1 5 5 C 1.53371 * 101.43999 * 335.68978 * 4 3 2 6 6 C 1.53875 * 111.14165 * 262.15046 * 5 4 3 7 7 C 1.55129 * 101.53039 * 205.20800 * 6 5 4 8 8 N 1.47952 * 104.94509 * 35.79597 * 7 6 5 9 9 C 1.46896 * 111.00599 * 213.89687 * 8 7 6 10 10 C 1.53002 * 109.46899 * 290.78575 * 9 8 7 11 11 C 1.50703 * 109.47207 * 179.97438 * 10 9 8 12 12 H 1.07994 * 119.99603 * 359.97438 * 11 10 9 13 13 C 1.37875 * 119.99838 * 180.02562 * 11 10 9 14 14 N 1.31513 * 120.00380 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 119.99848 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.47297 * 359.97438 * 15 13 11 17 17 H 1.48503 * 109.47261 * 239.99776 * 15 13 11 18 18 H 1.48500 * 109.47454 * 119.99769 * 15 13 11 19 19 C 1.47762 * 108.52075 * 336.13291 * 8 7 6 20 20 C 1.34826 * 124.37285 * 179.97438 * 2 1 3 21 21 O 1.21283 * 125.18984 * 358.87449 * 20 2 1 22 22 H 1.09004 * 109.47353 * 180.02562 * 1 2 3 23 23 H 1.09006 * 109.47736 * 300.02728 * 1 2 3 24 24 H 1.09006 * 109.47474 * 60.02498 * 1 2 3 25 25 H 1.08998 * 110.23358 * 315.79046 * 3 2 1 26 26 H 1.09002 * 110.23318 * 77.67608 * 3 2 1 27 27 H 1.09000 * 111.02714 * 217.65244 * 4 3 2 28 28 H 1.09002 * 111.02604 * 93.73258 * 4 3 2 29 29 H 1.09012 * 111.01218 * 323.26883 * 6 5 4 30 30 H 1.09000 * 111.01426 * 87.10356 * 6 5 4 31 31 H 1.09004 * 110.34321 * 276.92836 * 7 6 5 32 32 H 1.09002 * 110.35000 * 154.66935 * 7 6 5 33 33 H 1.08993 * 109.47625 * 170.78418 * 9 8 7 34 34 H 1.09006 * 109.47099 * 50.77898 * 9 8 7 35 35 H 1.09005 * 109.47493 * 59.99662 * 10 9 8 36 36 H 1.08998 * 109.47006 * 299.99626 * 10 9 8 37 37 H 0.97001 * 119.99667 * 0.02562 * 14 13 11 38 38 H 1.09004 * 109.98128 * 121.22566 * 19 8 7 39 39 H 1.09001 * 109.98038 * 242.47032 * 19 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2944 1.2125 0.0000 4 6 3.7068 0.7485 -0.4304 5 6 3.6764 -0.7313 -0.0283 6 6 4.3519 -0.9494 1.3370 7 6 4.7938 -2.4326 1.2309 8 7 5.1826 -2.6146 -0.1850 9 6 4.8590 -3.9700 -0.6499 10 6 5.7787 -4.9790 0.0407 11 6 5.4465 -6.3696 -0.4358 12 1 4.6579 -6.5187 -1.1584 13 6 6.1485 -7.4515 0.0518 14 7 7.1084 -7.2699 0.9322 15 14 5.7371 -9.1751 -0.5392 16 1 4.6265 -9.1092 -1.5229 17 1 5.3243 -10.0097 0.6176 18 1 6.9331 -9.7767 -1.1819 19 6 4.4861 -1.5958 -0.9977 20 6 2.2262 -1.1128 0.0005 21 8 1.8029 -2.2492 0.0205 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3635 0.5143 0.8898 24 1 -0.3634 0.5135 -0.8902 25 1 1.9022 1.9376 -0.7131 26 1 2.3271 1.6469 0.9992 27 1 4.4795 1.2871 0.1182 28 1 3.8438 0.8589 -1.5061 29 1 5.2136 -0.2924 1.4562 30 1 3.6411 -0.8099 2.1515 31 1 3.9652 -3.0939 1.4844 32 1 5.6448 -2.6223 1.8850 33 1 5.0015 -4.0277 -1.7289 34 1 3.8213 -4.1992 -0.4076 35 1 5.6363 -4.9213 1.1198 36 1 6.8165 -4.7499 -0.2016 37 1 7.3223 -6.3748 1.2389 38 1 5.2136 -0.9803 -1.5268 39 1 3.8196 -2.0804 -1.7112 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274040716.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:05:47 Heat of formation + Delta-G solvation = -32.957012 kcal Electronic energy + Delta-G solvation = -19237.077159 eV Core-core repulsion = 16372.200637 eV Total energy + Delta-G solvation = -2864.876522 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.20578 -37.81109 -36.50319 -34.08106 -32.65561 -30.50513 -28.87128 -27.75562 -27.07366 -24.23530 -23.14635 -21.82260 -21.37363 -20.00189 -19.02602 -16.64800 -16.62269 -16.31123 -15.79915 -14.99842 -14.69695 -13.99537 -13.89390 -13.67189 -13.65160 -13.16447 -12.89678 -12.72091 -12.49645 -12.29227 -12.19624 -12.05049 -11.52519 -11.32766 -11.12595 -10.87505 -10.71178 -10.65226 -10.05309 -9.88144 -9.68303 -9.54423 -8.90436 -8.45174 -8.20451 -7.74414 -6.25483 -3.92709 2.49706 2.82783 3.50830 3.55489 3.69282 4.10586 4.18392 4.40652 4.47697 4.65902 4.84342 4.88587 5.00437 5.06525 5.19441 5.23425 5.43248 5.48363 5.52636 5.54045 5.57732 5.66203 5.77520 5.91025 6.02398 6.18611 6.29528 6.34499 6.39439 6.59650 6.89846 6.97752 7.38877 7.44049 7.72359 7.82603 8.11310 8.37978 8.59819 9.01183 9.79274 11.16021 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.037589 B = 0.004784 C = 0.004484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.721475 B = 5851.547070 C = 6242.558906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.632 5.632 3 C 0.105 3.895 4 C -0.118 4.118 5 C -0.119 4.119 6 C -0.103 4.103 7 C 0.047 3.953 8 N -0.525 5.525 9 C 0.064 3.936 10 C 0.017 3.983 11 C -0.600 4.600 12 H 0.047 0.953 13 C 0.015 3.985 14 N -0.916 5.916 15 Si 1.074 2.926 16 H -0.290 1.290 17 H -0.288 1.288 18 H -0.287 1.287 19 C 0.067 3.933 20 C 0.529 3.471 21 O -0.512 6.512 22 H 0.082 0.918 23 H 0.059 0.941 24 H 0.059 0.941 25 H 0.077 0.923 26 H 0.070 0.930 27 H 0.095 0.905 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.069 0.931 31 H 0.052 0.948 32 H 0.081 0.919 33 H 0.058 0.942 34 H 0.032 0.968 35 H 0.006 0.994 36 H 0.014 0.986 37 H 0.270 0.730 38 H 0.081 0.919 39 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.916 21.427 -1.322 23.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.368 5.368 3 C -0.018 4.018 4 C -0.156 4.156 5 C -0.123 4.123 6 C -0.142 4.142 7 C -0.081 4.081 8 N -0.249 5.249 9 C -0.063 4.063 10 C -0.020 4.020 11 C -0.639 4.639 12 H 0.066 0.934 13 C -0.189 4.189 14 N -0.553 5.553 15 Si 0.903 3.097 16 H -0.216 1.216 17 H -0.214 1.214 18 H -0.214 1.214 19 C -0.062 4.062 20 C 0.316 3.684 21 O -0.386 6.386 22 H 0.100 0.900 23 H 0.077 0.923 24 H 0.078 0.922 25 H 0.095 0.905 26 H 0.088 0.912 27 H 0.113 0.887 28 H 0.104 0.896 29 H 0.105 0.895 30 H 0.088 0.912 31 H 0.070 0.930 32 H 0.099 0.901 33 H 0.077 0.923 34 H 0.050 0.950 35 H 0.024 0.976 36 H 0.032 0.968 37 H 0.080 0.920 38 H 0.100 0.900 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -9.298 19.253 -1.216 21.416 hybrid contribution -1.487 1.643 -0.111 2.219 sum -10.785 20.896 -1.327 23.553 Atomic orbital electron populations 1.21530 0.78292 1.03766 1.01171 1.48313 1.06320 1.07368 1.74764 1.22126 0.90805 0.87207 1.01701 1.22550 0.96368 0.93900 1.02786 1.21793 0.93689 0.97019 0.99793 1.22544 0.99538 0.98494 0.93581 1.23069 0.99896 0.94010 0.91116 1.63888 1.54922 1.04499 1.01603 1.22393 0.98578 0.86149 0.99159 1.19177 0.94693 0.93077 0.95090 1.22093 1.21316 0.92369 1.28091 0.93421 1.25808 0.93922 1.04222 0.94915 1.70702 1.29277 1.25800 1.29519 0.83483 0.75633 0.74775 0.75815 1.21596 1.21423 1.21365 1.22598 0.95009 0.93549 0.95024 1.20442 0.88547 0.84407 0.75013 1.90771 1.78436 1.20581 1.48772 0.89964 0.92269 0.92232 0.90497 0.91164 0.88676 0.89638 0.89509 0.91197 0.92955 0.90114 0.92333 0.94961 0.97583 0.96770 0.91996 0.90038 0.92673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.85 11.15 59.85 0.67 1.52 16 2 N -0.63 -7.07 3.35 -180.41 -0.60 -7.68 16 3 C 0.10 0.79 7.37 -2.89 -0.02 0.77 16 4 C -0.12 -0.98 6.15 -25.61 -0.16 -1.14 16 5 C -0.12 -1.55 0.66 -155.33 -0.10 -1.65 16 6 C -0.10 -1.36 6.02 -25.15 -0.15 -1.51 16 7 C 0.05 0.85 5.73 -2.12 -0.01 0.83 16 8 N -0.53 -10.29 5.18 -231.55 -1.20 -11.49 16 9 C 0.06 1.52 4.51 -3.82 -0.02 1.51 16 10 C 0.02 0.47 4.33 -27.88 -0.12 0.35 16 11 C -0.60 -18.28 9.11 -34.44 -0.31 -18.60 16 12 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 13 C 0.01 0.45 5.46 -17.82 -0.10 0.35 16 14 N -0.92 -29.34 13.65 55.43 0.76 -28.59 16 15 Si 1.07 26.75 29.90 -169.99 -5.08 21.67 16 16 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 17 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 18 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 19 C 0.07 1.06 5.95 -3.32 -0.02 1.04 16 20 C 0.53 8.05 6.59 -11.31 -0.07 7.98 16 21 O -0.51 -10.25 17.22 5.56 0.10 -10.16 16 22 H 0.08 0.89 7.56 -51.93 -0.39 0.50 16 23 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.09 0.62 7.62 -51.93 -0.40 0.22 16 28 H 0.09 0.64 7.90 -51.93 -0.41 0.23 16 29 H 0.09 0.95 7.76 -51.92 -0.40 0.55 16 30 H 0.07 0.86 8.00 -51.93 -0.42 0.45 16 31 H 0.05 1.08 7.62 -51.93 -0.40 0.69 16 32 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 33 H 0.06 1.38 8.04 -51.93 -0.42 0.96 16 34 H 0.03 0.82 7.85 -51.93 -0.41 0.41 16 35 H 0.01 0.17 7.36 -51.93 -0.38 -0.21 16 36 H 0.01 0.41 8.01 -51.93 -0.42 -0.01 16 37 H 0.27 8.63 7.22 -40.82 -0.29 8.34 16 38 H 0.08 1.11 7.79 -51.93 -0.40 0.71 16 39 H 0.05 0.96 7.24 -51.93 -0.38 0.58 16 LS Contribution 312.07 15.07 4.70 4.70 Total: -1.00 -36.03 312.07 -8.18 -44.21 By element: Atomic # 1 Polarization: 2.31 SS G_CDS: -6.43 Total: -4.12 kcal Atomic # 6 Polarization: -8.13 SS G_CDS: -0.42 Total: -8.55 kcal Atomic # 7 Polarization: -46.71 SS G_CDS: -1.05 Total: -47.75 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: 0.10 Total: -10.16 kcal Atomic # 14 Polarization: 26.75 SS G_CDS: -5.08 Total: 21.67 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -36.03 -8.18 -44.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274040716.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.250 kcal (2) G-P(sol) polarization free energy of solvation -36.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds