Wall clock time and date at job start Sun Mar 29 2020 23:05:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46908 * 124.37325 * 2 1 4 4 C 1.54767 * 105.53001 * 196.77455 * 3 2 1 5 5 C 1.53371 * 101.43999 * 335.68978 * 4 3 2 6 6 C 1.53875 * 111.14165 * 262.15046 * 5 4 3 7 7 C 1.55129 * 101.53039 * 205.20800 * 6 5 4 8 8 N 1.47952 * 104.94509 * 35.79597 * 7 6 5 9 9 C 1.46896 * 111.00599 * 213.89687 * 8 7 6 10 10 C 1.53002 * 109.46899 * 290.78575 * 9 8 7 11 11 C 1.50703 * 109.47207 * 179.97438 * 10 9 8 12 12 H 1.07994 * 119.99603 * 359.97438 * 11 10 9 13 13 C 1.37875 * 119.99838 * 180.02562 * 11 10 9 14 14 N 1.31513 * 120.00380 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 119.99848 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.47297 * 359.97438 * 15 13 11 17 17 H 1.48503 * 109.47261 * 239.99776 * 15 13 11 18 18 H 1.48500 * 109.47454 * 119.99769 * 15 13 11 19 19 C 1.47762 * 108.52075 * 336.13291 * 8 7 6 20 20 C 1.34826 * 124.37285 * 179.97438 * 2 1 3 21 21 O 1.21283 * 125.18984 * 358.87449 * 20 2 1 22 22 H 1.09004 * 109.47353 * 180.02562 * 1 2 3 23 23 H 1.09006 * 109.47736 * 300.02728 * 1 2 3 24 24 H 1.09006 * 109.47474 * 60.02498 * 1 2 3 25 25 H 1.08998 * 110.23358 * 315.79046 * 3 2 1 26 26 H 1.09002 * 110.23318 * 77.67608 * 3 2 1 27 27 H 1.09000 * 111.02714 * 217.65244 * 4 3 2 28 28 H 1.09002 * 111.02604 * 93.73258 * 4 3 2 29 29 H 1.09012 * 111.01218 * 323.26883 * 6 5 4 30 30 H 1.09000 * 111.01426 * 87.10356 * 6 5 4 31 31 H 1.09004 * 110.34321 * 276.92836 * 7 6 5 32 32 H 1.09002 * 110.35000 * 154.66935 * 7 6 5 33 33 H 1.08993 * 109.47625 * 170.78418 * 9 8 7 34 34 H 1.09006 * 109.47099 * 50.77898 * 9 8 7 35 35 H 1.09005 * 109.47493 * 59.99662 * 10 9 8 36 36 H 1.08998 * 109.47006 * 299.99626 * 10 9 8 37 37 H 0.97001 * 119.99667 * 0.02562 * 14 13 11 38 38 H 1.09004 * 109.98128 * 121.22566 * 19 8 7 39 39 H 1.09001 * 109.98038 * 242.47032 * 19 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2944 1.2125 0.0000 4 6 3.7068 0.7485 -0.4304 5 6 3.6764 -0.7313 -0.0283 6 6 4.3519 -0.9494 1.3370 7 6 4.7938 -2.4326 1.2309 8 7 5.1826 -2.6146 -0.1850 9 6 4.8590 -3.9700 -0.6499 10 6 5.7787 -4.9790 0.0407 11 6 5.4465 -6.3696 -0.4358 12 1 4.6579 -6.5187 -1.1584 13 6 6.1485 -7.4515 0.0518 14 7 7.1084 -7.2699 0.9322 15 14 5.7371 -9.1751 -0.5392 16 1 4.6265 -9.1092 -1.5229 17 1 5.3243 -10.0097 0.6176 18 1 6.9331 -9.7767 -1.1819 19 6 4.4861 -1.5958 -0.9977 20 6 2.2262 -1.1128 0.0005 21 8 1.8029 -2.2492 0.0205 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3635 0.5143 0.8898 24 1 -0.3634 0.5135 -0.8902 25 1 1.9022 1.9376 -0.7131 26 1 2.3271 1.6469 0.9992 27 1 4.4795 1.2871 0.1182 28 1 3.8438 0.8589 -1.5061 29 1 5.2136 -0.2924 1.4562 30 1 3.6411 -0.8099 2.1515 31 1 3.9652 -3.0939 1.4844 32 1 5.6448 -2.6223 1.8850 33 1 5.0015 -4.0277 -1.7289 34 1 3.8213 -4.1992 -0.4076 35 1 5.6363 -4.9213 1.1198 36 1 6.8165 -4.7499 -0.2016 37 1 7.3223 -6.3748 1.2389 38 1 5.2136 -0.9803 -1.5268 39 1 3.8196 -2.0804 -1.7112 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274040716.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:05:47 Heat of formation + Delta-G solvation = -59.922217 kcal Electronic energy + Delta-G solvation = -19238.246458 eV Core-core repulsion = 16372.200637 eV Total energy + Delta-G solvation = -2866.045821 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.26543 -39.19025 -37.60755 -36.02782 -34.24567 -31.91000 -30.40880 -29.05429 -27.95115 -26.15831 -24.31056 -23.67580 -22.30441 -21.71166 -20.08658 -18.95267 -17.66195 -17.26469 -16.91630 -16.33922 -16.13720 -15.68031 -15.49033 -14.92664 -14.81388 -14.65181 -14.28336 -13.98747 -13.81323 -13.45578 -13.40605 -13.15004 -12.96783 -12.87189 -12.57101 -12.52893 -12.12270 -11.96595 -11.90455 -11.71166 -11.55804 -10.78347 -10.75233 -10.57747 -9.75459 -9.39061 -8.74938 -6.44163 1.37654 1.48145 1.59134 1.76542 2.00616 2.52224 2.97928 3.11526 3.20735 3.36004 3.44297 3.86395 3.96907 4.18113 4.24385 4.29719 4.35848 4.37199 4.45981 4.54129 4.59815 4.67611 4.76743 4.78952 4.80295 4.84187 4.88145 4.99431 5.10563 5.16036 5.18543 5.36011 5.55418 5.79511 5.99095 6.00784 6.08610 6.13731 6.53191 7.06189 7.37848 8.66575 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.037589 B = 0.004784 C = 0.004484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.721475 B = 5851.547070 C = 6242.558906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.625 5.625 3 C 0.100 3.900 4 C -0.107 4.107 5 C -0.117 4.117 6 C -0.087 4.087 7 C 0.040 3.960 8 N -0.531 5.531 9 C 0.086 3.914 10 C 0.026 3.974 11 C -0.625 4.625 12 H 0.043 0.957 13 C -0.035 4.035 14 N -0.933 5.933 15 Si 1.125 2.875 16 H -0.275 1.275 17 H -0.275 1.275 18 H -0.270 1.270 19 C 0.064 3.936 20 C 0.511 3.489 21 O -0.580 6.580 22 H 0.052 0.948 23 H 0.084 0.916 24 H 0.085 0.915 25 H 0.108 0.892 26 H 0.093 0.907 27 H 0.126 0.874 28 H 0.098 0.902 29 H 0.122 0.878 30 H 0.080 0.920 31 H 0.012 0.988 32 H 0.073 0.927 33 H 0.057 0.943 34 H 0.004 0.996 35 H -0.015 1.015 36 H -0.003 1.003 37 H 0.256 0.744 38 H 0.113 0.887 39 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.171 24.313 -1.869 26.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.359 5.359 3 C -0.021 4.021 4 C -0.144 4.144 5 C -0.121 4.121 6 C -0.125 4.125 7 C -0.088 4.088 8 N -0.254 5.254 9 C -0.042 4.042 10 C -0.011 4.011 11 C -0.663 4.663 12 H 0.061 0.939 13 C -0.233 4.233 14 N -0.570 5.570 15 Si 0.946 3.054 16 H -0.200 1.200 17 H -0.201 1.201 18 H -0.196 1.196 19 C -0.064 4.064 20 C 0.299 3.701 21 O -0.460 6.460 22 H 0.071 0.929 23 H 0.102 0.898 24 H 0.104 0.896 25 H 0.126 0.874 26 H 0.111 0.889 27 H 0.145 0.855 28 H 0.117 0.883 29 H 0.140 0.860 30 H 0.098 0.902 31 H 0.030 0.970 32 H 0.092 0.908 33 H 0.075 0.925 34 H 0.023 0.977 35 H 0.004 0.996 36 H 0.015 0.985 37 H 0.065 0.935 38 H 0.131 0.869 39 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -9.561 22.244 -1.762 24.276 hybrid contribution -1.445 0.834 0.077 1.670 sum -11.007 23.078 -1.684 25.624 Atomic orbital electron populations 1.21707 0.77262 1.02687 1.03662 1.48534 1.07337 1.07605 1.72418 1.22493 0.89619 0.85915 1.04055 1.22653 0.97914 0.89702 1.04161 1.21783 0.91732 0.99909 0.98672 1.22535 1.00957 0.94796 0.94196 1.23086 0.98206 0.97391 0.90108 1.63832 1.55717 1.02944 1.02928 1.21950 0.95726 0.88132 0.98436 1.19018 0.94404 0.93666 0.94053 1.22479 1.21481 0.94015 1.28360 0.93907 1.27510 0.92914 1.08816 0.94037 1.70843 1.30477 1.24956 1.30712 0.82851 0.76534 0.69849 0.76206 1.19966 1.20096 1.19560 1.22748 0.95651 0.93080 0.94966 1.20958 0.90094 0.84356 0.74671 1.90734 1.79660 1.23425 1.52170 0.92906 0.89762 0.89616 0.87360 0.88872 0.85541 0.88349 0.85951 0.90185 0.96962 0.90827 0.92473 0.97726 0.99642 0.98510 0.93488 0.86863 0.94985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.43 11.15 127.77 1.42 2.85 16 2 N -0.63 -12.56 3.35 -843.07 -2.82 -15.38 16 3 C 0.10 1.00 7.37 86.90 0.64 1.64 16 4 C -0.11 -1.24 6.15 31.32 0.19 -1.05 16 5 C -0.12 -2.82 0.66 -52.71 -0.03 -2.86 16 6 C -0.09 -2.12 6.02 31.62 0.19 -1.93 16 7 C 0.04 1.50 5.73 86.83 0.50 2.00 16 8 N -0.53 -21.42 5.18 -886.50 -4.59 -26.01 16 9 C 0.09 4.32 4.51 86.30 0.39 4.71 16 10 C 0.03 1.53 4.33 29.85 0.13 1.66 16 11 C -0.63 -39.62 9.11 25.60 0.23 -39.38 16 12 H 0.04 2.69 7.74 -2.91 -0.02 2.67 16 13 C -0.04 -2.20 5.46 84.65 0.46 -1.74 16 14 N -0.93 -61.20 13.65 21.45 0.29 -60.90 16 15 Si 1.13 53.96 29.90 68.60 2.05 56.01 16 16 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 17 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 18 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 19 C 0.06 1.97 5.95 86.16 0.51 2.48 16 20 C 0.51 15.50 6.59 87.43 0.58 16.08 16 21 O -0.58 -24.82 17.22 -3.04 -0.05 -24.87 16 22 H 0.05 1.18 7.56 -2.38 -0.02 1.16 16 23 H 0.08 0.96 8.14 -2.38 -0.02 0.94 16 24 H 0.09 0.96 8.14 -2.38 -0.02 0.94 16 25 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 26 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.13 0.78 7.62 -2.39 -0.02 0.76 16 28 H 0.10 0.96 7.90 -2.39 -0.02 0.95 16 29 H 0.12 2.16 7.76 -2.38 -0.02 2.14 16 30 H 0.08 1.82 8.00 -2.39 -0.02 1.80 16 31 H 0.01 0.54 7.62 -2.39 -0.02 0.52 16 32 H 0.07 2.79 8.14 -2.39 -0.02 2.77 16 33 H 0.06 2.83 8.04 -2.39 -0.02 2.81 16 34 H 0.00 0.25 7.85 -2.38 -0.02 0.23 16 35 H -0.01 -0.91 7.36 -2.38 -0.02 -0.93 16 36 H 0.00 -0.21 8.01 -2.39 -0.02 -0.23 16 37 H 0.26 17.07 7.22 -92.71 -0.67 16.40 16 38 H 0.11 2.79 7.79 -2.39 -0.02 2.77 16 39 H 0.03 1.14 7.24 -2.39 -0.02 1.12 16 Total: -1.00 -85.07 312.07 1.20 -83.87 By element: Atomic # 1 Polarization: 1.69 SS G_CDS: 1.11 Total: 2.80 kcal Atomic # 6 Polarization: -20.73 SS G_CDS: 5.21 Total: -15.52 kcal Atomic # 7 Polarization: -95.17 SS G_CDS: -7.12 Total: -102.29 kcal Atomic # 8 Polarization: -24.82 SS G_CDS: -0.05 Total: -24.87 kcal Atomic # 14 Polarization: 53.96 SS G_CDS: 2.05 Total: 56.01 kcal Total: -85.07 1.20 -83.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274040716.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.947 kcal (2) G-P(sol) polarization free energy of solvation -85.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds