Wall clock time and date at job start Sun Mar 29 2020 23:20:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50693 * 120.00245 * 2 1 4 4 C 1.52998 * 109.47565 * 124.99583 * 3 2 1 5 5 C 1.50693 * 109.47565 * 179.97438 * 4 3 2 6 6 O 1.21286 * 120.00029 * 359.97438 * 5 4 3 7 7 N 1.34775 * 120.00550 * 179.97438 * 5 4 3 8 8 C 1.46504 * 119.99795 * 0.02562 * 7 5 4 9 9 C 1.46497 * 120.00541 * 179.97438 * 7 5 4 10 10 C 1.53784 * 113.61569 * 240.00166 * 9 7 5 11 11 C 1.53787 * 87.07923 * 220.01663 * 10 9 7 12 12 N 1.46501 * 113.61128 * 139.98386 * 11 10 9 13 13 C 1.36937 * 119.99940 * 155.00138 * 12 11 10 14 14 H 1.07995 * 119.99838 * 359.97438 * 13 12 11 15 15 C 1.38813 * 119.99758 * 179.97438 * 13 12 11 16 16 N 1.31617 * 119.99932 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99944 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.46803 * 359.97438 * 17 15 13 19 19 H 1.48503 * 109.47215 * 119.99627 * 17 15 13 20 20 H 1.48496 * 109.46748 * 239.99992 * 17 15 13 21 21 C 1.53779 * 113.61581 * 142.50385 * 9 7 5 22 22 H 1.07993 * 120.00378 * 180.02562 * 1 2 3 23 23 H 1.08010 * 119.99909 * 0.02562 * 1 2 3 24 24 H 1.07998 * 119.99711 * 179.97438 * 2 1 3 25 25 H 1.09005 * 109.47271 * 4.99527 * 3 2 1 26 26 H 1.08999 * 109.47187 * 244.99809 * 3 2 1 27 27 H 1.08999 * 109.47305 * 59.99775 * 4 3 2 28 28 H 1.08999 * 109.47052 * 300.00309 * 4 3 2 29 29 H 1.09004 * 109.46666 * 269.99777 * 8 7 5 30 30 H 1.08999 * 109.47266 * 29.99467 * 8 7 5 31 31 H 1.08995 * 109.47412 * 150.00054 * 8 7 5 32 32 H 1.09002 * 112.90477 * 11.25212 * 9 7 5 33 33 H 1.09004 * 113.61451 * 105.47149 * 10 9 7 34 34 H 1.08994 * 113.61477 * 334.56451 * 10 9 7 35 35 H 1.09000 * 113.61529 * 270.88430 * 11 10 9 36 36 H 0.97005 * 120.00129 * 334.99728 * 12 11 10 37 37 H 0.97007 * 119.99563 * 179.97438 * 16 15 13 38 38 H 1.09006 * 113.61307 * 25.43652 * 21 9 7 39 39 H 1.09007 * 113.61642 * 254.53409 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0350 1.3331 1.1816 5 6 3.7889 2.6379 1.1813 6 8 3.5711 3.4639 0.3203 7 7 4.7053 2.8870 2.1376 8 6 4.9689 1.8890 3.1773 9 6 5.4387 4.1552 2.1369 10 6 6.9623 3.9857 2.0150 11 6 7.0918 5.1200 3.0453 12 7 8.1523 4.8987 4.0316 13 6 8.7336 5.9657 4.6631 14 1 8.4105 6.9704 4.4337 15 6 9.7380 5.7559 5.5980 16 7 10.1312 4.5314 5.8778 17 14 10.5304 7.2114 6.4600 18 1 9.9140 8.4712 5.9721 19 1 10.3214 7.0926 7.9255 20 1 11.9862 7.2273 6.1672 21 6 5.6932 4.7204 3.5442 22 1 -0.5400 -0.9352 0.0004 23 1 -0.5400 0.9354 -0.0004 24 1 1.8499 -0.9353 0.0004 25 1 1.3586 2.1316 0.0895 26 1 2.6213 1.4025 -0.9314 27 1 3.7399 0.5066 1.0922 28 1 2.4772 1.2356 2.1130 29 1 4.3050 2.0627 4.0242 30 1 4.7925 0.8910 2.7761 31 1 6.0051 1.9709 3.5052 32 1 5.0236 4.8849 1.4418 33 1 7.3530 4.2433 1.0306 34 1 7.3250 3.0236 2.3770 35 1 7.1286 6.1136 2.5985 36 1 8.4426 3.9963 4.2374 37 1 10.8334 4.3849 6.5309 38 1 5.7090 3.9591 4.3243 39 1 5.0593 5.5711 3.7944 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001279209708.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:20:22 Heat of formation + Delta-G solvation = -8.936734 kcal Electronic energy + Delta-G solvation = -18247.370999 eV Core-core repulsion = 15383.536074 eV Total energy + Delta-G solvation = -2863.834924 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.34086 -39.47166 -36.31187 -36.13936 -34.85369 -32.13750 -31.31218 -27.96789 -26.77680 -26.42351 -25.50168 -23.31445 -20.66399 -20.64402 -19.96857 -19.04657 -18.14389 -17.35905 -16.96643 -16.38773 -16.17195 -15.80866 -15.28503 -14.97453 -14.74044 -14.30806 -13.94462 -13.56471 -13.45773 -13.26074 -13.19694 -13.14029 -12.87356 -12.80701 -12.22304 -12.12858 -11.98151 -11.96614 -11.87258 -11.68038 -11.41962 -10.89918 -10.76900 -10.18712 -9.57621 -8.99689 -7.95594 -5.23712 1.41666 1.48150 1.48644 1.58554 1.62836 2.07792 2.56750 3.36302 3.54131 3.76711 3.81069 3.93402 4.00900 4.15599 4.19811 4.27535 4.31025 4.39602 4.48356 4.62874 4.73039 4.74585 4.84229 4.87348 4.95751 4.99094 5.08327 5.11239 5.13063 5.24184 5.43461 5.52358 5.66641 5.78274 5.93727 6.26804 6.48146 7.18634 7.33537 8.08024 8.32456 9.27674 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.063781 B = 0.003445 C = 0.003364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 438.897296 B = 8125.459699 C = 8320.951869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.157 4.157 3 C -0.078 4.078 4 C -0.125 4.125 5 C 0.503 3.497 6 O -0.591 6.591 7 N -0.601 5.601 8 C 0.070 3.930 9 C 0.129 3.871 10 C -0.150 4.150 11 C 0.152 3.848 12 N -0.722 5.722 13 C -0.243 4.243 14 H 0.076 0.924 15 C -0.074 4.074 16 N -0.968 5.968 17 Si 0.971 3.029 18 H -0.268 1.268 19 H -0.293 1.293 20 H -0.294 1.294 21 C -0.161 4.161 22 H 0.112 0.888 23 H 0.091 0.909 24 H 0.126 0.874 25 H 0.057 0.943 26 H 0.065 0.935 27 H 0.119 0.881 28 H 0.113 0.887 29 H 0.068 0.932 30 H 0.103 0.897 31 H 0.067 0.933 32 H 0.104 0.896 33 H 0.066 0.934 34 H 0.083 0.917 35 H 0.076 0.924 36 H 0.376 0.624 37 H 0.251 0.749 38 H 0.082 0.918 39 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.414 -10.612 -8.433 21.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.175 4.175 3 C -0.116 4.116 4 C -0.164 4.164 5 C 0.294 3.706 6 O -0.472 6.472 7 N -0.332 5.332 8 C -0.072 4.072 9 C 0.025 3.975 10 C -0.190 4.190 11 C 0.042 3.958 12 N -0.360 5.360 13 C -0.375 4.375 14 H 0.093 0.907 15 C -0.266 4.266 16 N -0.618 5.618 17 Si 0.800 3.200 18 H -0.192 1.192 19 H -0.220 1.220 20 H -0.221 1.221 21 C -0.202 4.202 22 H 0.130 0.870 23 H 0.110 0.890 24 H 0.144 0.856 25 H 0.075 0.925 26 H 0.084 0.916 27 H 0.137 0.863 28 H 0.131 0.869 29 H 0.086 0.914 30 H 0.121 0.879 31 H 0.086 0.914 32 H 0.122 0.878 33 H 0.085 0.915 34 H 0.101 0.899 35 H 0.094 0.906 36 H 0.208 0.792 37 H 0.060 0.940 38 H 0.100 0.900 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -16.469 -9.993 -8.810 21.182 hybrid contribution 0.875 0.573 0.719 1.269 sum -15.594 -9.420 -8.090 19.934 Atomic orbital electron populations 1.24041 0.96062 1.02451 1.00651 1.22990 0.96186 0.98036 1.00295 1.20454 0.97588 0.95865 0.97702 1.21686 0.98953 0.94014 1.01774 1.21491 0.79196 0.89914 0.79998 1.90655 1.67433 1.50181 1.38944 1.47972 1.38837 1.17908 1.28509 1.22011 1.02533 0.91910 0.90770 1.22216 0.90891 0.86280 0.98135 1.23765 0.95408 1.00082 0.99720 1.21628 0.87472 0.96924 0.89817 1.42492 1.41624 1.05824 1.46074 1.19715 1.13301 0.88770 1.15735 0.90655 1.25530 1.00706 0.98887 1.01510 1.69806 1.33421 1.20468 1.38125 0.85110 0.77756 0.79287 0.77833 1.19202 1.22018 1.22136 1.24081 0.99310 1.00745 0.96068 0.86969 0.89022 0.85578 0.92469 0.91633 0.86265 0.86872 0.91378 0.87879 0.91439 0.87828 0.91482 0.89900 0.90613 0.79189 0.93984 0.89977 0.91986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.51 14.32 67.78 0.97 -1.54 16 2 C -0.16 -2.12 9.52 25.65 0.24 -1.88 16 3 C -0.08 -1.40 4.95 29.85 0.15 -1.26 16 4 C -0.12 -2.04 4.23 29.85 0.13 -1.91 16 5 C 0.50 13.08 7.67 87.66 0.67 13.75 16 6 O -0.59 -20.32 15.47 -3.05 -0.05 -20.37 16 7 N -0.60 -15.33 3.08 -819.64 -2.53 -17.85 16 8 C 0.07 1.33 8.85 127.77 1.13 2.46 16 9 C 0.13 3.94 4.20 45.52 0.19 4.13 16 10 C -0.15 -4.92 7.37 31.12 0.23 -4.70 16 11 C 0.15 5.93 4.48 45.52 0.20 6.13 16 12 N -0.72 -35.63 5.40 -320.44 -1.73 -37.36 16 13 C -0.24 -13.33 9.97 84.03 0.84 -12.50 16 14 H 0.08 3.99 7.83 -2.91 -0.02 3.97 16 15 C -0.07 -4.19 5.50 84.86 0.47 -3.72 16 16 N -0.97 -58.09 13.06 21.65 0.28 -57.81 16 17 Si 0.97 45.69 29.55 68.60 2.03 47.72 16 18 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 19 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 20 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 21 C -0.16 -5.37 7.30 31.12 0.23 -5.14 16 22 H 0.11 1.08 8.06 -2.91 -0.02 1.06 16 23 H 0.09 1.25 7.84 -2.91 -0.02 1.22 16 24 H 0.13 1.26 8.06 -2.91 -0.02 1.24 16 25 H 0.06 1.20 7.75 -2.38 -0.02 1.18 16 26 H 0.07 1.35 8.10 -2.39 -0.02 1.33 16 27 H 0.12 1.37 7.40 -2.39 -0.02 1.35 16 28 H 0.11 1.44 8.11 -2.39 -0.02 1.42 16 29 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 30 H 0.10 1.27 6.44 -2.39 -0.02 1.25 16 31 H 0.07 1.51 6.33 -2.39 -0.02 1.50 16 32 H 0.10 3.40 7.24 -2.39 -0.02 3.38 16 33 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 34 H 0.08 2.71 6.89 -2.39 -0.02 2.70 16 35 H 0.08 2.98 8.10 -2.39 -0.02 2.96 16 36 H 0.38 19.63 7.92 -92.70 -0.73 18.90 16 37 H 0.25 14.61 8.31 -92.70 -0.77 13.84 16 38 H 0.08 2.78 6.72 -2.38 -0.02 2.77 16 39 H 0.06 2.03 8.14 -2.38 -0.02 2.02 16 Total: -1.00 -67.60 321.78 3.74 -63.86 By element: Atomic # 1 Polarization: 27.69 SS G_CDS: 0.29 Total: 27.98 kcal Atomic # 6 Polarization: -11.62 SS G_CDS: 5.45 Total: -6.17 kcal Atomic # 7 Polarization: -109.04 SS G_CDS: -3.98 Total: -113.02 kcal Atomic # 8 Polarization: -20.32 SS G_CDS: -0.05 Total: -20.37 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.72 kcal Total: -67.60 3.74 -63.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279209708.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.922 kcal (2) G-P(sol) polarization free energy of solvation -67.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds