Wall clock time and date at job start Sun Mar 29 2020 23:45:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46743 * 2 1 4 4 N 1.46508 * 109.46848 * 184.89402 * 3 2 1 5 5 C 1.36739 * 127.13103 * 274.80688 * 4 3 2 6 6 C 1.50698 * 126.35142 * 359.97438 * 5 4 3 7 7 N 1.30291 * 107.30369 * 180.02562 * 5 4 3 8 8 N 1.28532 * 110.05466 * 359.73295 * 7 5 4 9 9 C 1.31217 * 109.85998 * 0.44784 * 8 7 5 10 10 N 1.38569 * 126.47830 * 179.82582 * 9 8 7 11 11 C 1.46898 * 111.00367 * 64.63055 * 10 9 8 12 12 C 1.46907 * 110.99714 * 300.67834 * 10 9 8 13 13 H 1.08994 * 109.47334 * 310.00102 * 12 10 9 14 14 C 1.52996 * 109.46882 * 70.00033 * 12 10 9 15 15 C 1.50699 * 109.47097 * 189.99880 * 12 10 9 16 16 H 1.07999 * 120.00122 * 354.22869 * 15 12 10 17 17 C 1.37875 * 119.99719 * 174.22692 * 15 12 10 18 18 N 1.31513 * 119.99833 * 158.22784 * 17 15 12 19 19 Si 1.86798 * 120.00294 * 338.22927 * 17 15 12 20 20 H 1.48497 * 109.47255 * 270.00002 * 19 17 15 21 21 H 1.48498 * 109.46948 * 30.00156 * 19 17 15 22 22 H 1.48507 * 109.46974 * 149.99792 * 19 17 15 23 23 H 1.09001 * 109.46897 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47610 * 300.00293 * 1 2 3 25 25 H 1.09006 * 109.46956 * 60.00411 * 1 2 3 26 26 H 1.08999 * 109.47610 * 239.99707 * 2 1 3 27 27 H 1.08997 * 109.46857 * 119.99711 * 2 1 3 28 28 H 1.08998 * 109.47432 * 64.88982 * 3 2 1 29 29 H 1.09005 * 109.47200 * 304.88635 * 3 2 1 30 30 H 1.08998 * 109.47706 * 89.99710 * 6 5 4 31 31 H 1.08996 * 109.47159 * 209.99489 * 6 5 4 32 32 H 1.09005 * 109.46870 * 329.99034 * 6 5 4 33 33 H 1.09004 * 109.46990 * 303.73355 * 11 10 9 34 34 H 1.09002 * 109.46589 * 63.72680 * 11 10 9 35 35 H 1.08994 * 109.47237 * 183.72780 * 11 10 9 36 36 H 1.09000 * 109.47247 * 294.14318 * 14 12 10 37 37 H 1.09002 * 109.47517 * 54.14090 * 14 12 10 38 38 H 1.09001 * 109.47403 * 174.14441 * 14 12 10 39 39 H 0.97001 * 120.00489 * 354.93399 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5002 1.4443 -0.1178 5 6 4.4102 1.3230 0.8955 6 6 4.0988 1.1611 2.3611 7 7 5.5966 1.3745 0.3593 8 7 5.4987 1.5134 -0.9148 9 6 4.2343 1.5678 -1.2614 10 7 3.7382 1.7167 -2.5467 11 6 4.0826 0.5580 -3.3815 12 6 4.2179 2.9649 -3.1548 13 1 4.0456 3.7934 -2.4679 14 6 5.7151 2.8474 -3.4469 15 6 3.4734 3.2156 -4.4409 16 1 2.7873 2.4733 -4.8212 17 6 3.6682 4.3926 -5.1320 18 7 3.3862 4.4562 -6.4150 19 14 4.3327 5.8969 -4.2461 20 1 3.2016 6.6922 -3.7043 21 1 5.2136 5.4658 -3.1311 22 1 5.1112 6.7287 -5.1987 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.7498 1.9305 0.9305 29 1 1.6068 1.9810 -0.8430 30 1 4.0153 0.1009 2.5999 31 1 4.8987 1.6050 2.9537 32 1 3.1573 1.6605 2.5898 33 1 5.1637 0.4184 -3.3809 34 1 3.6009 -0.3341 -2.9813 35 1 3.7389 0.7301 -4.4014 36 1 6.2634 2.7703 -2.5080 37 1 5.8991 1.9578 -4.0492 38 1 6.0495 3.7305 -3.9914 39 1 3.1114 3.6572 -6.8914 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001307012919.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:45:26 Heat of formation + Delta-G solvation = 83.432945 kcal Electronic energy + Delta-G solvation = -19622.273008 eV Core-core repulsion = 16794.736285 eV Total energy + Delta-G solvation = -2827.536724 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.58779 -37.42384 -36.07782 -32.92799 -32.58349 -31.47824 -29.45610 -27.29284 -26.58383 -25.45747 -24.54713 -22.23579 -21.42882 -20.38267 -19.35403 -17.40647 -16.70437 -15.94565 -15.72396 -15.21021 -14.36932 -14.06471 -13.64918 -13.50256 -13.34028 -12.96113 -12.68027 -12.42165 -12.37103 -12.21372 -11.91966 -11.66527 -11.50394 -11.29142 -11.17460 -10.97355 -10.89201 -10.42859 -10.12165 -10.00684 -9.77984 -9.66876 -8.99402 -8.51868 -8.22033 -7.90258 -6.52154 -4.09929 2.09197 2.61645 3.23110 3.39952 3.45084 3.59155 4.43684 4.47737 4.53397 4.60150 4.74441 4.96632 5.08639 5.17216 5.19082 5.37830 5.43664 5.54712 5.61605 5.69206 5.77236 5.88475 5.89296 6.06948 6.12683 6.19809 6.34229 6.43476 6.55641 6.70515 6.78722 6.90550 7.15578 7.29793 7.64869 7.76176 8.25178 8.37675 8.88948 9.16190 9.53968 10.87145 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.022219 B = 0.007297 C = 0.006522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.892639 B = 3836.240616 C = 4291.856678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.134 4.134 3 C 0.111 3.889 4 N -0.469 5.469 5 C 0.156 3.844 6 C -0.057 4.057 7 N -0.296 5.296 8 N -0.316 5.316 9 C 0.368 3.632 10 N -0.460 5.460 11 C 0.046 3.954 12 C 0.203 3.797 13 H 0.030 0.970 14 C -0.178 4.178 15 C -0.596 4.596 16 H 0.067 0.933 17 C 0.042 3.958 18 N -0.897 5.897 19 Si 1.034 2.966 20 H -0.285 1.285 21 H -0.276 1.276 22 H -0.284 1.284 23 H 0.059 0.941 24 H 0.056 0.944 25 H 0.063 0.937 26 H 0.071 0.929 27 H 0.064 0.936 28 H 0.087 0.913 29 H 0.107 0.893 30 H 0.079 0.921 31 H 0.090 0.910 32 H 0.072 0.928 33 H 0.039 0.961 34 H 0.045 0.955 35 H 0.091 0.909 36 H 0.051 0.949 37 H 0.047 0.953 38 H 0.048 0.952 39 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.649 -7.871 15.174 17.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.173 4.173 3 C -0.012 4.012 4 N -0.162 5.162 5 C -0.112 4.112 6 C -0.117 4.117 7 N -0.137 5.137 8 N -0.159 5.159 9 C 0.012 3.988 10 N -0.186 5.186 11 C -0.101 4.101 12 C 0.097 3.903 13 H 0.048 0.952 14 C -0.237 4.237 15 C -0.634 4.634 16 H 0.085 0.915 17 C -0.165 4.165 18 N -0.530 5.530 19 Si 0.861 3.139 20 H -0.212 1.212 21 H -0.201 1.201 22 H -0.210 1.210 23 H 0.078 0.922 24 H 0.075 0.925 25 H 0.082 0.918 26 H 0.089 0.911 27 H 0.082 0.918 28 H 0.105 0.895 29 H 0.126 0.874 30 H 0.098 0.902 31 H 0.109 0.891 32 H 0.091 0.909 33 H 0.057 0.943 34 H 0.064 0.936 35 H 0.109 0.891 36 H 0.070 0.930 37 H 0.066 0.934 38 H 0.067 0.933 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.313 -6.234 14.852 16.444 hybrid contribution -1.067 -1.588 0.155 1.920 sum -4.380 -7.822 15.007 17.481 Atomic orbital electron populations 1.21678 0.94231 1.02226 1.02412 1.21832 0.96853 0.95654 1.02939 1.21918 0.75923 0.98731 1.04658 1.46432 1.08354 1.54533 1.06898 1.24658 0.86182 1.06925 0.93400 1.20091 1.02933 1.03073 0.85573 1.73950 1.19673 1.18136 1.01961 1.74715 1.15298 1.20734 1.05127 1.22978 0.85968 1.00759 0.89070 1.59291 1.57507 1.06239 0.95531 1.22272 0.99411 0.90024 0.98411 1.19755 0.91529 0.84023 0.94982 0.95250 1.22779 0.99227 1.01076 1.00624 1.21815 1.28803 1.06690 1.06088 0.91492 1.25558 0.94990 1.00714 0.95193 1.70824 1.41518 1.33146 1.07489 0.84174 0.77202 0.76311 0.76193 1.21200 1.20105 1.20965 0.92193 0.92505 0.91836 0.91062 0.91752 0.89511 0.87424 0.90223 0.89106 0.90884 0.94273 0.93626 0.89079 0.93039 0.93352 0.93276 0.91981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.91 37.16 0.37 -0.88 16 2 C -0.13 -1.41 6.26 -26.73 -0.17 -1.58 16 3 C 0.11 1.39 5.98 -4.04 -0.02 1.36 16 4 N -0.47 -7.76 2.81 -114.08 -0.32 -8.08 16 5 C 0.16 2.47 8.07 -154.02 -1.24 1.23 16 6 C -0.06 -0.57 10.26 36.00 0.37 -0.20 16 7 N -0.30 -5.87 12.18 32.99 0.40 -5.46 16 8 N -0.32 -6.91 9.84 30.31 0.30 -6.61 16 9 C 0.37 7.53 6.32 -318.89 -2.01 5.52 16 10 N -0.46 -9.92 4.71 -176.09 -0.83 -10.75 16 11 C 0.05 0.92 8.57 60.06 0.52 1.43 16 12 C 0.20 4.99 1.83 -68.86 -0.13 4.86 16 13 H 0.03 0.77 6.43 -51.93 -0.33 0.43 16 14 C -0.18 -4.27 7.89 37.16 0.29 -3.97 16 15 C -0.60 -16.23 8.20 -34.44 -0.28 -16.51 16 16 H 0.07 1.93 7.18 -52.49 -0.38 1.55 16 17 C 0.04 1.19 5.23 -17.82 -0.09 1.09 16 18 N -0.90 -26.79 13.69 55.43 0.76 -26.03 16 19 Si 1.03 25.32 26.37 -169.99 -4.48 20.84 16 20 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 21 H -0.28 -6.53 5.96 56.52 0.34 -6.19 16 22 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 23 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.09 0.84 7.40 -51.93 -0.38 0.45 16 29 H 0.11 1.53 8.12 -51.93 -0.42 1.11 16 30 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.07 0.56 7.38 -51.93 -0.38 0.18 16 33 H 0.04 0.79 6.51 -51.93 -0.34 0.45 16 34 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.09 1.90 6.57 -51.93 -0.34 1.55 16 36 H 0.05 1.22 6.07 -51.93 -0.32 0.91 16 37 H 0.05 1.12 6.16 -51.93 -0.32 0.80 16 38 H 0.05 1.19 5.75 -51.93 -0.30 0.90 16 39 H 0.27 7.99 8.73 -40.82 -0.36 7.63 16 LS Contribution 309.73 15.07 4.67 4.67 Total: -1.00 -32.30 309.73 -8.02 -40.32 By element: Atomic # 1 Polarization: 4.86 SS G_CDS: -6.11 Total: -1.26 kcal Atomic # 6 Polarization: -5.24 SS G_CDS: -2.40 Total: -7.64 kcal Atomic # 7 Polarization: -57.23 SS G_CDS: 0.31 Total: -56.93 kcal Atomic # 14 Polarization: 25.32 SS G_CDS: -4.48 Total: 20.84 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -32.30 -8.02 -40.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001307012919.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.753 kcal (2) G-P(sol) polarization free energy of solvation -32.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds