Wall clock time and date at job start Sun Mar 29 2020 23:45:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46743 * 2 1 4 4 N 1.46508 * 109.46848 * 184.89402 * 3 2 1 5 5 C 1.36739 * 127.13103 * 274.80688 * 4 3 2 6 6 C 1.50698 * 126.35142 * 359.97438 * 5 4 3 7 7 N 1.30291 * 107.30369 * 180.02562 * 5 4 3 8 8 N 1.28532 * 110.05466 * 359.73295 * 7 5 4 9 9 C 1.31217 * 109.85998 * 0.44784 * 8 7 5 10 10 N 1.38569 * 126.47830 * 179.82582 * 9 8 7 11 11 C 1.46898 * 111.00367 * 64.63055 * 10 9 8 12 12 C 1.46907 * 110.99714 * 300.67834 * 10 9 8 13 13 H 1.08994 * 109.47334 * 310.00102 * 12 10 9 14 14 C 1.52996 * 109.46882 * 70.00033 * 12 10 9 15 15 C 1.50699 * 109.47097 * 189.99880 * 12 10 9 16 16 H 1.07999 * 120.00122 * 354.22869 * 15 12 10 17 17 C 1.37875 * 119.99719 * 174.22692 * 15 12 10 18 18 N 1.31513 * 119.99833 * 158.22784 * 17 15 12 19 19 Si 1.86798 * 120.00294 * 338.22927 * 17 15 12 20 20 H 1.48497 * 109.47255 * 270.00002 * 19 17 15 21 21 H 1.48498 * 109.46948 * 30.00156 * 19 17 15 22 22 H 1.48507 * 109.46974 * 149.99792 * 19 17 15 23 23 H 1.09001 * 109.46897 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47610 * 300.00293 * 1 2 3 25 25 H 1.09006 * 109.46956 * 60.00411 * 1 2 3 26 26 H 1.08999 * 109.47610 * 239.99707 * 2 1 3 27 27 H 1.08997 * 109.46857 * 119.99711 * 2 1 3 28 28 H 1.08998 * 109.47432 * 64.88982 * 3 2 1 29 29 H 1.09005 * 109.47200 * 304.88635 * 3 2 1 30 30 H 1.08998 * 109.47706 * 89.99710 * 6 5 4 31 31 H 1.08996 * 109.47159 * 209.99489 * 6 5 4 32 32 H 1.09005 * 109.46870 * 329.99034 * 6 5 4 33 33 H 1.09004 * 109.46990 * 303.73355 * 11 10 9 34 34 H 1.09002 * 109.46589 * 63.72680 * 11 10 9 35 35 H 1.08994 * 109.47237 * 183.72780 * 11 10 9 36 36 H 1.09000 * 109.47247 * 294.14318 * 14 12 10 37 37 H 1.09002 * 109.47517 * 54.14090 * 14 12 10 38 38 H 1.09001 * 109.47403 * 174.14441 * 14 12 10 39 39 H 0.97001 * 120.00489 * 354.93399 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5002 1.4443 -0.1178 5 6 4.4102 1.3230 0.8955 6 6 4.0988 1.1611 2.3611 7 7 5.5966 1.3745 0.3593 8 7 5.4987 1.5134 -0.9148 9 6 4.2343 1.5678 -1.2614 10 7 3.7382 1.7167 -2.5467 11 6 4.0826 0.5580 -3.3815 12 6 4.2179 2.9649 -3.1548 13 1 4.0456 3.7934 -2.4679 14 6 5.7151 2.8474 -3.4469 15 6 3.4734 3.2156 -4.4409 16 1 2.7873 2.4733 -4.8212 17 6 3.6682 4.3926 -5.1320 18 7 3.3862 4.4562 -6.4150 19 14 4.3327 5.8969 -4.2461 20 1 3.2016 6.6922 -3.7043 21 1 5.2136 5.4658 -3.1311 22 1 5.1112 6.7287 -5.1987 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.7498 1.9305 0.9305 29 1 1.6068 1.9810 -0.8430 30 1 4.0153 0.1009 2.5999 31 1 4.8987 1.6050 2.9537 32 1 3.1573 1.6605 2.5898 33 1 5.1637 0.4184 -3.3809 34 1 3.6009 -0.3341 -2.9813 35 1 3.7389 0.7301 -4.4014 36 1 6.2634 2.7703 -2.5080 37 1 5.8991 1.9578 -4.0492 38 1 6.0495 3.7305 -3.9914 39 1 3.1114 3.6572 -6.8914 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001307012919.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:45:26 Heat of formation + Delta-G solvation = 63.964364 kcal Electronic energy + Delta-G solvation = -19623.117229 eV Core-core repulsion = 16794.736285 eV Total energy + Delta-G solvation = -2828.380945 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.97695 -39.18095 -37.16051 -34.97795 -33.61749 -32.80087 -31.27880 -28.57316 -27.59852 -27.18886 -26.49467 -23.33467 -22.90753 -21.62833 -21.03801 -19.50677 -18.07085 -17.36064 -17.29245 -16.21058 -15.98521 -15.41712 -15.27414 -14.93506 -14.54996 -14.37356 -13.98030 -13.64349 -13.59905 -13.35252 -13.29882 -13.14267 -13.06311 -12.75879 -12.67074 -12.43782 -12.16573 -12.07291 -11.80535 -11.63918 -11.50894 -11.06651 -10.97025 -10.40414 -9.94917 -9.63132 -8.77326 -6.34887 0.74636 1.34772 1.43552 1.47213 1.66257 1.79839 2.43950 2.92248 3.00062 3.50068 3.64817 3.85848 4.01864 4.08071 4.27137 4.32505 4.38564 4.44034 4.52574 4.55666 4.71365 4.73535 4.79411 4.81232 4.90309 4.95685 4.99603 5.02296 5.08253 5.11808 5.23863 5.36382 5.37391 5.64533 5.83516 5.91367 6.07500 6.51674 6.64336 7.35467 7.74147 8.61422 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.022219 B = 0.007297 C = 0.006522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.892639 B = 3836.240616 C = 4291.856678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.126 4.126 3 C 0.104 3.896 4 N -0.465 5.465 5 C 0.180 3.820 6 C -0.058 4.058 7 N -0.339 5.339 8 N -0.347 5.347 9 C 0.342 3.658 10 N -0.460 5.460 11 C 0.054 3.946 12 C 0.211 3.789 13 H 0.019 0.981 14 C -0.168 4.168 15 C -0.589 4.589 16 H 0.041 0.959 17 C -0.002 4.002 18 N -0.925 5.925 19 Si 1.071 2.929 20 H -0.268 1.268 21 H -0.265 1.265 22 H -0.281 1.281 23 H 0.069 0.931 24 H 0.078 0.922 25 H 0.049 0.951 26 H 0.043 0.957 27 H 0.083 0.917 28 H 0.126 0.874 29 H 0.086 0.914 30 H 0.105 0.895 31 H 0.100 0.900 32 H 0.104 0.896 33 H 0.031 0.969 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.053 0.947 37 H 0.047 0.953 38 H 0.041 0.959 39 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.494 -8.101 18.441 20.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.164 4.164 3 C -0.018 4.018 4 N -0.157 5.157 5 C -0.088 4.088 6 C -0.117 4.117 7 N -0.179 5.179 8 N -0.190 5.190 9 C -0.015 4.015 10 N -0.185 5.185 11 C -0.094 4.094 12 C 0.103 3.897 13 H 0.037 0.963 14 C -0.227 4.227 15 C -0.627 4.627 16 H 0.060 0.940 17 C -0.203 4.203 18 N -0.560 5.560 19 Si 0.893 3.107 20 H -0.194 1.194 21 H -0.190 1.190 22 H -0.207 1.207 23 H 0.088 0.912 24 H 0.097 0.903 25 H 0.068 0.932 26 H 0.062 0.938 27 H 0.102 0.898 28 H 0.144 0.856 29 H 0.104 0.896 30 H 0.123 0.877 31 H 0.119 0.881 32 H 0.122 0.878 33 H 0.050 0.950 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.072 0.928 37 H 0.066 0.934 38 H 0.060 0.940 39 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -4.185 -6.488 18.138 19.713 hybrid contribution -0.863 -1.636 -0.758 1.999 sum -5.048 -8.125 17.380 19.839 Atomic orbital electron populations 1.21654 0.92550 1.03033 1.02818 1.21780 0.98136 0.94015 1.02502 1.22268 0.73516 1.00283 1.05689 1.46667 1.09847 1.53517 1.05711 1.25810 0.84880 1.02787 0.95341 1.20458 1.04824 1.05281 0.81126 1.73877 1.21934 1.20872 1.01262 1.74562 1.16415 1.21425 1.06627 1.22790 0.86482 1.03035 0.89232 1.59108 1.57516 1.05408 0.96509 1.22194 0.99056 0.90562 0.97554 1.19468 0.91288 0.85429 0.93499 0.96283 1.22652 0.98866 1.00647 1.00525 1.21878 1.27985 1.05861 1.07012 0.94043 1.26695 0.94981 1.03451 0.95127 1.70923 1.43840 1.32706 1.08533 0.83673 0.77508 0.73845 0.75648 1.19382 1.19013 1.20711 0.91216 0.90328 0.93209 0.93793 0.89849 0.85637 0.89597 0.87683 0.88112 0.87787 0.94997 0.91188 0.90778 0.92823 0.93424 0.94020 0.93169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 9.91 71.98 0.71 -1.29 16 2 C -0.13 -2.30 6.26 30.59 0.19 -2.11 16 3 C 0.10 2.32 5.98 86.38 0.52 2.83 16 4 N -0.46 -14.43 2.81 -514.84 -1.45 -15.87 16 5 C 0.18 5.21 8.07 137.64 1.11 6.32 16 6 C -0.06 -0.87 10.26 71.24 0.73 -0.13 16 7 N -0.34 -13.00 12.18 -49.54 -0.60 -13.61 16 8 N -0.35 -15.09 9.84 -58.01 -0.57 -15.66 16 9 C 0.34 13.83 6.32 260.12 1.64 15.47 16 10 N -0.46 -20.02 4.71 -711.01 -3.35 -23.37 16 11 C 0.05 2.17 8.57 127.69 1.09 3.27 16 12 C 0.21 10.42 1.83 44.17 0.08 10.50 16 13 H 0.02 1.00 6.43 -2.39 -0.02 0.98 16 14 C -0.17 -8.12 7.89 71.98 0.57 -7.55 16 15 C -0.59 -32.83 8.20 25.60 0.21 -32.62 16 16 H 0.04 2.48 7.18 -2.91 -0.02 2.46 16 17 C 0.00 -0.09 5.23 84.65 0.44 0.35 16 18 N -0.93 -56.49 13.69 21.45 0.29 -56.19 16 19 Si 1.07 51.07 26.37 68.60 1.81 52.88 16 20 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 21 H -0.27 -12.13 5.96 99.48 0.59 -11.54 16 22 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 23 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 24 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 25 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 26 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.08 1.22 8.14 -2.39 -0.02 1.21 16 28 H 0.13 1.83 7.40 -2.39 -0.02 1.81 16 29 H 0.09 2.34 8.12 -2.38 -0.02 2.32 16 30 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.10 0.96 7.38 -2.38 -0.02 0.94 16 33 H 0.03 1.31 6.51 -2.38 -0.02 1.30 16 34 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 35 H 0.07 3.20 6.57 -2.39 -0.02 3.19 16 36 H 0.05 2.57 6.07 -2.39 -0.01 2.55 16 37 H 0.05 2.25 6.16 -2.39 -0.01 2.24 16 38 H 0.04 2.03 5.75 -2.39 -0.01 2.01 16 39 H 0.26 15.89 8.73 -92.71 -0.81 15.08 16 Total: -1.00 -72.04 309.73 4.31 -67.73 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: 0.88 Total: 9.05 kcal Atomic # 6 Polarization: -12.25 SS G_CDS: 7.30 Total: -4.95 kcal Atomic # 7 Polarization: -119.03 SS G_CDS: -5.68 Total: -124.71 kcal Atomic # 14 Polarization: 51.07 SS G_CDS: 1.81 Total: 52.88 kcal Total: -72.04 4.31 -67.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001307012919.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.693 kcal (2) G-P(sol) polarization free energy of solvation -72.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.729 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds