Wall clock time and date at job start Sun Mar 29 2020 23:30:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36935 * 120.00081 * 2 1 4 4 H 1.08002 * 120.00691 * 203.04492 * 3 2 1 5 5 C 1.38812 * 120.00102 * 23.04471 * 3 2 1 6 6 N 1.31625 * 119.99445 * 12.92594 * 5 3 2 7 7 Si 1.86800 * 120.00470 * 192.92909 * 5 3 2 8 8 H 1.48500 * 109.46824 * 89.99832 * 7 5 3 9 9 H 1.48493 * 109.47041 * 209.99947 * 7 5 3 10 10 H 1.48496 * 109.46735 * 329.99914 * 7 5 3 11 11 C 1.46505 * 120.00117 * 180.02562 * 2 1 3 12 12 C 1.52997 * 109.47239 * 90.00324 * 11 2 1 13 13 N 1.46495 * 109.47165 * 180.02562 * 12 11 2 14 14 C 1.34780 * 120.00391 * 179.72274 * 13 12 11 15 15 O 1.21281 * 119.99355 * 0.27280 * 14 13 12 16 16 C 1.50696 * 120.00495 * 180.27683 * 14 13 12 17 17 H 1.09004 * 110.67132 * 56.76097 * 16 14 13 18 18 C 1.54884 * 110.75675 * 179.97438 * 16 14 13 19 19 C 1.54272 * 104.19560 * 156.25379 * 18 16 14 20 20 H 1.09002 * 117.40898 * 116.36831 * 19 18 16 21 21 C 1.52999 * 118.20113 * 270.99969 * 19 18 16 22 22 C 1.53872 * 106.59711 * 336.39343 * 19 18 16 23 23 H 1.09000 * 121.32989 * 138.62981 * 22 19 18 24 24 C 1.54264 * 106.59913 * 359.97438 * 22 19 18 25 25 H 1.09001 * 109.47343 * 275.12008 * 1 2 3 26 26 H 1.09000 * 109.47390 * 35.12529 * 1 2 3 27 27 H 1.09006 * 109.47105 * 155.11972 * 1 2 3 28 28 H 0.97001 * 119.99709 * 179.97438 * 6 5 3 29 29 H 1.08998 * 109.47044 * 330.00019 * 11 2 1 30 30 H 1.09004 * 109.46808 * 210.00094 * 11 2 1 31 31 H 1.08998 * 109.47352 * 59.99883 * 12 11 2 32 32 H 1.09004 * 109.47032 * 299.99632 * 12 11 2 33 33 H 0.97008 * 120.00076 * 0.02562 * 13 12 11 34 34 H 1.08995 * 110.48686 * 274.93201 * 18 16 14 35 35 H 1.08995 * 110.48916 * 37.57981 * 18 16 14 36 36 H 1.08997 * 117.45781 * 201.21251 * 21 19 18 37 37 H 1.08998 * 117.45811 * 346.03946 * 21 19 18 38 38 H 1.08999 * 110.48844 * 264.93162 * 24 22 19 39 39 H 1.09003 * 110.48396 * 142.29086 * 24 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1650 1.2233 -0.3661 5 6 1.5387 2.3401 0.4706 6 7 0.4117 2.2596 1.1458 7 14 2.3158 4.0074 0.1456 8 1 1.7987 4.5533 -1.1349 9 1 1.9758 4.9363 1.2531 10 1 3.7908 3.8577 0.0602 11 6 2.1975 -1.2688 -0.0006 12 6 2.4526 -1.7097 -1.4432 13 7 3.1846 -2.9787 -1.4438 14 6 3.5166 -3.5647 -2.6112 15 8 3.2138 -3.0389 -3.6613 16 6 4.2641 -4.8732 -2.6118 17 1 3.7154 -5.6301 -2.0512 18 6 4.5331 -5.3511 -4.0603 19 6 5.7578 -6.2803 -3.9309 20 1 5.6200 -7.3308 -4.1870 21 6 7.1516 -5.6591 -4.0423 22 6 6.4949 -5.8597 -2.6474 23 1 6.9082 -6.6002 -1.9626 24 6 5.6928 -4.6893 -2.0420 25 1 -0.3634 0.0917 1.0236 26 1 -0.3634 0.8405 -0.5913 27 1 -0.3634 -0.9323 -0.4324 28 1 -0.0151 3.0661 1.4749 29 1 1.6084 -2.0286 0.5129 30 1 3.1499 -1.1386 0.5134 31 1 3.0417 -0.9499 -1.9567 32 1 1.5002 -1.8399 -1.9572 33 1 3.4264 -3.3995 -0.6038 34 1 3.6752 -5.9022 -4.4456 35 1 4.7640 -4.5033 -4.7051 36 1 7.9773 -6.3208 -4.3037 37 1 7.2198 -4.6448 -4.4354 38 1 6.1113 -3.7346 -2.3608 39 1 5.6810 -4.7573 -0.9541 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317457205.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:30:22 Heat of formation + Delta-G solvation = 3.413225 kcal Electronic energy + Delta-G solvation = -18354.045034 eV Core-core repulsion = 15490.745644 eV Total energy + Delta-G solvation = -2863.299390 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.28708 -38.39649 -36.03918 -34.14822 -32.12348 -31.17782 -28.51421 -28.00318 -25.86433 -24.37473 -22.73730 -21.12058 -20.65842 -19.88240 -19.58499 -17.03217 -16.57526 -16.55575 -15.62862 -15.07635 -14.69706 -14.20603 -13.80186 -13.42773 -13.28084 -13.15786 -13.06850 -12.40943 -12.29484 -11.76398 -11.49102 -11.32736 -11.26096 -11.16035 -10.87838 -10.86203 -10.59074 -10.34388 -10.22883 -9.96993 -9.94469 -9.91081 -9.49670 -8.68903 -8.56167 -6.79899 -5.74301 -3.22560 2.81530 3.32305 3.39002 3.44219 3.45862 3.48785 4.28442 4.41910 4.51146 4.59107 4.88213 4.99202 5.05632 5.17720 5.29735 5.37563 5.40033 5.53684 5.57730 5.63227 5.73276 5.82323 5.90165 5.93077 5.97508 6.01891 6.20289 6.25984 6.61919 6.65761 6.76645 6.90566 7.36300 7.70639 7.77918 7.79863 8.36837 8.47822 9.21097 9.83463 10.31633 11.30525 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.037672 B = 0.003841 C = 0.003689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.081972 B = 7287.180909 C = 7588.257695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.598 5.598 3 C -0.260 4.260 4 H 0.069 0.931 5 C 0.004 3.996 6 N -0.907 5.907 7 Si 0.906 3.094 8 H -0.287 1.287 9 H -0.291 1.291 10 H -0.279 1.279 11 C 0.144 3.856 12 C 0.094 3.906 13 N -0.723 5.723 14 C 0.514 3.486 15 O -0.544 6.544 16 C -0.113 4.113 17 H 0.101 0.899 18 C -0.078 4.078 19 C -0.163 4.163 20 H 0.109 0.891 21 C -0.156 4.156 22 C -0.168 4.168 23 H 0.113 0.887 24 C -0.084 4.084 25 H 0.033 0.967 26 H 0.042 0.958 27 H -0.001 1.001 28 H 0.253 0.747 29 H 0.040 0.960 30 H 0.052 0.948 31 H 0.065 0.935 32 H 0.058 0.942 33 H 0.396 0.604 34 H 0.072 0.928 35 H 0.082 0.918 36 H 0.097 0.903 37 H 0.094 0.906 38 H 0.074 0.926 39 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.778 -17.584 -5.299 20.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.320 5.320 3 C -0.389 4.389 4 H 0.087 0.913 5 C -0.195 4.195 6 N -0.551 5.551 7 Si 0.736 3.264 8 H -0.214 1.214 9 H -0.217 1.217 10 H -0.204 1.204 11 C 0.015 3.985 12 C -0.032 4.032 13 N -0.374 5.374 14 C 0.299 3.701 15 O -0.421 6.421 16 C -0.135 4.135 17 H 0.119 0.881 18 C -0.116 4.116 19 C -0.181 4.181 20 H 0.127 0.873 21 C -0.193 4.193 22 C -0.186 4.186 23 H 0.131 0.869 24 C -0.122 4.122 25 H 0.051 0.949 26 H 0.061 0.939 27 H 0.017 0.983 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.070 0.930 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.230 0.770 34 H 0.091 0.909 35 H 0.101 0.899 36 H 0.115 0.885 37 H 0.112 0.888 38 H 0.092 0.908 39 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 9.397 -17.011 -5.945 20.323 hybrid contribution 0.399 0.689 0.281 0.844 sum 9.796 -16.322 -5.664 19.861 Atomic orbital electron populations 1.20838 0.82331 0.95590 0.99605 1.43785 1.01947 1.00335 1.85978 1.19206 0.98386 0.85542 1.35801 0.91326 1.25033 0.97843 0.98614 0.97984 1.70076 1.19413 1.27288 1.38350 0.86225 0.78791 0.83920 0.77434 1.21390 1.21701 1.20425 1.20838 0.96695 0.89138 0.91784 1.22413 0.95616 0.83189 1.01998 1.46113 1.58188 1.25004 1.08050 1.20444 0.79396 0.86229 0.84006 1.90694 1.54696 1.65292 1.31456 1.22502 0.96629 0.95415 0.98950 0.88065 1.21798 0.96121 0.98675 0.94978 1.23276 0.92168 0.99847 1.02829 0.87319 1.23459 0.95157 1.02253 0.98387 1.23591 1.04050 1.00894 0.90049 0.86946 1.21885 0.92077 0.97968 1.00259 0.94855 0.93945 0.98285 0.93689 0.94130 0.92966 0.91648 0.92336 0.77034 0.90879 0.89936 0.88466 0.88751 0.90757 0.90378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.00 8.98 59.84 0.54 4.54 16 2 N -0.60 -15.08 2.92 -181.12 -0.53 -15.61 16 3 C -0.26 -7.19 9.65 -15.06 -0.15 -7.34 16 4 H 0.07 1.86 7.86 -52.49 -0.41 1.45 16 5 C 0.00 0.11 5.10 -17.43 -0.09 0.02 16 6 N -0.91 -26.53 10.71 55.49 0.59 -25.94 16 7 Si 0.91 22.04 29.57 -169.99 -5.03 17.02 16 8 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 9 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 C 0.14 2.86 5.76 -4.04 -0.02 2.83 16 12 C 0.09 1.74 6.00 -4.05 -0.02 1.71 16 13 N -0.72 -10.43 5.56 -60.30 -0.33 -10.77 16 14 C 0.51 7.71 7.13 -10.99 -0.08 7.63 16 15 O -0.54 -10.57 15.72 5.56 0.09 -10.48 16 16 C -0.11 -1.22 3.29 -89.77 -0.30 -1.52 16 17 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 18 C -0.08 -0.84 5.70 -25.07 -0.14 -0.99 16 19 C -0.16 -1.43 6.85 -89.50 -0.61 -2.04 16 20 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 21 C -0.16 -1.30 10.21 -25.42 -0.26 -1.56 16 22 C -0.17 -1.40 7.04 -88.19 -0.62 -2.02 16 23 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 24 C -0.08 -0.79 6.08 -25.06 -0.15 -0.94 16 25 H 0.03 0.88 7.34 -51.93 -0.38 0.50 16 26 H 0.04 1.13 7.34 -51.93 -0.38 0.75 16 27 H 0.00 -0.03 8.03 -51.93 -0.42 -0.45 16 28 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 29 H 0.04 0.73 8.07 -51.93 -0.42 0.31 16 30 H 0.05 1.01 8.04 -51.93 -0.42 0.59 16 31 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 32 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 33 H 0.40 4.44 8.47 -40.82 -0.35 4.10 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.08 1.07 7.43 -51.93 -0.39 0.68 16 36 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.07 0.80 8.04 -51.93 -0.42 0.39 16 39 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 LS Contribution 319.81 15.07 4.82 4.82 Total: -1.00 -32.03 319.81 -8.82 -40.85 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -6.52 Total: -0.21 kcal Atomic # 6 Polarization: 2.23 SS G_CDS: -1.91 Total: 0.32 kcal Atomic # 7 Polarization: -52.05 SS G_CDS: -0.27 Total: -52.32 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: 0.09 Total: -10.48 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.03 Total: 17.02 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -32.03 -8.82 -40.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317457205.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.262 kcal (2) G-P(sol) polarization free energy of solvation -32.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.849 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds