Wall clock time and date at job start Sun Mar 29 2020 23:30:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36935 * 120.00081 * 2 1 4 4 H 1.08002 * 120.00691 * 203.04492 * 3 2 1 5 5 C 1.38812 * 120.00102 * 23.04471 * 3 2 1 6 6 N 1.31625 * 119.99445 * 12.92594 * 5 3 2 7 7 Si 1.86800 * 120.00470 * 192.92909 * 5 3 2 8 8 H 1.48500 * 109.46824 * 89.99832 * 7 5 3 9 9 H 1.48493 * 109.47041 * 209.99947 * 7 5 3 10 10 H 1.48496 * 109.46735 * 329.99914 * 7 5 3 11 11 C 1.46505 * 120.00117 * 180.02562 * 2 1 3 12 12 C 1.52997 * 109.47239 * 90.00324 * 11 2 1 13 13 N 1.46495 * 109.47165 * 180.02562 * 12 11 2 14 14 C 1.34780 * 120.00391 * 179.72274 * 13 12 11 15 15 O 1.21281 * 119.99355 * 0.27280 * 14 13 12 16 16 C 1.50696 * 120.00495 * 180.27683 * 14 13 12 17 17 H 1.09004 * 110.67132 * 56.76097 * 16 14 13 18 18 C 1.54884 * 110.75675 * 179.97438 * 16 14 13 19 19 C 1.54272 * 104.19560 * 156.25379 * 18 16 14 20 20 H 1.09002 * 117.40898 * 116.36831 * 19 18 16 21 21 C 1.52999 * 118.20113 * 270.99969 * 19 18 16 22 22 C 1.53872 * 106.59711 * 336.39343 * 19 18 16 23 23 H 1.09000 * 121.32989 * 138.62981 * 22 19 18 24 24 C 1.54264 * 106.59913 * 359.97438 * 22 19 18 25 25 H 1.09001 * 109.47343 * 275.12008 * 1 2 3 26 26 H 1.09000 * 109.47390 * 35.12529 * 1 2 3 27 27 H 1.09006 * 109.47105 * 155.11972 * 1 2 3 28 28 H 0.97001 * 119.99709 * 179.97438 * 6 5 3 29 29 H 1.08998 * 109.47044 * 330.00019 * 11 2 1 30 30 H 1.09004 * 109.46808 * 210.00094 * 11 2 1 31 31 H 1.08998 * 109.47352 * 59.99883 * 12 11 2 32 32 H 1.09004 * 109.47032 * 299.99632 * 12 11 2 33 33 H 0.97008 * 120.00076 * 0.02562 * 13 12 11 34 34 H 1.08995 * 110.48686 * 274.93201 * 18 16 14 35 35 H 1.08995 * 110.48916 * 37.57981 * 18 16 14 36 36 H 1.08997 * 117.45781 * 201.21251 * 21 19 18 37 37 H 1.08998 * 117.45811 * 346.03946 * 21 19 18 38 38 H 1.08999 * 110.48844 * 264.93162 * 24 22 19 39 39 H 1.09003 * 110.48396 * 142.29086 * 24 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1650 1.2233 -0.3661 5 6 1.5387 2.3401 0.4706 6 7 0.4117 2.2596 1.1458 7 14 2.3158 4.0074 0.1456 8 1 1.7987 4.5533 -1.1349 9 1 1.9758 4.9363 1.2531 10 1 3.7908 3.8577 0.0602 11 6 2.1975 -1.2688 -0.0006 12 6 2.4526 -1.7097 -1.4432 13 7 3.1846 -2.9787 -1.4438 14 6 3.5166 -3.5647 -2.6112 15 8 3.2138 -3.0389 -3.6613 16 6 4.2641 -4.8732 -2.6118 17 1 3.7154 -5.6301 -2.0512 18 6 4.5331 -5.3511 -4.0603 19 6 5.7578 -6.2803 -3.9309 20 1 5.6200 -7.3308 -4.1870 21 6 7.1516 -5.6591 -4.0423 22 6 6.4949 -5.8597 -2.6474 23 1 6.9082 -6.6002 -1.9626 24 6 5.6928 -4.6893 -2.0420 25 1 -0.3634 0.0917 1.0236 26 1 -0.3634 0.8405 -0.5913 27 1 -0.3634 -0.9323 -0.4324 28 1 -0.0151 3.0661 1.4749 29 1 1.6084 -2.0286 0.5129 30 1 3.1499 -1.1386 0.5134 31 1 3.0417 -0.9499 -1.9567 32 1 1.5002 -1.8399 -1.9572 33 1 3.4264 -3.3995 -0.6038 34 1 3.6752 -5.9022 -4.4456 35 1 4.7640 -4.5033 -4.7051 36 1 7.9773 -6.3208 -4.3037 37 1 7.2198 -4.6448 -4.4354 38 1 6.1113 -3.7346 -2.3608 39 1 5.6810 -4.7573 -0.9541 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317457205.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:30:22 Heat of formation + Delta-G solvation = -16.809252 kcal Electronic energy + Delta-G solvation = -18354.921946 eV Core-core repulsion = 15490.745644 eV Total energy + Delta-G solvation = -2864.176302 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.31312 -39.41655 -37.83253 -35.72150 -33.45560 -32.70711 -29.80898 -29.11208 -27.93472 -25.73067 -24.10614 -22.39551 -21.96862 -20.82642 -20.51325 -18.79855 -17.99234 -17.33650 -17.11202 -16.55725 -16.35926 -15.56250 -15.33962 -15.00847 -14.48625 -14.32327 -14.14309 -13.97849 -13.75735 -13.06126 -12.82450 -12.70238 -12.58447 -12.49719 -12.26345 -12.20429 -12.10810 -11.99041 -11.96624 -11.79994 -10.97033 -10.83236 -10.67736 -10.51370 -10.07204 -8.85223 -7.86411 -5.37001 1.45012 1.47478 1.55439 1.62427 2.17075 2.51578 2.68343 3.27522 3.44208 3.70244 3.78901 3.84554 4.11271 4.19789 4.21032 4.27555 4.33334 4.45830 4.52641 4.63789 4.66867 4.75044 4.80287 4.93347 5.02650 5.03858 5.12945 5.14420 5.20619 5.30702 5.35763 5.43753 5.50872 5.60645 5.67884 6.29486 6.60612 7.11226 7.29097 7.81707 8.24494 9.16719 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.037672 B = 0.003841 C = 0.003689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.081972 B = 7287.180909 C = 7588.257695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.174 3.826 2 N -0.617 5.617 3 C -0.269 4.269 4 H 0.069 0.931 5 C -0.050 4.050 6 N -0.936 5.936 7 Si 0.968 3.032 8 H -0.289 1.289 9 H -0.291 1.291 10 H -0.268 1.268 11 C 0.148 3.852 12 C 0.114 3.886 13 N -0.709 5.709 14 C 0.511 3.489 15 O -0.594 6.594 16 C -0.103 4.103 17 H 0.132 0.868 18 C -0.083 4.083 19 C -0.163 4.163 20 H 0.127 0.873 21 C -0.162 4.162 22 C -0.160 4.160 23 H 0.136 0.864 24 C -0.085 4.085 25 H 0.013 0.987 26 H 0.012 0.988 27 H 0.031 0.969 28 H 0.250 0.750 29 H 0.066 0.934 30 H 0.060 0.940 31 H 0.035 0.965 32 H 0.041 0.959 33 H 0.416 0.584 34 H 0.075 0.925 35 H 0.052 0.948 36 H 0.117 0.883 37 H 0.078 0.922 38 H 0.053 0.947 39 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.275 -19.666 -4.685 23.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.340 5.340 3 C -0.399 4.399 4 H 0.087 0.913 5 C -0.245 4.245 6 N -0.582 5.582 7 Si 0.796 3.204 8 H -0.216 1.216 9 H -0.217 1.217 10 H -0.192 1.192 11 C 0.021 3.979 12 C -0.013 4.013 13 N -0.362 5.362 14 C 0.299 3.701 15 O -0.475 6.475 16 C -0.124 4.124 17 H 0.149 0.851 18 C -0.121 4.121 19 C -0.181 4.181 20 H 0.145 0.855 21 C -0.199 4.199 22 C -0.177 4.177 23 H 0.154 0.846 24 C -0.122 4.122 25 H 0.031 0.969 26 H 0.031 0.969 27 H 0.049 0.951 28 H 0.059 0.941 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.053 0.947 32 H 0.060 0.940 33 H 0.253 0.747 34 H 0.094 0.906 35 H 0.070 0.930 36 H 0.135 0.865 37 H 0.096 0.904 38 H 0.072 0.928 39 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 10.932 -19.144 -5.310 22.676 hybrid contribution -0.057 1.284 0.041 1.285 sum 10.875 -17.861 -5.269 21.565 Atomic orbital electron populations 1.20598 0.82585 0.95944 0.98008 1.44029 1.02253 1.01598 1.86160 1.19506 0.98537 0.86868 1.35020 0.91291 1.25783 0.98575 1.01859 0.98280 1.70221 1.20694 1.27750 1.39520 0.85255 0.78497 0.79808 0.76826 1.21601 1.21728 1.19234 1.20951 0.96890 0.87597 0.92495 1.21845 0.94718 0.84310 1.00398 1.45891 1.57473 1.23571 1.09216 1.21266 0.78597 0.87239 0.83031 1.90677 1.56630 1.66884 1.33268 1.22544 0.97172 0.93191 0.99538 0.85057 1.21796 0.97519 0.98193 0.94603 1.23253 0.91181 1.00142 1.03505 0.85470 1.23541 0.95679 1.01902 0.98772 1.23674 1.03449 1.00540 0.90076 0.84617 1.21920 0.90977 0.97604 1.01728 0.96915 0.96868 0.95071 0.94120 0.91554 0.92201 0.94672 0.94016 0.74678 0.90632 0.92973 0.86526 0.90350 0.92829 0.87977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 8.67 8.98 127.77 1.15 9.82 16 2 N -0.62 -31.02 2.92 -726.93 -2.12 -33.14 16 3 C -0.27 -14.93 9.65 84.03 0.81 -14.12 16 4 H 0.07 3.74 7.86 -2.91 -0.02 3.71 16 5 C -0.05 -2.80 5.10 84.86 0.43 -2.37 16 6 N -0.94 -55.55 10.71 21.65 0.23 -55.32 16 7 Si 0.97 45.60 29.57 68.60 2.03 47.63 16 8 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 9 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 10 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 11 C 0.15 5.65 5.76 86.38 0.50 6.15 16 12 C 0.11 4.19 6.00 86.38 0.52 4.70 16 13 N -0.71 -19.38 5.56 -463.07 -2.57 -21.95 16 14 C 0.51 14.93 7.13 87.66 0.63 15.55 16 15 O -0.59 -23.56 15.72 -3.03 -0.05 -23.61 16 16 C -0.10 -2.00 3.29 -10.25 -0.03 -2.04 16 17 H 0.13 1.83 8.14 -2.38 -0.02 1.81 16 18 C -0.08 -1.72 5.70 31.67 0.18 -1.54 16 19 C -0.16 -2.46 6.85 -10.07 -0.07 -2.53 16 20 H 0.13 1.49 8.14 -2.39 -0.02 1.47 16 21 C -0.16 -2.40 10.21 31.45 0.32 -2.08 16 22 C -0.16 -2.16 7.04 -9.22 -0.06 -2.22 16 23 H 0.14 1.28 8.14 -2.39 -0.02 1.26 16 24 C -0.08 -1.37 6.08 31.67 0.19 -1.18 16 25 H 0.01 0.68 7.34 -2.39 -0.02 0.66 16 26 H 0.01 0.69 7.34 -2.39 -0.02 0.68 16 27 H 0.03 1.32 8.03 -2.38 -0.02 1.30 16 28 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 29 H 0.07 2.22 8.07 -2.39 -0.02 2.20 16 30 H 0.06 2.21 8.04 -2.38 -0.02 2.19 16 31 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.04 1.67 8.14 -2.38 -0.02 1.65 16 33 H 0.42 8.10 8.47 -92.70 -0.79 7.31 16 34 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.05 1.39 7.43 -2.39 -0.02 1.37 16 36 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.05 1.10 8.04 -2.39 -0.02 1.08 16 39 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -70.61 319.81 2.31 -68.30 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: 0.24 Total: 9.95 kcal Atomic # 6 Polarization: 3.59 SS G_CDS: 4.56 Total: 8.15 kcal Atomic # 7 Polarization: -105.95 SS G_CDS: -4.46 Total: -110.41 kcal Atomic # 8 Polarization: -23.56 SS G_CDS: -0.05 Total: -23.61 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.63 kcal Total: -70.61 2.31 -68.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317457205.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.490 kcal (2) G-P(sol) polarization free energy of solvation -70.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds