Wall clock time and date at job start Sun Mar 29 2020 23:20:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34775 * 120.00385 * 2 1 4 4 O 1.21280 * 120.00492 * 180.02562 * 3 2 1 5 5 C 1.50709 * 119.99687 * 0.02562 * 3 2 1 6 6 C 1.52994 * 109.47167 * 179.97438 * 5 3 2 7 7 C 1.52998 * 109.47360 * 179.97438 * 6 5 3 8 8 C 1.52998 * 117.50300 * 243.74911 * 7 6 5 9 9 C 1.52998 * 117.49973 * 175.08669 * 7 6 5 10 10 C 1.46499 * 119.99937 * 180.02562 * 2 1 3 11 11 C 1.53499 * 114.20527 * 59.99818 * 10 2 1 12 12 N 1.47066 * 87.98642 * 220.14732 * 11 10 2 13 13 C 1.36935 * 136.05905 * 207.08539 * 12 11 10 14 14 H 1.07996 * 120.00461 * 6.76058 * 13 12 11 15 15 C 1.38816 * 119.99877 * 186.76278 * 13 12 11 16 16 N 1.31618 * 119.99884 * 172.25761 * 15 13 12 17 17 Si 1.86798 * 120.00153 * 352.25282 * 15 13 12 18 18 H 1.48497 * 109.47359 * 175.36223 * 17 15 13 19 19 H 1.48503 * 109.47030 * 295.36478 * 17 15 13 20 20 H 1.48505 * 109.46945 * 55.36328 * 17 15 13 21 21 C 1.47070 * 87.88468 * 27.34150 * 12 11 10 22 22 H 1.09003 * 109.46861 * 269.99563 * 1 2 3 23 23 H 1.08999 * 109.47091 * 29.99510 * 1 2 3 24 24 H 1.08998 * 109.47582 * 149.99539 * 1 2 3 25 25 H 1.08997 * 109.46845 * 299.99691 * 5 3 2 26 26 H 1.08999 * 109.47327 * 59.99287 * 5 3 2 27 27 H 1.09006 * 109.47280 * 300.00471 * 6 5 3 28 28 H 1.09008 * 109.47151 * 59.99904 * 6 5 3 29 29 H 1.08998 * 115.54694 * 29.42207 * 7 6 5 30 30 H 1.09003 * 117.49724 * 359.97438 * 8 7 6 31 31 H 1.08997 * 117.50169 * 145.02027 * 8 7 6 32 32 H 1.08999 * 117.49926 * 214.98777 * 9 7 6 33 33 H 1.09004 * 117.50091 * 0.02562 * 9 7 6 34 34 H 1.08993 * 113.28511 * 193.06317 * 10 2 1 35 35 H 1.09001 * 113.46838 * 105.36625 * 11 10 2 36 36 H 1.08996 * 113.52140 * 334.93417 * 11 10 2 37 37 H 0.97004 * 120.00412 * 4.87236 * 16 15 13 38 38 H 1.09004 * 113.46535 * 87.44030 * 21 12 11 39 39 H 1.08996 * 113.46991 * 217.87726 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3517 1.1672 -0.0005 5 6 1.3854 2.4723 0.0006 6 6 2.3796 3.6352 0.0011 7 6 1.6147 4.9602 0.0011 8 6 1.7817 5.8724 -1.2159 9 6 2.4325 6.2481 0.1178 10 6 2.1975 -1.2687 -0.0006 11 6 1.9059 -2.1632 -1.2134 12 7 1.9168 -3.3161 -0.3004 13 6 2.1883 -4.6542 -0.4050 14 1 2.5822 -5.0548 -1.3272 15 6 1.9570 -5.4957 0.6745 16 7 2.0717 -6.7989 0.5294 17 14 1.4834 -4.7788 2.3331 18 1 1.1844 -5.8813 3.2819 19 1 2.6078 -3.9640 2.8595 20 1 0.2813 -3.9209 2.1765 21 6 1.5015 -2.4006 0.7731 22 1 -0.3633 -0.0001 1.0277 23 1 -0.3633 0.8900 -0.5138 24 1 -0.3634 -0.8899 -0.5139 25 1 0.7585 2.5302 -0.8892 26 1 0.7590 2.5299 0.8907 27 1 3.0064 3.5770 0.8911 28 1 3.0063 3.5778 -0.8890 29 1 0.6377 4.9390 0.4838 30 1 2.4369 5.5287 -2.0163 31 1 0.9147 6.4516 -1.5335 32 1 1.9933 7.0742 0.6770 33 1 3.5155 6.1514 0.1942 34 1 3.2575 -1.1543 0.2258 35 1 2.7143 -2.1807 -1.9443 36 1 0.9321 -1.9778 -1.6666 37 1 2.3859 -7.1676 -0.3110 38 1 0.4208 -2.2771 0.8443 39 1 1.9654 -2.6203 1.7346 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323908635.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:20:41 Heat of formation + Delta-G solvation = 49.285778 kcal Electronic energy + Delta-G solvation = -18543.348179 eV Core-core repulsion = 15682.037972 eV Total energy + Delta-G solvation = -2861.310207 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.13725 -38.37868 -37.52060 -34.68262 -32.52886 -31.99934 -28.13416 -26.83413 -25.42646 -25.26181 -22.64958 -22.35333 -20.64277 -19.78338 -18.74411 -17.56586 -16.98512 -16.22063 -16.06950 -15.54669 -15.22907 -14.37712 -14.30381 -13.63725 -13.45145 -13.17173 -12.81095 -12.55461 -12.14939 -12.07149 -11.93146 -11.83986 -11.65481 -11.46536 -11.37420 -11.24214 -10.55222 -10.53433 -10.42513 -10.10775 -9.64684 -9.40537 -9.24070 -8.88963 -8.29884 -7.19171 -6.35880 -3.27096 2.74494 3.09867 3.38253 3.42625 3.54433 3.62909 4.33405 4.56267 4.59567 4.67716 4.69416 4.79567 4.97070 5.07529 5.11402 5.16973 5.28917 5.37739 5.39109 5.45766 5.55787 5.64368 5.67525 5.75620 5.82663 5.84699 5.87070 5.95192 6.14071 6.17736 6.20771 6.34754 6.48601 6.95166 7.04242 7.57498 8.20498 8.31713 8.93989 9.45688 10.30559 11.16915 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.052042 B = 0.004073 C = 0.004005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.900355 B = 6872.271374 C = 6989.898487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.603 5.603 3 C 0.510 3.490 4 O -0.545 6.545 5 C -0.135 4.135 6 C -0.075 4.075 7 C -0.153 4.153 8 C -0.183 4.183 9 C -0.182 4.182 10 C 0.099 3.901 11 C 0.112 3.888 12 N -0.621 5.621 13 C -0.305 4.305 14 H 0.085 0.915 15 C -0.024 4.024 16 N -0.932 5.932 17 Si 1.071 2.929 18 H -0.294 1.294 19 H -0.293 1.293 20 H -0.287 1.287 21 C 0.091 3.909 22 H 0.057 0.943 23 H 0.070 0.930 24 H 0.078 0.922 25 H 0.093 0.907 26 H 0.092 0.908 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.104 0.896 30 H 0.094 0.906 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.094 0.906 34 H 0.124 0.876 35 H 0.048 0.952 36 H 0.040 0.960 37 H 0.261 0.739 38 H 0.050 0.950 39 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.241 23.986 -0.809 24.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.336 5.336 3 C 0.298 3.702 4 O -0.422 6.422 5 C -0.175 4.175 6 C -0.112 4.112 7 C -0.171 4.171 8 C -0.220 4.220 9 C -0.219 4.219 10 C -0.005 4.005 11 C -0.016 4.016 12 N -0.350 5.350 13 C -0.431 4.431 14 H 0.102 0.898 15 C -0.222 4.222 16 N -0.574 5.574 17 Si 0.904 3.096 18 H -0.221 1.221 19 H -0.221 1.221 20 H -0.214 1.214 21 C -0.035 4.035 22 H 0.076 0.924 23 H 0.088 0.912 24 H 0.097 0.903 25 H 0.111 0.889 26 H 0.110 0.890 27 H 0.092 0.908 28 H 0.090 0.910 29 H 0.122 0.878 30 H 0.113 0.887 31 H 0.110 0.890 32 H 0.111 0.889 33 H 0.113 0.887 34 H 0.142 0.858 35 H 0.067 0.933 36 H 0.057 0.943 37 H 0.072 0.928 38 H 0.067 0.933 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.984 23.270 0.701 23.808 hybrid contribution 0.201 0.329 -1.655 1.700 sum -4.783 23.598 -0.955 24.097 Atomic orbital electron populations 1.21838 0.79759 1.03312 1.02019 1.47954 1.06937 1.06090 1.72581 1.20735 0.88119 0.85396 0.75918 1.90685 1.14097 1.87485 1.49939 1.21682 0.99450 0.92190 1.04176 1.20934 0.96596 0.90091 1.03612 1.22362 1.00685 0.91453 1.02582 1.23064 1.03195 1.03856 0.91836 1.22972 0.99709 0.98573 1.00653 1.23581 0.97836 0.79951 0.99113 1.22745 0.98696 0.86320 0.93849 1.45695 1.79829 1.04093 1.05346 1.20122 1.42071 0.79273 1.01630 0.89751 1.25762 0.99713 0.94324 1.02449 1.70921 1.47627 1.09781 1.29059 0.83681 0.76206 0.73854 0.75863 1.22106 1.22073 1.21418 1.23178 0.97733 0.88219 0.94398 0.92413 0.91150 0.90322 0.88902 0.88975 0.90788 0.91046 0.87769 0.88734 0.89011 0.88949 0.88724 0.85839 0.93332 0.94286 0.92839 0.93293 0.92825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.81 8.92 59.85 0.53 1.35 16 2 N -0.60 -8.95 3.11 -173.55 -0.54 -9.49 16 3 C 0.51 7.44 7.67 -10.98 -0.08 7.35 16 4 O -0.54 -10.08 15.49 5.56 0.09 -10.00 16 5 C -0.14 -1.32 4.21 -27.88 -0.12 -1.43 16 6 C -0.07 -0.74 4.78 -26.74 -0.13 -0.87 16 7 C -0.15 -1.21 5.73 -90.62 -0.52 -1.73 16 8 C -0.18 -1.36 10.18 -26.69 -0.27 -1.63 16 9 C -0.18 -1.37 10.25 -26.69 -0.27 -1.65 16 10 C 0.10 1.86 4.57 -67.67 -0.31 1.56 16 11 C 0.11 2.27 8.24 -8.50 -0.07 2.20 16 12 N -0.62 -15.53 3.70 -184.61 -0.68 -16.22 16 13 C -0.30 -8.91 11.08 -15.06 -0.17 -9.07 16 14 H 0.08 2.59 8.05 -52.49 -0.42 2.16 16 15 C -0.02 -0.71 5.50 -17.43 -0.10 -0.80 16 16 N -0.93 -29.58 13.70 55.49 0.76 -28.82 16 17 Si 1.07 26.94 25.13 -169.99 -4.27 22.67 16 18 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 19 H -0.29 -7.07 6.65 56.52 0.38 -6.69 16 20 H -0.29 -6.61 6.13 56.52 0.35 -6.27 16 21 C 0.09 1.94 5.13 -8.37 -0.04 1.89 16 22 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.07 0.55 6.44 -51.93 -0.33 0.22 16 24 H 0.08 0.94 6.17 -51.93 -0.32 0.62 16 25 H 0.09 0.75 7.40 -51.93 -0.38 0.36 16 26 H 0.09 0.73 8.11 -51.93 -0.42 0.31 16 27 H 0.07 0.83 8.10 -51.93 -0.42 0.41 16 28 H 0.07 0.80 7.83 -51.92 -0.41 0.39 16 29 H 0.10 0.72 8.08 -51.93 -0.42 0.30 16 30 H 0.09 0.72 8.03 -51.93 -0.42 0.31 16 31 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.12 2.53 7.29 -51.93 -0.38 2.15 16 35 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.04 0.74 6.97 -51.93 -0.36 0.37 16 37 H 0.26 8.19 8.73 -40.82 -0.36 7.83 16 38 H 0.05 0.98 6.16 -51.93 -0.32 0.66 16 39 H 0.05 1.20 4.65 -51.93 -0.24 0.96 16 LS Contribution 310.02 15.07 4.67 4.67 Total: -1.00 -33.92 310.02 -7.72 -41.64 By element: Atomic # 1 Polarization: 4.59 SS G_CDS: -6.19 Total: -1.60 kcal Atomic # 6 Polarization: -1.30 SS G_CDS: -1.55 Total: -2.85 kcal Atomic # 7 Polarization: -54.06 SS G_CDS: -0.46 Total: -54.53 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: 0.09 Total: -10.00 kcal Atomic # 14 Polarization: 26.94 SS G_CDS: -4.27 Total: 22.67 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -33.92 -7.72 -41.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323908635.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.922 kcal (2) G-P(sol) polarization free energy of solvation -33.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.637 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds