Wall clock time and date at job start Sun Mar 29 2020 23:20:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50698 * 119.99910 * 2 1 4 4 C 1.52998 * 109.47454 * 124.99769 * 3 2 1 5 5 C 1.53003 * 109.47393 * 180.02562 * 4 3 2 6 6 C 1.50697 * 109.47205 * 179.97438 * 5 4 3 7 7 O 1.21290 * 120.00131 * 0.02562 * 6 5 4 8 8 N 1.34774 * 119.99991 * 179.97438 * 6 5 4 9 9 C 1.46502 * 120.00068 * 0.02562 * 8 6 5 10 10 C 1.46498 * 120.00146 * 180.02562 * 8 6 5 11 11 C 1.53496 * 114.21138 * 119.99825 * 10 8 6 12 12 N 1.47070 * 87.98076 * 87.71671 * 11 10 8 13 13 C 1.36941 * 136.05440 * 207.08124 * 12 11 10 14 14 H 1.07997 * 120.00412 * 7.86028 * 13 12 11 15 15 C 1.38814 * 119.99634 * 187.85423 * 13 12 11 16 16 N 1.31616 * 119.99939 * 173.06607 * 15 13 12 17 17 Si 1.86796 * 120.00336 * 353.06587 * 15 13 12 18 18 H 1.48499 * 109.47209 * 175.20930 * 17 15 13 19 19 H 1.48510 * 109.47106 * 295.21158 * 17 15 13 20 20 H 1.48503 * 109.47106 * 55.20691 * 17 15 13 21 21 C 1.47063 * 87.88519 * 27.34830 * 12 11 10 22 22 H 1.08003 * 119.99721 * 180.02562 * 1 2 3 23 23 H 1.08000 * 120.00631 * 0.02562 * 1 2 3 24 24 H 1.07996 * 120.00084 * 179.97438 * 2 1 3 25 25 H 1.09001 * 109.47090 * 4.99876 * 3 2 1 26 26 H 1.09000 * 109.47185 * 245.00173 * 3 2 1 27 27 H 1.09003 * 109.47393 * 60.00006 * 4 3 2 28 28 H 1.09007 * 109.47093 * 299.99984 * 4 3 2 29 29 H 1.09003 * 109.46933 * 59.99618 * 5 4 3 30 30 H 1.09000 * 109.46527 * 299.99870 * 5 4 3 31 31 H 1.08993 * 109.47136 * 270.00131 * 9 8 6 32 32 H 1.08998 * 109.46845 * 29.99973 * 9 8 6 33 33 H 1.09001 * 109.46872 * 149.99989 * 9 8 6 34 34 H 1.09007 * 113.27923 * 346.93027 * 10 8 6 35 35 H 1.09000 * 113.46265 * 332.94223 * 11 10 8 36 36 H 1.08991 * 113.52116 * 202.50467 * 11 10 8 37 37 H 0.97007 * 119.99810 * 1.51422 * 16 15 13 38 38 H 1.08997 * 113.47359 * 87.43609 * 21 12 11 39 39 H 1.09003 * 113.46485 * 217.88067 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0349 1.3332 1.1816 5 6 3.7995 2.6585 1.1820 6 6 4.7559 2.6864 2.3462 7 8 4.8201 1.7393 3.1011 8 7 5.5406 3.7634 2.5480 9 6 5.4635 4.9072 1.6358 10 6 6.4708 3.7903 3.6794 11 6 7.9447 3.9438 3.2791 12 7 7.7474 5.4009 3.3100 13 6 8.3113 6.4855 2.6929 14 1 9.0233 6.3424 1.8936 15 6 7.9676 7.7690 3.0948 16 7 8.6071 8.8072 2.5991 17 14 6.5977 8.0229 4.3390 18 1 6.5045 9.4639 4.6855 19 1 5.3092 7.5696 3.7561 20 1 6.8902 7.2369 5.5646 21 6 6.6826 5.1809 4.3003 22 1 -0.5400 -0.9354 0.0004 23 1 -0.5401 0.9352 -0.0004 24 1 1.8500 -0.9353 0.0004 25 1 1.3585 2.1316 0.0895 26 1 2.6212 1.4026 -0.9314 27 1 3.7399 0.5067 1.0922 28 1 2.4771 1.2357 2.1131 29 1 3.0942 3.4848 1.2717 30 1 4.3572 2.7564 0.2506 31 1 6.1734 4.7700 0.8202 32 1 4.4543 4.9812 1.2306 33 1 5.7052 5.8213 2.1781 34 1 6.2855 3.0013 4.4084 35 1 8.1669 3.5569 2.2846 36 1 8.6409 3.5839 4.0365 37 1 9.3035 8.6767 1.9366 38 1 7.0454 5.1470 5.3276 39 1 5.8295 5.8479 4.1757 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323970332.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:20:43 Heat of formation + Delta-G solvation = 24.130682 kcal Electronic energy + Delta-G solvation = -18769.526048 eV Core-core repulsion = 15907.125034 eV Total energy + Delta-G solvation = -2862.401014 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.50529 -39.67021 -36.83246 -35.71159 -34.45264 -33.17706 -30.21563 -28.22342 -27.64515 -26.97778 -24.61251 -23.06917 -21.38594 -20.67809 -19.95970 -19.27735 -18.17587 -17.61385 -17.10308 -16.44030 -16.12004 -15.76513 -15.59075 -15.18172 -15.02618 -14.42332 -14.17572 -14.00493 -13.52678 -13.30862 -13.17943 -12.94810 -12.61429 -12.52175 -12.43841 -12.40044 -12.12944 -11.71482 -11.59874 -11.32419 -11.15223 -11.00848 -10.80133 -10.16110 -9.58837 -9.18413 -8.62318 -5.44817 1.39257 1.44628 1.48195 1.60552 1.67679 1.99839 2.54490 2.92827 3.24913 3.53697 3.64973 3.88114 4.06472 4.21345 4.30372 4.31670 4.34865 4.41507 4.55960 4.62275 4.64938 4.69607 4.72902 4.76609 4.79460 4.91336 4.96646 5.09956 5.13648 5.19754 5.25744 5.42379 5.58826 5.81347 5.94208 5.96194 6.48475 6.71352 7.16457 7.33596 8.28274 8.92969 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.036234 B = 0.004573 C = 0.004410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.573921 B = 6121.957785 C = 6347.673506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.165 4.165 3 C -0.090 4.090 4 C -0.092 4.092 5 C -0.132 4.132 6 C 0.510 3.490 7 O -0.583 6.583 8 N -0.589 5.589 9 C 0.087 3.913 10 C 0.114 3.886 11 C 0.109 3.891 12 N -0.648 5.648 13 C -0.281 4.281 14 H 0.049 0.951 15 C -0.078 4.078 16 N -0.971 5.971 17 Si 1.102 2.898 18 H -0.309 1.309 19 H -0.264 1.264 20 H -0.265 1.265 21 C 0.084 3.916 22 H 0.103 0.897 23 H 0.102 0.898 24 H 0.108 0.892 25 H 0.077 0.923 26 H 0.083 0.917 27 H 0.057 0.943 28 H 0.055 0.945 29 H 0.115 0.885 30 H 0.111 0.889 31 H 0.048 0.952 32 H 0.098 0.902 33 H 0.061 0.939 34 H 0.118 0.882 35 H 0.042 0.958 36 H 0.063 0.937 37 H 0.246 0.754 38 H 0.069 0.931 39 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.386 -14.632 -4.007 21.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.183 4.183 3 C -0.127 4.127 4 C -0.130 4.130 5 C -0.172 4.172 6 C 0.301 3.699 7 O -0.463 6.463 8 N -0.320 5.320 9 C -0.056 4.056 10 C 0.008 3.992 11 C -0.017 4.017 12 N -0.377 5.377 13 C -0.408 4.408 14 H 0.067 0.933 15 C -0.271 4.271 16 N -0.617 5.617 17 Si 0.929 3.071 18 H -0.237 1.237 19 H -0.191 1.191 20 H -0.191 1.191 21 C -0.041 4.041 22 H 0.121 0.879 23 H 0.120 0.880 24 H 0.126 0.874 25 H 0.095 0.905 26 H 0.101 0.899 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.133 0.867 30 H 0.130 0.870 31 H 0.067 0.933 32 H 0.117 0.883 33 H 0.079 0.921 34 H 0.136 0.864 35 H 0.060 0.940 36 H 0.081 0.919 37 H 0.056 0.944 38 H 0.087 0.913 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -16.062 -13.786 -2.913 21.366 hybrid contribution 1.841 -0.728 -0.967 2.203 sum -14.221 -14.514 -3.880 20.687 Atomic orbital electron populations 1.24014 0.95913 1.02519 1.01071 1.23075 0.96414 0.98831 0.99992 1.20765 0.97980 0.95717 0.98283 1.21206 0.97497 0.95633 0.98696 1.21786 0.97763 1.01330 0.96285 1.21438 0.80746 0.80743 0.86992 1.90641 1.70074 1.36302 1.49319 1.47569 1.38455 1.18109 1.27896 1.21826 1.02330 0.88420 0.92980 1.22289 0.89758 0.97805 0.89354 1.22940 0.95255 0.84000 0.99532 1.46109 1.41631 1.02515 1.47458 1.19876 1.22027 0.85056 1.13879 0.93281 1.26892 1.04958 0.90577 1.04630 1.71028 1.26547 1.31683 1.32430 0.83358 0.74146 0.74385 0.75209 1.23704 1.19051 1.19087 1.23343 0.91648 0.94731 0.94393 0.87876 0.87993 0.87433 0.90454 0.89896 0.92446 0.92576 0.86668 0.87042 0.93315 0.88336 0.92053 0.86393 0.93955 0.91929 0.94434 0.91313 0.92713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.73 14.32 67.78 0.97 -1.76 16 2 C -0.17 -2.51 9.52 25.65 0.24 -2.27 16 3 C -0.09 -1.31 5.66 29.85 0.17 -1.14 16 4 C -0.09 -1.77 4.49 30.59 0.14 -1.63 16 5 C -0.13 -2.58 4.25 29.85 0.13 -2.45 16 6 C 0.51 14.86 7.67 87.66 0.67 15.53 16 7 O -0.58 -20.63 15.49 -3.06 -0.05 -20.68 16 8 N -0.59 -18.65 3.12 -821.41 -2.56 -21.21 16 9 C 0.09 2.66 9.35 127.77 1.19 3.86 16 10 C 0.11 3.92 4.67 45.55 0.21 4.14 16 11 C 0.11 4.18 8.31 83.18 0.69 4.87 16 12 N -0.65 -29.77 2.40 -738.04 -1.77 -31.55 16 13 C -0.28 -15.60 10.70 84.03 0.90 -14.70 16 14 H 0.05 2.99 8.05 -2.91 -0.02 2.96 16 15 C -0.08 -4.52 5.50 84.86 0.47 -4.05 16 16 N -0.97 -61.28 13.71 21.65 0.30 -60.99 16 17 Si 1.10 51.42 24.77 68.60 1.70 53.12 16 18 H -0.31 -15.04 7.11 99.48 0.71 -14.34 16 19 H -0.26 -10.95 6.53 99.48 0.65 -10.30 16 20 H -0.27 -11.33 6.16 99.48 0.61 -10.71 16 21 C 0.08 3.28 4.73 83.27 0.39 3.67 16 22 H 0.10 1.21 8.06 -2.91 -0.02 1.19 16 23 H 0.10 1.25 7.84 -2.91 -0.02 1.23 16 24 H 0.11 1.60 8.06 -2.91 -0.02 1.57 16 25 H 0.08 0.98 7.79 -2.39 -0.02 0.96 16 26 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.06 1.25 8.10 -2.39 -0.02 1.23 16 28 H 0.06 1.23 8.10 -2.38 -0.02 1.22 16 29 H 0.12 1.78 7.40 -2.39 -0.02 1.76 16 30 H 0.11 1.82 8.11 -2.39 -0.02 1.80 16 31 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.10 2.17 6.44 -2.39 -0.02 2.15 16 33 H 0.06 2.34 4.97 -2.39 -0.01 2.33 16 34 H 0.12 3.84 7.29 -2.38 -0.02 3.82 16 35 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 37 H 0.25 15.66 8.73 -92.70 -0.81 14.85 16 38 H 0.07 2.55 7.67 -2.39 -0.02 2.54 16 39 H 0.06 2.16 3.90 -2.39 -0.01 2.15 16 Total: -1.00 -69.06 311.51 4.61 -64.45 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: 0.82 Total: 12.79 kcal Atomic # 6 Polarization: -2.11 SS G_CDS: 6.18 Total: 4.07 kcal Atomic # 7 Polarization: -109.71 SS G_CDS: -4.04 Total: -113.75 kcal Atomic # 8 Polarization: -20.63 SS G_CDS: -0.05 Total: -20.68 kcal Atomic # 14 Polarization: 51.42 SS G_CDS: 1.70 Total: 53.12 kcal Total: -69.06 4.61 -64.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323970332.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.576 kcal (2) G-P(sol) polarization free energy of solvation -69.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds