Wall clock time and date at job start Sun Mar 29 2020 23:41:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52991 * 109.47408 * 2 1 4 4 C 1.53007 * 109.47008 * 239.99480 * 2 1 3 5 5 C 1.53000 * 109.46602 * 120.00206 * 2 1 3 6 6 N 1.46899 * 109.47341 * 35.41893 * 5 2 1 7 7 C 1.46897 * 111.00159 * 287.42307 * 6 5 2 8 8 C 1.50698 * 109.47049 * 313.36818 * 7 6 5 9 9 H 1.07999 * 120.00470 * 4.77659 * 8 7 6 10 10 C 1.37884 * 119.99878 * 184.78587 * 8 7 6 11 11 N 1.31515 * 119.99831 * 359.97438 * 10 8 7 12 12 Si 1.86801 * 119.99784 * 179.97438 * 10 8 7 13 13 H 1.48493 * 109.47410 * 359.97438 * 12 10 8 14 14 H 1.48500 * 109.47093 * 119.99612 * 12 10 8 15 15 H 1.48502 * 109.46847 * 239.99513 * 12 10 8 16 16 C 1.46902 * 111.00088 * 51.38252 * 6 5 2 17 17 C 1.50696 * 109.47488 * 65.58023 * 16 6 5 18 18 N 1.33239 * 125.53000 * 269.69556 * 17 16 6 19 19 C 1.30826 * 109.83321 * 180.26337 * 18 17 16 20 20 N 1.34428 * 108.07755 * 359.97438 * 19 18 17 21 21 H 0.97005 * 126.82222 * 180.02562 * 20 19 18 22 22 N 1.30712 * 125.52523 * 89.99875 * 17 16 6 23 23 H 1.08999 * 109.47066 * 299.20664 * 1 2 3 24 24 H 1.09007 * 109.46924 * 59.20123 * 1 2 3 25 25 H 1.09001 * 109.47762 * 179.20039 * 1 2 3 26 26 H 1.08998 * 109.47058 * 180.02562 * 3 2 1 27 27 H 1.08995 * 109.47005 * 299.99861 * 3 2 1 28 28 H 1.09000 * 109.47025 * 60.00011 * 3 2 1 29 29 H 1.08997 * 109.47442 * 317.58577 * 4 2 1 30 30 H 1.09004 * 109.46502 * 77.57835 * 4 2 1 31 31 H 1.08991 * 109.47201 * 197.57898 * 4 2 1 32 32 H 1.08996 * 109.46970 * 275.41573 * 5 2 1 33 33 H 1.09003 * 109.46874 * 155.42122 * 5 2 1 34 34 H 1.08998 * 109.46714 * 73.35832 * 7 6 5 35 35 H 1.08997 * 109.47793 * 193.36123 * 7 6 5 36 36 H 0.97003 * 119.99780 * 180.02562 * 11 10 8 37 37 H 1.09000 * 109.46772 * 305.58186 * 16 6 5 38 38 H 1.08998 * 109.46746 * 185.58298 * 16 6 5 39 39 H 1.08002 * 125.95999 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 2.0399 -0.7213 1.2493 6 7 1.1389 -1.8354 1.5735 7 6 -0.1331 -1.3423 2.1181 8 6 0.1416 -0.2956 3.1669 9 1 1.1541 0.0320 3.3508 10 6 -0.8999 0.2438 3.8919 11 7 -2.1329 -0.1548 3.6678 12 14 -0.5593 1.5408 5.1924 13 1 0.8994 1.8128 5.2502 14 1 -1.2829 2.7905 4.8466 15 1 -1.0236 1.0497 6.5147 16 6 0.9134 -2.6889 0.3993 17 6 2.2052 -3.3609 0.0111 18 7 3.1040 -2.8754 -0.8442 19 6 4.1042 -3.7108 -0.9589 20 7 3.8593 -4.7663 -0.1632 21 1 4.4243 -5.5453 -0.0404 22 7 2.6229 -4.5173 0.4547 23 1 -0.3633 0.5015 0.8970 24 1 -0.3633 0.5262 -0.8828 25 1 -0.3635 -1.0275 -0.0143 26 1 3.1300 1.4423 -0.0005 27 1 1.6768 1.9562 -0.8900 28 1 1.6767 1.9562 0.8900 29 1 1.4458 -1.6194 -1.4183 30 1 1.9527 -0.0603 -2.1115 31 1 3.0847 -0.9982 -1.1079 32 1 2.0695 -0.0228 2.0854 33 1 3.0421 -1.1071 1.0624 34 1 -0.7269 -0.9052 1.3154 35 1 -0.6819 -2.1706 2.5664 36 1 -2.8656 0.2249 4.1776 37 1 0.5577 -2.0784 -0.4307 38 1 0.1674 -3.4466 0.6389 39 1 4.9747 -3.5760 -1.5837 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327511658.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:41:26 Heat of formation + Delta-G solvation = 162.281260 kcal Electronic energy + Delta-G solvation = -20063.998089 eV Core-core repulsion = 17239.880485 eV Total energy + Delta-G solvation = -2824.117604 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.92726 -39.15489 -33.70546 -33.01309 -32.03261 -30.95369 -28.22096 -27.63149 -26.10791 -25.67747 -23.93410 -22.48258 -20.72237 -19.57443 -18.37028 -17.95942 -16.41662 -15.57932 -15.30994 -14.75750 -14.53405 -14.01433 -13.80166 -13.56694 -12.81181 -12.62101 -12.07270 -12.05457 -11.58417 -11.23934 -11.16198 -10.97208 -10.80447 -10.70943 -10.57009 -10.40839 -10.07675 -10.02803 -9.76020 -9.64407 -9.47088 -9.35777 -8.95421 -8.77182 -8.38130 -6.77554 -5.98422 -3.96824 1.85617 2.87452 3.15774 3.33346 3.41407 3.45407 4.36549 4.48470 4.97722 5.14718 5.30170 5.40741 5.61292 5.69013 5.73551 6.08742 6.11110 6.29668 6.32920 6.37982 6.44168 6.49479 6.59762 6.63823 6.71257 6.76412 6.90228 6.98869 7.11632 7.17857 7.30607 7.39777 7.52931 7.57555 7.83966 8.15306 8.31492 8.39037 8.65398 9.09750 9.65128 11.12674 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.027379 B = 0.006971 C = 0.006280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.434856 B = 4015.616961 C = 4457.490130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.096 4.096 3 C -0.131 4.131 4 C -0.143 4.143 5 C 0.069 3.931 6 N -0.526 5.526 7 C 0.147 3.853 8 C -0.504 4.504 9 H 0.065 0.935 10 C 0.058 3.942 11 N -0.895 5.895 12 Si 0.891 3.109 13 H -0.273 1.273 14 H -0.285 1.285 15 H -0.285 1.285 16 C 0.110 3.890 17 C 0.254 3.746 18 N -0.524 5.524 19 C 0.240 3.760 20 N -0.494 5.494 21 H 0.435 0.565 22 N -0.306 5.306 23 H 0.093 0.907 24 H 0.028 0.972 25 H 0.069 0.931 26 H 0.044 0.956 27 H 0.042 0.958 28 H 0.055 0.945 29 H 0.062 0.938 30 H 0.023 0.977 31 H 0.085 0.915 32 H 0.090 0.910 33 H 0.047 0.953 34 H 0.046 0.954 35 H 0.027 0.973 36 H 0.259 0.741 37 H 0.091 0.909 38 H 0.082 0.918 39 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.997 -4.565 -10.791 16.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.098 4.098 3 C -0.189 4.189 4 C -0.199 4.199 5 C -0.059 4.059 6 N -0.250 5.250 7 C 0.023 3.977 8 C -0.543 4.543 9 H 0.083 0.917 10 C -0.143 4.143 11 N -0.535 5.535 12 Si 0.719 3.281 13 H -0.198 1.198 14 H -0.212 1.212 15 H -0.211 1.211 16 C -0.020 4.020 17 C -0.029 4.029 18 N -0.253 5.253 19 C -0.058 4.058 20 N -0.212 5.212 21 H 0.279 0.721 22 N -0.135 5.135 23 H 0.112 0.888 24 H 0.047 0.953 25 H 0.087 0.913 26 H 0.063 0.937 27 H 0.061 0.939 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.042 0.958 31 H 0.104 0.896 32 H 0.108 0.892 33 H 0.066 0.934 34 H 0.063 0.937 35 H 0.045 0.955 36 H 0.069 0.931 37 H 0.108 0.892 38 H 0.100 0.900 39 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 10.554 -4.922 -10.005 15.353 hybrid contribution 0.462 0.624 0.154 0.791 sum 11.017 -4.298 -9.852 15.391 Atomic orbital electron populations 1.22892 0.94922 1.02075 1.01976 1.21197 0.95929 0.95423 0.97245 1.21780 0.99757 0.96292 1.01071 1.22790 1.03680 0.98369 0.95098 1.22329 0.94655 0.92769 0.96147 1.62313 1.17675 1.19712 1.25277 1.20863 0.85392 0.95567 0.95846 1.21294 0.93417 1.20653 1.18892 0.91687 1.24933 0.95101 0.97123 0.97184 1.69965 0.98758 1.43291 1.41490 0.86555 0.78321 0.81487 0.81759 1.19794 1.21163 1.21146 1.21106 0.88037 0.96689 0.96198 1.24447 0.97302 0.89540 0.91611 1.71135 1.03058 1.28884 1.22248 1.26283 0.99927 0.84975 0.94652 1.48227 1.18113 1.19829 1.35012 0.72108 1.78100 0.95523 1.19842 1.20028 0.88832 0.95312 0.91273 0.93719 0.93882 0.92549 0.91974 0.95769 0.89640 0.89191 0.93449 0.93714 0.95526 0.93090 0.89173 0.90016 0.76962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.20 6.19 37.16 0.23 -2.97 16 2 C -0.10 -1.74 0.77 -154.51 -0.12 -1.86 16 3 C -0.13 -2.20 8.27 37.15 0.31 -1.89 16 4 C -0.14 -2.32 6.52 37.16 0.24 -2.08 16 5 C 0.07 1.41 4.56 -3.82 -0.02 1.39 16 6 N -0.53 -11.51 4.84 -237.53 -1.15 -12.66 16 7 C 0.15 3.70 4.18 -4.98 -0.02 3.68 16 8 C -0.50 -13.67 7.53 -34.44 -0.26 -13.92 16 9 H 0.07 1.77 5.60 -52.49 -0.29 1.47 16 10 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 11 N -0.90 -26.01 13.29 55.43 0.74 -25.27 16 12 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 13 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 14 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 15 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 16 C 0.11 2.09 4.50 -4.98 -0.02 2.07 16 17 C 0.25 4.43 6.39 -156.86 -1.00 3.42 16 18 N -0.52 -7.83 5.88 -11.98 -0.07 -7.90 16 19 C 0.24 2.59 13.13 -90.66 -1.19 1.40 16 20 N -0.49 -5.65 7.45 29.53 0.22 -5.43 16 21 H 0.43 3.17 8.96 -182.33 -1.63 1.54 16 22 N -0.31 -5.17 12.80 32.42 0.41 -4.75 16 23 H 0.09 2.16 5.70 -51.93 -0.30 1.87 16 24 H 0.03 0.51 8.14 -51.92 -0.42 0.09 16 25 H 0.07 1.39 3.33 -51.93 -0.17 1.21 16 26 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.06 1.01 8.12 -51.93 -0.42 0.59 16 29 H 0.06 1.05 4.04 -51.93 -0.21 0.84 16 30 H 0.02 0.37 8.02 -51.93 -0.42 -0.05 16 31 H 0.09 1.38 5.40 -51.93 -0.28 1.10 16 32 H 0.09 2.03 4.98 -51.93 -0.26 1.77 16 33 H 0.05 0.95 6.70 -51.93 -0.35 0.60 16 34 H 0.05 1.13 3.26 -58.91 -0.19 0.94 16 35 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 37 H 0.09 1.66 2.50 -51.93 -0.13 1.53 16 38 H 0.08 1.57 8.08 -51.93 -0.42 1.15 16 39 H 0.21 1.13 8.06 -52.49 -0.42 0.71 16 LS Contribution 286.23 15.07 4.31 4.31 Total: -1.00 -31.67 286.23 -8.83 -40.50 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: -6.32 Total: 3.98 kcal Atomic # 6 Polarization: -7.31 SS G_CDS: -1.95 Total: -9.26 kcal Atomic # 7 Polarization: -56.16 SS G_CDS: 0.15 Total: -56.01 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -31.67 -8.83 -40.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327511658.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 202.777 kcal (2) G-P(sol) polarization free energy of solvation -31.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 171.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 162.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds