Wall clock time and date at job start Sun Mar 29 2020 23:38:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30520 * 126.34941 * 2 1 4 4 N 1.28594 * 109.67358 * 180.02562 * 3 2 1 5 5 C 1.30515 * 109.67610 * 0.02562 * 4 3 2 6 6 C 1.50705 * 126.34957 * 179.97438 * 5 4 3 7 7 N 1.46891 * 109.47163 * 90.01691 * 6 5 4 8 8 C 1.46900 * 110.99776 * 180.02562 * 7 6 5 9 9 C 1.53006 * 109.47303 * 180.02562 * 8 7 6 10 10 H 1.08998 * 109.46505 * 304.99837 * 9 8 7 11 11 C 1.52997 * 109.47127 * 64.99966 * 9 8 7 12 12 C 1.52992 * 109.47223 * 185.00471 * 9 8 7 13 13 C 1.50697 * 109.47463 * 174.99857 * 12 9 8 14 14 H 1.08007 * 119.99713 * 0.02562 * 13 12 9 15 15 C 1.37879 * 120.00558 * 179.97438 * 13 12 9 16 16 N 1.31509 * 119.99821 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00224 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.47047 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.47062 * 119.99736 * 17 15 13 20 20 H 1.48495 * 109.47299 * 240.00155 * 17 15 13 21 21 N 1.35494 * 126.34459 * 180.27937 * 2 1 3 22 22 C 1.46499 * 126.98300 * 359.97438 * 21 2 1 23 23 H 1.09005 * 109.47209 * 89.97166 * 1 2 3 24 24 H 1.08999 * 109.47357 * 209.97105 * 1 2 3 25 25 H 1.09000 * 109.47481 * 329.97102 * 1 2 3 26 26 H 1.09008 * 109.46338 * 330.01944 * 6 5 4 27 27 H 1.09001 * 109.47157 * 210.02456 * 6 5 4 28 28 H 1.00900 * 111.00730 * 303.95428 * 7 6 5 29 29 H 1.09007 * 109.47006 * 60.00373 * 8 7 6 30 30 H 1.08996 * 109.47541 * 300.00579 * 8 7 6 31 31 H 1.09002 * 109.47153 * 180.02562 * 11 9 8 32 32 H 1.09001 * 109.46832 * 60.00321 * 11 9 8 33 33 H 1.09004 * 109.47261 * 300.00303 * 11 9 8 34 34 H 1.09002 * 109.46906 * 294.99936 * 12 9 8 35 35 H 1.09006 * 109.47717 * 54.99311 * 12 9 8 36 36 H 0.97002 * 120.00259 * 179.97438 * 16 15 13 37 37 H 1.09002 * 109.47088 * 270.15700 * 22 21 2 38 38 H 1.08995 * 109.47158 * 30.16347 * 22 21 2 39 39 H 1.09001 * 109.47319 * 150.16143 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2806 1.0512 0.0000 4 7 3.5124 0.6822 -0.0005 5 6 3.5807 -0.6211 -0.0015 6 6 4.8396 -1.4496 -0.0029 7 7 5.2493 -1.7201 1.3816 8 6 6.4764 -2.5269 1.4193 9 6 6.8706 -2.7880 2.8745 10 1 6.9582 -1.8387 3.4030 11 6 5.7992 -3.6490 3.5465 12 6 8.2133 -3.5202 2.9156 13 6 8.6610 -3.6686 4.3469 14 1 8.0488 -3.2798 5.1472 15 6 9.8516 -4.3015 4.6348 16 7 10.5968 -4.7753 3.6603 17 14 10.4068 -4.4847 6.4090 18 1 9.3979 -3.8709 7.3093 19 1 10.5500 -5.9260 6.7365 20 1 11.7135 -3.8033 6.5916 21 7 2.3099 -1.0913 -0.0053 22 6 1.8896 -2.4947 -0.0116 23 1 -0.3634 0.0005 -1.0277 24 1 -0.3634 -0.8902 0.5134 25 1 -0.3634 0.8897 0.5143 26 1 5.6321 -0.9053 -0.5166 27 1 4.6536 -2.3923 -0.5176 28 1 5.3655 -0.8615 1.8987 29 1 7.2801 -1.9897 0.9156 30 1 6.3022 -3.4770 0.9144 31 1 6.0798 -3.8346 4.5833 32 1 5.7117 -4.5982 3.0179 33 1 4.8426 -3.1272 3.5172 34 1 8.1030 -4.5067 2.4653 35 1 8.9564 -2.9482 2.3599 36 1 11.4346 -5.2203 3.8628 37 1 1.7831 -2.8467 1.0145 38 1 0.9341 -2.5855 -0.5281 39 1 2.6391 -3.0962 -0.5260 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332975475.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:38:51 Heat of formation + Delta-G solvation = 58.273052 kcal Electronic energy + Delta-G solvation = -18181.575521 eV Core-core repulsion = 15352.947783 eV Total energy + Delta-G solvation = -2828.627738 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.21471 -37.09147 -35.27033 -34.37586 -32.59795 -31.68129 -28.74925 -27.59853 -26.91031 -26.12369 -24.33965 -22.29867 -21.24969 -20.93052 -19.16993 -17.03453 -16.71897 -16.32774 -15.50815 -14.96727 -14.73873 -14.41163 -14.13556 -13.80464 -13.64403 -13.21820 -13.04202 -12.87619 -12.55621 -12.38728 -12.09256 -11.60015 -11.54579 -11.39856 -10.88021 -10.78713 -10.39528 -10.32178 -10.30952 -10.27890 -9.74460 -9.30840 -9.08413 -8.95759 -8.34653 -8.31049 -5.99190 -4.00226 1.64043 2.32144 2.75797 3.31473 3.39229 3.43370 4.05633 4.21203 4.35108 4.46259 4.54652 4.70678 4.79343 4.95377 5.06782 5.12965 5.36801 5.38222 5.39803 5.58674 5.66910 5.77991 5.87104 6.05916 6.09107 6.31377 6.46973 6.61119 6.70275 6.91652 7.10894 7.12024 7.22598 7.47080 7.67527 7.82134 8.00798 8.44734 8.66719 9.06266 9.63434 11.12376 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.046752 B = 0.003439 C = 0.003409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.763902 B = 8139.351066 C = 8211.750773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.165 3.835 3 N -0.296 5.296 4 N -0.293 5.293 5 C 0.187 3.813 6 C 0.143 3.857 7 N -0.684 5.684 8 C 0.064 3.936 9 C -0.083 4.083 10 H 0.055 0.945 11 C -0.122 4.122 12 C 0.028 3.972 13 C -0.512 4.512 14 H 0.057 0.943 15 C 0.055 3.945 16 N -0.897 5.897 17 Si 0.889 3.111 18 H -0.273 1.273 19 H -0.285 1.285 20 H -0.285 1.285 21 N -0.464 5.464 22 C 0.074 3.926 23 H 0.083 0.917 24 H 0.076 0.924 25 H 0.094 0.906 26 H 0.066 0.934 27 H 0.088 0.912 28 H 0.347 0.653 29 H 0.031 0.969 30 H 0.068 0.932 31 H 0.054 0.946 32 H 0.039 0.961 33 H 0.039 0.961 34 H 0.016 0.984 35 H 0.014 0.986 36 H 0.259 0.741 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.619 3.411 -9.266 21.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.102 4.102 3 N -0.137 5.137 4 N -0.134 5.134 5 C -0.081 4.081 6 C 0.011 3.989 7 N -0.317 5.317 8 C -0.064 4.064 9 C -0.102 4.102 10 H 0.074 0.926 11 C -0.179 4.179 12 C -0.010 4.010 13 C -0.551 4.551 14 H 0.075 0.925 15 C -0.146 4.146 16 N -0.537 5.537 17 Si 0.718 3.282 18 H -0.197 1.197 19 H -0.211 1.211 20 H -0.211 1.211 21 N -0.155 5.155 22 C -0.069 4.069 23 H 0.101 0.899 24 H 0.095 0.905 25 H 0.113 0.887 26 H 0.084 0.916 27 H 0.106 0.894 28 H 0.165 0.835 29 H 0.049 0.951 30 H 0.087 0.913 31 H 0.073 0.927 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.035 0.965 35 H 0.032 0.968 36 H 0.069 0.931 37 H 0.106 0.894 38 H 0.106 0.894 39 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -19.449 4.191 -9.241 21.937 hybrid contribution 0.717 -0.954 0.681 1.374 sum -18.732 3.237 -8.560 20.848 Atomic orbital electron populations 1.20179 0.83922 1.04496 1.03745 1.24798 0.97011 0.83047 1.05367 1.74226 0.96481 1.24014 1.19029 1.74245 1.12171 1.08190 1.18745 1.24739 0.86937 0.92296 1.04122 1.20214 0.89048 0.96754 0.92870 1.60610 1.36686 1.24133 1.10266 1.22202 0.88028 0.96553 0.99602 1.21211 0.97881 0.99354 0.91734 0.92637 1.21585 0.97034 0.98503 1.00815 1.19121 0.89655 0.95105 0.97117 1.21270 1.04818 1.36360 0.92632 0.92512 1.25019 0.96774 0.95773 0.96993 1.69971 1.13363 1.39104 1.31230 0.86574 0.78611 0.77694 0.85365 1.19742 1.21099 1.21079 1.45930 1.06636 1.08826 1.54132 1.22102 1.02197 0.77843 1.04713 0.89854 0.90485 0.88742 0.91595 0.89409 0.83495 0.95079 0.91305 0.92680 0.94157 0.94186 0.96537 0.96800 0.93138 0.89412 0.89410 0.88877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.41 10.05 36.00 0.36 -0.05 16 2 C 0.16 1.90 8.03 -154.99 -1.24 0.66 16 3 N -0.30 -4.58 12.21 32.79 0.40 -4.18 16 4 N -0.29 -4.76 12.21 32.80 0.40 -4.36 16 5 C 0.19 2.50 7.54 -154.98 -1.17 1.33 16 6 C 0.14 1.72 6.04 -4.98 -0.03 1.69 16 7 N -0.68 -9.61 5.94 -115.05 -0.68 -10.29 16 8 C 0.06 1.04 5.07 -3.82 -0.02 1.02 16 9 C -0.08 -1.64 2.48 -90.62 -0.22 -1.87 16 10 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 11 C -0.12 -2.28 8.89 37.16 0.33 -1.95 16 12 C 0.03 0.69 4.45 -27.89 -0.12 0.57 16 13 C -0.51 -14.24 8.41 -34.44 -0.29 -14.53 16 14 H 0.06 1.55 7.06 -52.48 -0.37 1.18 16 15 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 16 N -0.90 -26.80 13.29 55.43 0.74 -26.06 16 17 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 18 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 19 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 20 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 21 N -0.46 -5.03 3.15 -118.00 -0.37 -5.40 16 22 C 0.07 0.48 10.71 59.85 0.64 1.12 16 23 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 24 H 0.08 0.33 7.87 -51.93 -0.41 -0.08 16 25 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 26 H 0.07 0.80 8.14 -51.92 -0.42 0.38 16 27 H 0.09 0.89 7.21 -51.93 -0.37 0.51 16 28 H 0.35 5.17 8.72 -39.29 -0.34 4.83 16 29 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.05 1.12 6.95 -51.93 -0.36 0.76 16 32 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.04 0.67 7.75 -51.93 -0.40 0.27 16 34 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 37 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.09 0.33 7.82 -51.93 -0.41 -0.08 16 39 H 0.09 0.53 7.19 -51.93 -0.37 0.16 16 LS Contribution 325.10 15.07 4.90 4.90 Total: -1.00 -33.56 325.10 -7.91 -41.46 By element: Atomic # 1 Polarization: 4.25 SS G_CDS: -6.40 Total: -2.15 kcal Atomic # 6 Polarization: -8.67 SS G_CDS: -1.87 Total: -10.54 kcal Atomic # 7 Polarization: -50.78 SS G_CDS: 0.48 Total: -50.29 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -33.56 -7.91 -41.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332975475.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.736 kcal (2) G-P(sol) polarization free energy of solvation -33.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds