Wall clock time and date at job start Sun Mar 29 2020 22:55:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42906 * 109.46909 * 2 1 4 4 C 1.42903 * 113.99735 * 180.02562 * 3 2 1 5 5 C 1.52995 * 115.56132 * 325.68673 * 4 3 2 6 6 C 1.53002 * 117.49480 * 111.38010 * 4 3 2 7 7 C 1.53001 * 117.49411 * 180.02562 * 4 3 2 8 8 H 1.08996 * 117.51542 * 145.03328 * 7 4 3 9 9 N 1.46898 * 117.49974 * 359.97438 * 7 4 3 10 10 C 1.46907 * 110.99723 * 154.98602 * 9 7 4 11 11 C 1.52998 * 109.46923 * 180.02562 * 10 9 7 12 12 H 1.09000 * 109.47193 * 55.00000 * 11 10 9 13 13 C 1.47206 * 109.47324 * 295.00037 * 11 10 9 14 14 N 7.27385 * 94.99339 * 344.75236 * 2 1 3 15 15 C 1.53001 * 109.47197 * 175.00125 * 11 10 9 16 16 C 1.50694 * 109.47168 * 184.99933 * 15 11 10 17 17 H 1.08000 * 120.00563 * 359.97438 * 16 15 11 18 18 C 1.37885 * 119.99902 * 179.97438 * 16 15 11 19 19 N 1.31518 * 119.99792 * 179.72330 * 18 16 15 20 20 Si 1.86795 * 120.00009 * 0.02562 * 18 16 15 21 21 H 1.48501 * 109.47088 * 89.99795 * 20 18 16 22 22 H 1.48495 * 109.47293 * 209.99997 * 20 18 16 23 23 H 1.48507 * 109.47015 * 329.99955 * 20 18 16 24 24 H 1.09002 * 109.47429 * 59.99871 * 1 2 3 25 25 H 1.09002 * 109.46549 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46942 * 299.99754 * 1 2 3 27 27 H 1.09005 * 109.46942 * 240.00246 * 2 1 3 28 28 H 1.08994 * 109.47751 * 120.00202 * 2 1 3 29 29 H 1.08999 * 109.47454 * 274.30862 * 5 4 3 30 30 H 1.09002 * 109.47312 * 34.31498 * 5 4 3 31 31 H 1.08999 * 109.46904 * 154.30991 * 5 4 3 32 32 H 1.08993 * 117.50359 * 359.97438 * 6 4 3 33 33 H 1.08997 * 117.51284 * 214.96642 * 6 4 3 34 34 H 1.00899 * 111.00077 * 278.94035 * 9 7 4 35 35 H 1.09000 * 109.47152 * 60.00182 * 10 9 7 36 36 H 1.08990 * 109.46908 * 299.99917 * 10 9 7 37 37 H 1.08998 * 109.46837 * 64.99954 * 15 11 10 38 38 H 1.09002 * 109.46926 * 304.99758 * 15 11 10 39 39 H 0.97000 * 119.99468 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.4309 1.4602 -0.0006 5 6 4.1793 0.3757 0.7770 6 6 4.0955 2.0094 -1.2646 7 6 4.0279 2.8689 0.0000 8 1 4.9540 3.0231 0.5537 9 7 3.0928 4.0019 0.0005 10 6 3.7163 5.1987 0.5809 11 6 2.7140 6.3546 0.5648 12 1 1.8000 6.0501 1.0746 13 6 2.4024 6.7145 -0.8282 14 7 2.1631 6.9912 -1.9057 15 6 3.3187 7.5640 1.2808 16 6 2.2885 8.6599 1.3731 17 1 1.3013 8.5092 0.9618 18 6 2.6062 9.8552 1.9827 19 7 1.7088 10.8136 2.0584 20 14 4.3138 10.1162 2.6935 21 1 5.1997 10.6970 1.6528 22 1 4.2322 11.0454 3.8489 23 1 4.8669 8.8137 3.1438 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 4.2446 0.6610 1.8270 30 1 3.6433 -0.5694 0.6898 31 1 5.1834 0.2629 0.3681 32 1 3.4462 2.2842 -2.0958 33 1 5.0660 1.5984 -1.5424 34 1 2.7497 4.1879 -0.9299 35 1 4.5947 5.4709 -0.0043 36 1 4.0143 4.9911 1.6085 37 1 4.1822 7.9233 0.7211 38 1 3.6310 7.2735 2.2839 39 1 1.9322 11.6544 2.4875 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001336854526.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:55:04 Heat of formation + Delta-G solvation = 0.621693 kcal Electronic energy + Delta-G solvation = -18136.555794 eV Core-core repulsion = 15273.135354 eV Total energy + Delta-G solvation = -2863.420440 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.40536 -37.33634 -35.89998 -34.17848 -32.94670 -31.26262 -30.76969 -28.64304 -26.58467 -23.11666 -22.82827 -21.89925 -21.21468 -20.27412 -16.92236 -16.86877 -16.70725 -15.79184 -15.62928 -14.91280 -14.56598 -14.21749 -13.69230 -13.55547 -13.13919 -12.94422 -12.77395 -12.54989 -12.48697 -12.33243 -12.12303 -12.02665 -11.92521 -11.43385 -11.32351 -11.16375 -10.96806 -10.83620 -10.50524 -10.26350 -9.98140 -9.78354 -9.32125 -9.14695 -8.59923 -8.13608 -6.08794 -4.09296 3.27978 3.35406 3.36030 3.38848 3.53925 3.56723 3.67454 4.00592 4.39735 4.57015 4.71046 4.76147 4.83951 4.95117 5.11546 5.15779 5.19744 5.25815 5.36622 5.41953 5.50297 5.57480 5.62314 5.70768 5.71813 5.76114 5.85189 6.00972 6.03047 6.22132 6.37870 6.96734 7.00441 7.14348 7.30004 7.39204 7.65493 8.36027 8.44702 8.95163 9.50915 11.04393 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.028040 B = 0.004179 C = 0.004042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.349688 B = 6698.187645 C = 6925.010869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.051 3.949 3 O -0.328 6.328 4 C 0.048 3.952 5 C -0.144 4.144 6 C -0.224 4.224 7 C 0.053 3.947 8 H 0.119 0.881 9 N -0.648 5.648 10 C 0.065 3.935 11 C 0.017 3.983 12 H 0.118 0.882 13 C 0.238 3.762 14 N -0.469 5.469 15 C -0.004 4.004 16 C -0.528 4.528 17 H 0.074 0.926 18 C 0.071 3.929 19 N -0.897 5.897 20 Si 0.878 3.122 21 H -0.278 1.278 22 H -0.287 1.287 23 H -0.262 1.262 24 H 0.062 0.938 25 H 0.067 0.933 26 H 0.065 0.935 27 H 0.043 0.957 28 H 0.051 0.949 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.099 0.901 33 H 0.097 0.903 34 H 0.344 0.656 35 H 0.037 0.963 36 H 0.093 0.907 37 H 0.019 0.981 38 H 0.040 0.960 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.058 -23.111 -1.196 23.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.025 4.025 3 O -0.246 6.246 4 C 0.006 3.994 5 C -0.201 4.201 6 C -0.264 4.264 7 C -0.059 4.059 8 H 0.136 0.864 9 N -0.278 5.278 10 C -0.065 4.065 11 C -0.005 4.005 12 H 0.135 0.865 13 C -0.079 4.079 14 N -0.145 5.145 15 C -0.043 4.043 16 C -0.566 4.566 17 H 0.092 0.908 18 C -0.131 4.131 19 N -0.535 5.535 20 Si 0.705 3.295 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.187 1.187 24 H 0.081 0.919 25 H 0.086 0.914 26 H 0.084 0.916 27 H 0.062 0.938 28 H 0.069 0.931 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.118 0.882 33 H 0.115 0.885 34 H 0.164 0.836 35 H 0.055 0.945 36 H 0.111 0.889 37 H 0.037 0.963 38 H 0.058 0.942 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 5.207 -22.503 -2.170 23.199 hybrid contribution 1.575 0.332 -0.006 1.609 sum 6.782 -22.171 -2.175 23.287 Atomic orbital electron populations 1.21735 0.93764 1.01902 1.03442 1.22513 0.95385 0.84927 0.99712 1.88090 1.17424 1.25004 1.94087 1.22180 0.82085 0.96390 0.98700 1.21807 1.00011 0.97574 1.00744 1.24275 1.02566 1.06053 0.93461 1.22798 0.95583 0.88086 0.99397 0.86376 1.60187 1.35350 1.04533 1.27683 1.22193 0.95196 0.88146 1.00939 1.19074 1.00986 0.96057 0.84374 0.86456 1.29249 0.92279 0.91793 0.94584 1.81126 1.09792 1.09964 1.13655 1.19631 0.96979 0.91962 0.95683 1.21041 0.99418 0.97599 1.38495 0.90761 1.24996 0.96981 0.95747 0.95413 1.69912 1.34350 1.05379 1.43892 0.86807 0.85013 0.78610 0.79058 1.20337 1.21251 1.18677 0.91894 0.91403 0.91591 0.93835 0.93133 0.91075 0.91332 0.91279 0.88245 0.88471 0.83570 0.94509 0.88890 0.96278 0.94229 0.92583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 10.28 37.16 0.38 -0.95 16 2 C 0.05 0.49 5.69 37.16 0.21 0.70 16 3 O -0.33 -4.23 10.35 -35.23 -0.36 -4.59 16 4 C 0.05 0.53 3.03 -90.62 -0.27 0.25 16 5 C -0.14 -1.15 9.49 37.15 0.35 -0.80 16 6 C -0.22 -2.32 9.82 -26.70 -0.26 -2.58 16 7 C 0.05 0.61 6.04 -67.69 -0.41 0.20 16 8 H 0.12 1.16 7.90 -51.93 -0.41 0.75 16 9 N -0.65 -9.01 6.54 -106.70 -0.70 -9.70 16 10 C 0.07 0.93 4.97 -3.82 -0.02 0.91 16 11 C 0.02 0.31 2.42 -93.40 -0.23 0.08 16 12 H 0.12 2.12 8.14 -51.93 -0.42 1.70 16 13 C 0.24 4.88 12.98 -20.69 -0.27 4.61 16 14 N -0.47 -10.45 18.55 42.23 0.78 -9.67 16 15 C 0.00 -0.08 3.49 -27.89 -0.10 -0.17 16 16 C -0.53 -14.38 9.15 -34.44 -0.32 -14.69 16 17 H 0.07 2.23 7.84 -52.49 -0.41 1.82 16 18 C 0.07 2.00 5.47 -17.82 -0.10 1.91 16 19 N -0.90 -27.30 13.96 55.43 0.77 -26.53 16 20 Si 0.88 20.74 27.47 -169.99 -4.67 16.08 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 22 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.26 -5.71 6.54 56.52 0.37 -5.34 16 24 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 25 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.05 0.42 6.47 -51.93 -0.34 0.09 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.49 5.78 -51.93 -0.30 0.19 16 31 H 0.07 0.45 7.90 -51.93 -0.41 0.04 16 32 H 0.10 1.14 8.09 -51.93 -0.42 0.72 16 33 H 0.10 0.82 8.05 -51.93 -0.42 0.40 16 34 H 0.34 5.10 7.59 -39.29 -0.30 4.80 16 35 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.02 0.41 7.57 -51.93 -0.39 0.02 16 38 H 0.04 0.81 7.20 -51.93 -0.37 0.43 16 39 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 328.30 15.07 4.95 4.95 Total: -1.00 -31.83 328.30 -6.57 -38.40 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -6.32 Total: 1.61 kcal Atomic # 6 Polarization: -9.52 SS G_CDS: -1.02 Total: -10.54 kcal Atomic # 7 Polarization: -46.76 SS G_CDS: 0.86 Total: -45.90 kcal Atomic # 8 Polarization: -4.23 SS G_CDS: -0.36 Total: -4.59 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -4.67 Total: 16.08 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.83 -6.57 -38.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336854526.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.024 kcal (2) G-P(sol) polarization free energy of solvation -31.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.402 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds