Wall clock time and date at job start Sun Mar 29 2020 22:55:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42906 * 109.46909 * 2 1 4 4 C 1.42903 * 113.99735 * 180.02562 * 3 2 1 5 5 C 1.52995 * 115.56132 * 325.68673 * 4 3 2 6 6 C 1.53002 * 117.49480 * 111.38010 * 4 3 2 7 7 C 1.53001 * 117.49411 * 180.02562 * 4 3 2 8 8 H 1.08996 * 117.51542 * 145.03328 * 7 4 3 9 9 N 1.46898 * 117.49974 * 359.97438 * 7 4 3 10 10 C 1.46907 * 110.99723 * 154.98602 * 9 7 4 11 11 C 1.52998 * 109.46923 * 180.02562 * 10 9 7 12 12 H 1.09000 * 109.47193 * 55.00000 * 11 10 9 13 13 C 1.47206 * 109.47324 * 295.00037 * 11 10 9 14 14 N 7.27385 * 94.99339 * 344.75236 * 2 1 3 15 15 C 1.53001 * 109.47197 * 175.00125 * 11 10 9 16 16 C 1.50694 * 109.47168 * 184.99933 * 15 11 10 17 17 H 1.08000 * 120.00563 * 359.97438 * 16 15 11 18 18 C 1.37885 * 119.99902 * 179.97438 * 16 15 11 19 19 N 1.31518 * 119.99792 * 179.72330 * 18 16 15 20 20 Si 1.86795 * 120.00009 * 0.02562 * 18 16 15 21 21 H 1.48501 * 109.47088 * 89.99795 * 20 18 16 22 22 H 1.48495 * 109.47293 * 209.99997 * 20 18 16 23 23 H 1.48507 * 109.47015 * 329.99955 * 20 18 16 24 24 H 1.09002 * 109.47429 * 59.99871 * 1 2 3 25 25 H 1.09002 * 109.46549 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46942 * 299.99754 * 1 2 3 27 27 H 1.09005 * 109.46942 * 240.00246 * 2 1 3 28 28 H 1.08994 * 109.47751 * 120.00202 * 2 1 3 29 29 H 1.08999 * 109.47454 * 274.30862 * 5 4 3 30 30 H 1.09002 * 109.47312 * 34.31498 * 5 4 3 31 31 H 1.08999 * 109.46904 * 154.30991 * 5 4 3 32 32 H 1.08993 * 117.50359 * 359.97438 * 6 4 3 33 33 H 1.08997 * 117.51284 * 214.96642 * 6 4 3 34 34 H 1.00899 * 111.00077 * 278.94035 * 9 7 4 35 35 H 1.09000 * 109.47152 * 60.00182 * 10 9 7 36 36 H 1.08990 * 109.46908 * 299.99917 * 10 9 7 37 37 H 1.08998 * 109.46837 * 64.99954 * 15 11 10 38 38 H 1.09002 * 109.46926 * 304.99758 * 15 11 10 39 39 H 0.97000 * 119.99468 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.4309 1.4602 -0.0006 5 6 4.1793 0.3757 0.7770 6 6 4.0955 2.0094 -1.2646 7 6 4.0279 2.8689 0.0000 8 1 4.9540 3.0231 0.5537 9 7 3.0928 4.0019 0.0005 10 6 3.7163 5.1987 0.5809 11 6 2.7140 6.3546 0.5648 12 1 1.8000 6.0501 1.0746 13 6 2.4024 6.7145 -0.8282 14 7 2.1631 6.9912 -1.9057 15 6 3.3187 7.5640 1.2808 16 6 2.2885 8.6599 1.3731 17 1 1.3013 8.5092 0.9618 18 6 2.6062 9.8552 1.9827 19 7 1.7088 10.8136 2.0584 20 14 4.3138 10.1162 2.6935 21 1 5.1997 10.6970 1.6528 22 1 4.2322 11.0454 3.8489 23 1 4.8669 8.8137 3.1438 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 4.2446 0.6610 1.8270 30 1 3.6433 -0.5694 0.6898 31 1 5.1834 0.2629 0.3681 32 1 3.4462 2.2842 -2.0958 33 1 5.0660 1.5984 -1.5424 34 1 2.7497 4.1879 -0.9299 35 1 4.5947 5.4709 -0.0043 36 1 4.0143 4.9911 1.6085 37 1 4.1822 7.9233 0.7211 38 1 3.6310 7.2735 2.2839 39 1 1.9322 11.6544 2.4875 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001336854526.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:55:03 Heat of formation + Delta-G solvation = -21.353784 kcal Electronic energy + Delta-G solvation = -18137.508722 eV Core-core repulsion = 15273.135354 eV Total energy + Delta-G solvation = -2864.373368 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.23962 -38.71274 -36.98885 -35.73531 -34.64228 -32.76959 -31.56140 -29.53479 -28.13674 -24.21859 -23.80564 -23.41085 -22.35541 -21.05107 -18.93361 -18.31169 -17.64502 -16.87284 -16.46957 -16.28785 -15.64131 -15.48621 -15.08137 -14.67664 -14.42427 -14.30568 -14.11288 -13.89429 -13.63308 -13.21424 -13.19941 -13.12993 -12.91155 -12.71837 -12.66904 -12.54064 -12.11563 -11.94699 -11.72526 -11.71147 -11.57197 -11.37816 -11.12395 -10.73060 -9.98018 -9.09660 -8.24042 -6.30083 1.44247 1.45768 1.57205 1.89723 1.91501 2.42107 2.63699 2.82115 3.09864 3.11487 3.21313 3.80246 3.99890 4.06514 4.14695 4.22883 4.39272 4.42015 4.44008 4.52107 4.58478 4.73980 4.85341 4.87827 4.90218 4.93899 5.00400 5.03578 5.06489 5.24764 5.25429 5.30675 5.46071 5.64022 6.07306 6.25013 6.28046 6.53948 6.72324 6.79594 7.34246 8.93132 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.028040 B = 0.004179 C = 0.004042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.349688 B = 6698.187645 C = 6925.010869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.047 3.953 3 O -0.363 6.363 4 C 0.042 3.958 5 C -0.140 4.140 6 C -0.219 4.219 7 C 0.039 3.961 8 H 0.141 0.859 9 N -0.661 5.661 10 C 0.077 3.923 11 C 0.023 3.977 12 H 0.115 0.885 13 C 0.248 3.752 14 N -0.507 5.507 15 C -0.001 4.001 16 C -0.533 4.533 17 H 0.026 0.974 18 C 0.002 3.998 19 N -0.956 5.956 20 Si 0.951 3.049 21 H -0.276 1.276 22 H -0.289 1.289 23 H -0.221 1.221 24 H 0.049 0.951 25 H 0.092 0.908 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.065 0.935 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.120 0.880 34 H 0.334 0.666 35 H 0.048 0.952 36 H 0.117 0.883 37 H 0.028 0.972 38 H 0.067 0.933 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.974 -25.467 -0.063 27.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.029 4.029 3 O -0.281 6.281 4 C 0.000 4.000 5 C -0.197 4.197 6 C -0.258 4.258 7 C -0.072 4.072 8 H 0.158 0.842 9 N -0.290 5.290 10 C -0.052 4.052 11 C 0.001 3.999 12 H 0.133 0.867 13 C -0.068 4.068 14 N -0.185 5.185 15 C -0.040 4.040 16 C -0.571 4.571 17 H 0.044 0.956 18 C -0.195 4.195 19 N -0.596 5.596 20 Si 0.773 3.227 21 H -0.202 1.202 22 H -0.215 1.215 23 H -0.143 1.143 24 H 0.068 0.932 25 H 0.110 0.890 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.083 0.917 29 H 0.091 0.909 30 H 0.094 0.906 31 H 0.105 0.895 32 H 0.100 0.900 33 H 0.139 0.861 34 H 0.153 0.847 35 H 0.066 0.934 36 H 0.135 0.865 37 H 0.046 0.954 38 H 0.085 0.915 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 8.129 -24.908 -1.039 26.221 hybrid contribution 0.527 1.035 -0.418 1.234 sum 8.656 -23.873 -1.457 25.435 Atomic orbital electron populations 1.21766 0.93655 1.03136 1.02228 1.22678 0.95561 0.83914 1.00771 1.88039 1.18854 1.26941 1.94301 1.22455 0.81617 0.96747 0.99133 1.21822 1.00630 0.96789 1.00438 1.24265 1.03279 1.05652 0.92628 1.23014 0.96089 0.87434 1.00641 0.84176 1.60178 1.36592 1.05068 1.27132 1.22094 0.93804 0.86687 1.02640 1.19129 1.01986 0.96507 0.82276 0.86743 1.29840 0.91226 0.90732 0.95018 1.81118 1.11056 1.11202 1.15095 1.19579 0.95483 0.91227 0.97665 1.21417 0.98929 0.99545 1.37246 0.95600 1.26082 1.01979 0.95330 0.96104 1.70101 1.37359 1.06274 1.45883 0.85660 0.78819 0.80291 0.77921 1.20182 1.21548 1.14273 0.93188 0.88968 0.92668 0.93006 0.91660 0.90886 0.90561 0.89475 0.90046 0.86139 0.84742 0.93395 0.86489 0.95394 0.91456 0.92651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.54 10.28 71.98 0.74 -1.80 16 2 C 0.05 0.83 5.69 71.98 0.41 1.24 16 3 O -0.36 -8.97 10.35 -148.98 -1.54 -10.52 16 4 C 0.04 0.82 3.03 -10.79 -0.03 0.79 16 5 C -0.14 -1.78 9.49 71.98 0.68 -1.10 16 6 C -0.22 -4.09 9.82 30.61 0.30 -3.78 16 7 C 0.04 0.80 6.04 44.93 0.27 1.07 16 8 H 0.14 2.19 7.90 -2.39 -0.02 2.17 16 9 N -0.66 -17.27 6.54 -491.48 -3.22 -20.49 16 10 C 0.08 1.98 4.97 86.30 0.43 2.41 16 11 C 0.02 0.80 2.42 -12.60 -0.03 0.77 16 12 H 0.11 4.10 8.14 -2.39 -0.02 4.08 16 13 C 0.25 10.21 12.98 89.42 1.16 11.37 16 14 N -0.51 -23.05 18.55 20.03 0.37 -22.67 16 15 C 0.00 -0.02 3.49 29.85 0.10 0.08 16 16 C -0.53 -29.36 9.15 25.60 0.23 -29.13 16 17 H 0.03 1.62 7.84 -2.91 -0.02 1.60 16 18 C 0.00 0.09 5.47 84.66 0.46 0.55 16 19 N -0.96 -59.96 13.96 21.45 0.30 -59.66 16 20 Si 0.95 41.62 27.47 68.60 1.88 43.51 16 21 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 22 H -0.29 -12.72 7.11 99.48 0.71 -12.01 16 23 H -0.22 -8.13 6.54 99.48 0.65 -7.48 16 24 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 25 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.05 1.03 8.14 -2.38 -0.02 1.01 16 27 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 28 H 0.07 0.95 6.47 -2.39 -0.02 0.93 16 29 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.08 0.85 5.78 -2.39 -0.01 0.83 16 31 H 0.09 0.79 7.90 -2.39 -0.02 0.77 16 32 H 0.08 1.81 8.09 -2.39 -0.02 1.79 16 33 H 0.12 1.64 8.05 -2.39 -0.02 1.62 16 34 H 0.33 9.74 7.59 -89.69 -0.68 9.06 16 35 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.12 2.48 8.14 -2.39 -0.02 2.46 16 37 H 0.03 1.11 7.57 -2.39 -0.02 1.09 16 38 H 0.07 2.44 7.20 -2.39 -0.02 2.42 16 39 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 Total: -1.00 -71.58 328.30 2.82 -68.76 By element: Atomic # 1 Polarization: 18.31 SS G_CDS: 0.29 Total: 18.60 kcal Atomic # 6 Polarization: -22.26 SS G_CDS: 4.73 Total: -17.53 kcal Atomic # 7 Polarization: -100.27 SS G_CDS: -2.55 Total: -102.82 kcal Atomic # 8 Polarization: -8.97 SS G_CDS: -1.54 Total: -10.52 kcal Atomic # 14 Polarization: 41.62 SS G_CDS: 1.88 Total: 43.51 kcal Total: -71.58 2.82 -68.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336854526.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.404 kcal (2) G-P(sol) polarization free energy of solvation -71.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds