Wall clock time and date at job start Sun Mar 29 2020 23:55:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46894 * 109.47202 * 2 1 4 4 C 1.46898 * 111.00521 * 72.13884 * 3 2 1 5 5 C 1.53006 * 109.46736 * 68.66601 * 4 3 2 6 6 C 1.38584 * 111.00008 * 196.09660 * 3 2 1 7 7 N 1.31214 * 126.47198 * 343.44466 * 6 3 2 8 8 N 1.28533 * 109.85764 * 180.02562 * 7 6 3 9 9 C 1.30293 * 110.05685 * 0.02562 * 8 7 6 10 10 C 1.50693 * 126.34685 * 180.02562 * 9 8 7 11 11 C 1.52999 * 109.47281 * 89.97742 * 10 9 8 12 12 C 1.50702 * 109.47252 * 180.02562 * 11 10 9 13 13 H 1.07995 * 119.99806 * 359.97438 * 12 11 10 14 14 C 1.37876 * 120.00025 * 179.97438 * 12 11 10 15 15 N 1.31525 * 119.99775 * 359.97438 * 14 12 11 16 16 Si 1.86792 * 120.00269 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.47294 * 89.99527 * 16 14 12 18 18 H 1.48496 * 109.47465 * 210.00077 * 16 14 12 19 19 H 1.48501 * 109.47256 * 330.00310 * 16 14 12 20 20 N 1.36450 * 126.47170 * 163.47334 * 6 3 2 21 21 C 1.46504 * 127.14222 * 359.97338 * 20 6 3 22 22 H 1.09000 * 109.47277 * 182.20039 * 1 2 3 23 23 H 1.09002 * 109.47214 * 302.20049 * 1 2 3 24 24 H 1.08996 * 109.47508 * 62.19888 * 1 2 3 25 25 H 1.08997 * 109.47015 * 239.99771 * 2 1 3 26 26 H 1.09004 * 109.47194 * 119.99954 * 2 1 3 27 27 H 1.08993 * 109.47610 * 188.66627 * 4 3 2 28 28 H 1.08997 * 109.47210 * 308.67102 * 4 3 2 29 29 H 1.09000 * 109.46797 * 179.97438 * 5 4 3 30 30 H 1.08995 * 109.47322 * 299.97102 * 5 4 3 31 31 H 1.09000 * 109.47366 * 59.97445 * 5 4 3 32 32 H 1.09002 * 109.46987 * 209.97705 * 10 9 8 33 33 H 1.09004 * 109.47481 * 329.97100 * 10 9 8 34 34 H 1.09001 * 109.46584 * 299.99739 * 11 10 9 35 35 H 1.08991 * 109.47225 * 59.99686 * 11 10 9 36 36 H 0.96998 * 119.99761 * 180.02562 * 15 14 12 37 37 H 1.08998 * 109.47381 * 264.45192 * 21 20 6 38 38 H 1.09001 * 109.46389 * 24.44824 * 21 20 6 39 39 H 1.08997 * 109.46905 * 144.44533 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3849 0.0000 4 6 1.7986 2.0216 1.3053 5 6 2.7100 1.3735 2.3496 6 6 3.3571 1.4388 -0.3587 7 7 4.2021 0.4350 -0.3722 8 7 5.3589 0.8432 -0.7561 9 6 5.3210 2.1210 -1.0077 10 6 6.4706 2.9725 -1.4810 11 6 6.5038 2.9801 -3.0106 12 6 7.6539 3.8312 -3.4840 13 1 8.2966 4.3183 -2.7657 14 6 7.8856 3.9880 -4.8341 15 7 7.1031 3.3943 -5.7088 16 14 9.3106 5.0434 -5.4209 17 1 10.5251 4.2007 -5.5630 18 1 8.9711 5.6480 -6.7340 19 1 9.5689 6.1207 -4.4319 20 7 4.0443 2.5458 -0.7640 21 6 3.5226 3.9073 -0.9078 22 1 -0.3634 -1.0269 0.0395 23 1 -0.3634 0.5476 0.8696 24 1 -0.3634 0.4793 -0.9090 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 2.0264 3.0851 1.2341 28 1 0.7576 1.8920 1.6011 29 1 2.5463 1.8463 3.3180 30 1 2.4818 0.3102 2.4212 31 1 3.7510 1.5027 2.0535 32 1 6.3428 3.9914 -1.1153 33 1 7.4065 2.5643 -1.0993 34 1 6.6317 1.9613 -3.3763 35 1 5.5680 3.3884 -3.3923 36 1 7.2663 3.5043 -6.6586 37 1 3.2308 4.0770 -1.9442 38 1 2.6548 4.0340 -0.2606 39 1 4.2941 4.6236 -0.6255 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338544309.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:55:18 Heat of formation + Delta-G solvation = 75.730564 kcal Electronic energy + Delta-G solvation = -18964.893274 eV Core-core repulsion = 16137.022550 eV Total energy + Delta-G solvation = -2827.870724 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.59126 -38.35267 -34.80620 -33.85815 -31.90551 -31.60697 -30.03804 -27.89438 -27.14789 -25.32617 -23.94695 -22.39091 -21.73449 -20.01341 -19.74800 -17.02248 -16.64565 -16.34452 -16.00375 -15.27038 -14.60683 -14.48918 -13.82904 -13.39101 -13.30591 -13.11391 -13.07475 -12.68053 -12.44596 -12.27936 -12.06937 -11.80946 -11.40510 -11.23439 -11.06477 -10.99004 -10.93037 -10.68756 -10.29981 -9.99398 -9.83137 -9.67819 -9.23501 -9.16554 -8.40045 -7.96851 -6.04296 -4.08638 2.17097 2.55812 3.30247 3.30642 3.36998 3.39336 3.78749 4.41953 4.61024 4.78887 4.87745 4.95594 5.09663 5.10889 5.18558 5.29419 5.31626 5.35531 5.39243 5.45804 5.55712 5.65917 5.77174 5.80616 5.89780 5.96251 6.13944 6.29439 6.36762 6.48342 6.68747 6.73494 6.98160 7.48160 7.57502 7.70946 7.93258 8.30607 8.97592 9.23648 9.55930 11.06817 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.040912 B = 0.004446 C = 0.004375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.234959 B = 6296.077960 C = 6399.164018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.063 3.937 3 N -0.455 5.455 4 C 0.049 3.951 5 C -0.186 4.186 6 C 0.335 3.665 7 N -0.322 5.322 8 N -0.297 5.297 9 C 0.211 3.789 10 C -0.030 4.030 11 C 0.032 3.968 12 C -0.524 4.524 13 H 0.059 0.941 14 C 0.059 3.941 15 N -0.892 5.892 16 Si 0.895 3.105 17 H -0.279 1.279 18 H -0.287 1.287 19 H -0.273 1.273 20 N -0.477 5.477 21 C 0.081 3.919 22 H 0.064 0.936 23 H 0.055 0.945 24 H 0.063 0.937 25 H 0.085 0.915 26 H 0.055 0.945 27 H 0.076 0.924 28 H 0.091 0.909 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.057 0.943 32 H 0.068 0.932 33 H 0.088 0.912 34 H 0.025 0.975 35 H 0.014 0.986 36 H 0.262 0.738 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.450 -0.261 14.005 19.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.063 4.063 3 N -0.179 5.179 4 C -0.079 4.079 5 C -0.245 4.245 6 C -0.022 4.022 7 N -0.167 5.167 8 N -0.136 5.136 9 C -0.056 4.056 10 C -0.070 4.070 11 C -0.007 4.007 12 C -0.563 4.563 13 H 0.077 0.923 14 C -0.142 4.142 15 N -0.531 5.531 16 Si 0.722 3.278 17 H -0.205 1.205 18 H -0.212 1.212 19 H -0.198 1.198 20 N -0.171 5.171 21 C -0.062 4.062 22 H 0.083 0.917 23 H 0.074 0.926 24 H 0.082 0.918 25 H 0.104 0.896 26 H 0.073 0.927 27 H 0.095 0.905 28 H 0.110 0.890 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.087 0.913 33 H 0.106 0.894 34 H 0.044 0.956 35 H 0.033 0.967 36 H 0.071 0.929 37 H 0.102 0.898 38 H 0.103 0.897 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -13.244 -1.413 13.616 19.047 hybrid contribution 0.531 1.538 -0.143 1.633 sum -12.713 0.124 13.472 18.524 Atomic orbital electron populations 1.21826 0.94307 1.01917 1.02463 1.22040 0.95306 0.85725 1.03273 1.58928 1.09259 1.20874 1.28830 1.22364 1.00822 0.98775 0.85894 1.22381 1.00710 1.01869 0.99533 1.22272 0.91008 0.84929 1.03978 1.74514 0.96770 1.24188 1.21184 1.73994 1.14160 1.07818 1.17588 1.25562 0.85917 0.93320 1.00840 1.20425 0.90654 0.95051 1.00858 1.19066 0.97337 0.98210 0.86045 1.21142 1.13174 1.30136 0.91807 0.92312 1.25014 0.96465 0.95874 0.96895 1.69982 1.38101 1.43331 1.01653 0.86555 0.82592 0.80519 0.78105 1.20529 1.21241 1.19818 1.46071 1.10138 1.09741 1.51165 1.22026 1.00431 0.79632 1.04135 0.91669 0.92633 0.91804 0.89619 0.92665 0.90541 0.89025 0.91763 0.91750 0.92400 0.91313 0.89379 0.95642 0.96723 0.92871 0.89808 0.89717 0.89312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 10.01 37.16 0.37 -0.90 16 2 C 0.06 0.75 5.07 -3.83 -0.02 0.73 16 3 N -0.45 -5.96 4.67 -174.52 -0.81 -6.77 16 4 C 0.05 0.49 5.83 -3.82 -0.02 0.47 16 5 C -0.19 -2.00 9.38 37.16 0.35 -1.65 16 6 C 0.33 5.68 5.26 -318.88 -1.68 4.00 16 7 N -0.32 -6.46 11.29 30.31 0.34 -6.12 16 8 N -0.30 -6.55 12.18 32.99 0.40 -6.15 16 9 C 0.21 4.27 7.32 -154.02 -1.13 3.15 16 10 C -0.03 -0.62 5.53 -27.89 -0.15 -0.77 16 11 C 0.03 0.81 4.96 -27.88 -0.14 0.68 16 12 C -0.52 -14.42 9.11 -34.44 -0.31 -14.73 16 13 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 14 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 15 N -0.89 -26.70 13.29 55.43 0.74 -25.96 16 16 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 17 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 18 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 19 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 20 N -0.48 -8.17 3.21 -121.46 -0.39 -8.56 16 21 C 0.08 1.03 10.98 59.85 0.66 1.69 16 22 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 23 H 0.05 0.41 6.55 -51.93 -0.34 0.07 16 24 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.09 1.20 7.78 -51.93 -0.40 0.79 16 26 H 0.06 0.65 6.17 -51.93 -0.32 0.33 16 27 H 0.08 0.72 6.25 -51.93 -0.32 0.39 16 28 H 0.09 0.71 6.41 -51.93 -0.33 0.38 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.69 6.43 -51.93 -0.33 0.36 16 31 H 0.06 0.81 7.08 -51.93 -0.37 0.44 16 32 H 0.07 1.25 7.39 -51.93 -0.38 0.87 16 33 H 0.09 1.80 8.14 -51.93 -0.42 1.38 16 34 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 37 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.08 0.84 6.06 -51.93 -0.31 0.53 16 39 H 0.09 1.02 7.43 -51.93 -0.39 0.64 16 LS Contribution 314.98 15.07 4.75 4.75 Total: -1.00 -32.95 314.98 -8.18 -41.13 By element: Atomic # 1 Polarization: 3.22 SS G_CDS: -6.01 Total: -2.79 kcal Atomic # 6 Polarization: -3.59 SS G_CDS: -2.17 Total: -5.76 kcal Atomic # 7 Polarization: -53.84 SS G_CDS: 0.28 Total: -53.56 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -32.95 -8.18 -41.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338544309.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.857 kcal (2) G-P(sol) polarization free energy of solvation -32.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.127 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds