Wall clock time and date at job start Sun Mar 29 2020 23:55:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46894 * 109.47202 * 2 1 4 4 C 1.46898 * 111.00521 * 72.13884 * 3 2 1 5 5 C 1.53006 * 109.46736 * 68.66601 * 4 3 2 6 6 C 1.38584 * 111.00008 * 196.09660 * 3 2 1 7 7 N 1.31214 * 126.47198 * 343.44466 * 6 3 2 8 8 N 1.28533 * 109.85764 * 180.02562 * 7 6 3 9 9 C 1.30293 * 110.05685 * 0.02562 * 8 7 6 10 10 C 1.50693 * 126.34685 * 180.02562 * 9 8 7 11 11 C 1.52999 * 109.47281 * 89.97742 * 10 9 8 12 12 C 1.50702 * 109.47252 * 180.02562 * 11 10 9 13 13 H 1.07995 * 119.99806 * 359.97438 * 12 11 10 14 14 C 1.37876 * 120.00025 * 179.97438 * 12 11 10 15 15 N 1.31525 * 119.99775 * 359.97438 * 14 12 11 16 16 Si 1.86792 * 120.00269 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.47294 * 89.99527 * 16 14 12 18 18 H 1.48496 * 109.47465 * 210.00077 * 16 14 12 19 19 H 1.48501 * 109.47256 * 330.00310 * 16 14 12 20 20 N 1.36450 * 126.47170 * 163.47334 * 6 3 2 21 21 C 1.46504 * 127.14222 * 359.97338 * 20 6 3 22 22 H 1.09000 * 109.47277 * 182.20039 * 1 2 3 23 23 H 1.09002 * 109.47214 * 302.20049 * 1 2 3 24 24 H 1.08996 * 109.47508 * 62.19888 * 1 2 3 25 25 H 1.08997 * 109.47015 * 239.99771 * 2 1 3 26 26 H 1.09004 * 109.47194 * 119.99954 * 2 1 3 27 27 H 1.08993 * 109.47610 * 188.66627 * 4 3 2 28 28 H 1.08997 * 109.47210 * 308.67102 * 4 3 2 29 29 H 1.09000 * 109.46797 * 179.97438 * 5 4 3 30 30 H 1.08995 * 109.47322 * 299.97102 * 5 4 3 31 31 H 1.09000 * 109.47366 * 59.97445 * 5 4 3 32 32 H 1.09002 * 109.46987 * 209.97705 * 10 9 8 33 33 H 1.09004 * 109.47481 * 329.97100 * 10 9 8 34 34 H 1.09001 * 109.46584 * 299.99739 * 11 10 9 35 35 H 1.08991 * 109.47225 * 59.99686 * 11 10 9 36 36 H 0.96998 * 119.99761 * 180.02562 * 15 14 12 37 37 H 1.08998 * 109.47381 * 264.45192 * 21 20 6 38 38 H 1.09001 * 109.46389 * 24.44824 * 21 20 6 39 39 H 1.08997 * 109.46905 * 144.44533 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3849 0.0000 4 6 1.7986 2.0216 1.3053 5 6 2.7100 1.3735 2.3496 6 6 3.3571 1.4388 -0.3587 7 7 4.2021 0.4350 -0.3722 8 7 5.3589 0.8432 -0.7561 9 6 5.3210 2.1210 -1.0077 10 6 6.4706 2.9725 -1.4810 11 6 6.5038 2.9801 -3.0106 12 6 7.6539 3.8312 -3.4840 13 1 8.2966 4.3183 -2.7657 14 6 7.8856 3.9880 -4.8341 15 7 7.1031 3.3943 -5.7088 16 14 9.3106 5.0434 -5.4209 17 1 10.5251 4.2007 -5.5630 18 1 8.9711 5.6480 -6.7340 19 1 9.5689 6.1207 -4.4319 20 7 4.0443 2.5458 -0.7640 21 6 3.5226 3.9073 -0.9078 22 1 -0.3634 -1.0269 0.0395 23 1 -0.3634 0.5476 0.8696 24 1 -0.3634 0.4793 -0.9090 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 2.0264 3.0851 1.2341 28 1 0.7576 1.8920 1.6011 29 1 2.5463 1.8463 3.3180 30 1 2.4818 0.3102 2.4212 31 1 3.7510 1.5027 2.0535 32 1 6.3428 3.9914 -1.1153 33 1 7.4065 2.5643 -1.0993 34 1 6.6317 1.9613 -3.3763 35 1 5.5680 3.3884 -3.3923 36 1 7.2663 3.5043 -6.6586 37 1 3.2308 4.0770 -1.9442 38 1 2.6548 4.0340 -0.2606 39 1 4.2941 4.6236 -0.6255 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001338544309.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:55:18 Heat of formation + Delta-G solvation = 55.438546 kcal Electronic energy + Delta-G solvation = -18965.773202 eV Core-core repulsion = 16137.022550 eV Total energy + Delta-G solvation = -2828.750652 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -44.00989 -39.39570 -36.36341 -35.61055 -33.71838 -32.48069 -31.33724 -29.34319 -28.30275 -27.15327 -24.94104 -23.67117 -23.44376 -21.41974 -21.00116 -18.65020 -18.03665 -17.76986 -17.26905 -16.56905 -16.30450 -15.71027 -15.18671 -14.87212 -14.44770 -14.38781 -14.22466 -14.05939 -13.74293 -13.30962 -13.20523 -12.93808 -12.86328 -12.62972 -12.62645 -12.42337 -12.17517 -12.06595 -11.85167 -11.73185 -11.44719 -11.28883 -11.07064 -10.57287 -10.52400 -9.32707 -8.20055 -6.32871 0.78838 1.29636 1.43745 1.45554 1.56217 1.80712 2.42509 2.69080 3.14286 3.51060 3.75435 3.79127 3.94294 4.04841 4.17544 4.22608 4.30199 4.36446 4.40913 4.55013 4.62207 4.66648 4.71555 4.76165 4.86726 4.92833 4.99254 5.02403 5.14880 5.15542 5.36264 5.44334 5.56924 5.59259 5.73967 5.78526 6.15422 6.22862 6.83384 7.37453 7.75868 8.92202 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.040912 B = 0.004446 C = 0.004375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.234959 B = 6296.077960 C = 6399.164018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.061 3.939 3 N -0.453 5.453 4 C 0.047 3.953 5 C -0.181 4.181 6 C 0.354 3.646 7 N -0.358 5.358 8 N -0.335 5.335 9 C 0.194 3.806 10 C -0.013 4.013 11 C 0.043 3.957 12 C -0.539 4.539 13 H 0.074 0.926 14 C 0.000 4.000 15 N -0.936 5.936 16 Si 0.970 3.030 17 H -0.276 1.276 18 H -0.284 1.284 19 H -0.255 1.255 20 N -0.476 5.476 21 C 0.072 3.928 22 H 0.079 0.921 23 H 0.076 0.924 24 H 0.059 0.941 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.089 0.911 28 H 0.126 0.874 29 H 0.089 0.911 30 H 0.060 0.940 31 H 0.020 0.980 32 H 0.098 0.902 33 H 0.087 0.913 34 H -0.020 1.020 35 H -0.006 1.006 36 H 0.263 0.737 37 H 0.077 0.923 38 H 0.118 0.882 39 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.613 1.617 15.631 21.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.066 4.066 3 N -0.178 5.178 4 C -0.079 4.079 5 C -0.239 4.239 6 C -0.004 4.004 7 N -0.202 5.202 8 N -0.174 5.174 9 C -0.075 4.075 10 C -0.053 4.053 11 C 0.004 3.996 12 C -0.577 4.577 13 H 0.092 0.908 14 C -0.198 4.198 15 N -0.576 5.576 16 Si 0.794 3.206 17 H -0.202 1.202 18 H -0.210 1.210 19 H -0.179 1.179 20 N -0.170 5.170 21 C -0.069 4.069 22 H 0.098 0.902 23 H 0.095 0.905 24 H 0.078 0.922 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.107 0.893 28 H 0.144 0.856 29 H 0.108 0.892 30 H 0.079 0.921 31 H 0.039 0.961 32 H 0.116 0.884 33 H 0.105 0.895 34 H -0.002 1.002 35 H 0.012 0.988 36 H 0.072 0.928 37 H 0.095 0.905 38 H 0.137 0.863 39 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -14.423 0.479 15.270 21.010 hybrid contribution 0.759 0.907 -0.609 1.330 sum -13.664 1.386 14.661 20.089 Atomic orbital electron populations 1.21776 0.91189 1.03268 1.03201 1.22116 0.97642 0.84919 1.01873 1.59192 1.06217 1.21694 1.30732 1.22591 1.02604 0.98960 0.83721 1.22335 0.98458 1.02092 1.01039 1.22724 0.91956 0.84133 1.01544 1.74411 0.96853 1.25747 1.23186 1.73872 1.15781 1.09065 1.18643 1.25316 0.87186 0.93025 1.02021 1.20120 0.91203 0.96895 0.97063 1.18831 0.96036 0.95063 0.89625 1.21604 1.13621 1.30042 0.92443 0.90810 1.26016 0.99364 0.97217 0.97153 1.70137 1.40312 1.45111 1.02034 0.85378 0.78585 0.78890 0.77775 1.20196 1.21014 1.17865 1.46235 1.09119 1.11244 1.50396 1.22376 1.02171 0.77678 1.04657 0.90231 0.90466 0.92234 0.92626 0.92630 0.89301 0.85568 0.89171 0.92121 0.96086 0.88383 0.89466 1.00169 0.98791 0.92813 0.90475 0.86341 0.87762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 10.01 71.98 0.72 -1.27 16 2 C 0.06 1.39 5.07 86.30 0.44 1.83 16 3 N -0.45 -11.16 4.67 -706.06 -3.29 -14.45 16 4 C 0.05 0.79 5.83 86.31 0.50 1.29 16 5 C -0.18 -3.50 9.38 71.98 0.67 -2.83 16 6 C 0.35 11.97 5.26 260.11 1.37 13.34 16 7 N -0.36 -14.84 11.29 -58.01 -0.65 -15.49 16 8 N -0.33 -15.41 12.18 -49.54 -0.60 -16.01 16 9 C 0.19 8.02 7.32 137.64 1.01 9.03 16 10 C -0.01 -0.55 5.53 29.85 0.16 -0.38 16 11 C 0.04 2.28 4.96 29.85 0.15 2.43 16 12 C -0.54 -29.83 9.11 25.60 0.23 -29.60 16 13 H 0.07 3.78 7.74 -2.91 -0.02 3.75 16 14 C 0.00 0.02 5.46 84.65 0.46 0.48 16 15 N -0.94 -57.38 13.29 21.45 0.28 -57.09 16 16 Si 0.97 43.43 29.54 68.60 2.03 45.46 16 17 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 18 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 19 H -0.25 -10.59 7.11 99.48 0.71 -9.88 16 20 N -0.48 -16.16 3.21 -538.19 -1.73 -17.88 16 21 C 0.07 1.72 10.98 127.77 1.40 3.12 16 22 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 23 H 0.08 0.80 6.55 -2.39 -0.02 0.79 16 24 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 25 H 0.06 1.59 7.78 -2.39 -0.02 1.58 16 26 H 0.06 1.26 6.17 -2.39 -0.01 1.24 16 27 H 0.09 1.31 6.25 -2.39 -0.01 1.29 16 28 H 0.13 1.33 6.41 -2.39 -0.02 1.31 16 29 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.06 1.21 6.43 -2.39 -0.02 1.20 16 31 H 0.02 0.56 7.08 -2.39 -0.02 0.54 16 32 H 0.10 3.45 7.39 -2.39 -0.02 3.44 16 33 H 0.09 3.62 8.14 -2.39 -0.02 3.60 16 34 H -0.02 -1.24 8.14 -2.39 -0.02 -1.26 16 35 H -0.01 -0.36 8.14 -2.39 -0.02 -0.37 16 36 H 0.26 15.18 8.31 -92.71 -0.77 14.40 16 37 H 0.08 1.96 8.14 -2.39 -0.02 1.95 16 38 H 0.12 1.97 6.06 -2.39 -0.01 1.95 16 39 H 0.10 2.16 7.43 -2.39 -0.02 2.14 16 Total: -1.00 -74.76 314.98 4.18 -70.58 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: 1.03 Total: 7.44 kcal Atomic # 6 Polarization: -9.67 SS G_CDS: 7.12 Total: -2.55 kcal Atomic # 7 Polarization: -114.94 SS G_CDS: -5.99 Total: -120.93 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Total: -74.76 4.18 -70.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338544309.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.017 kcal (2) G-P(sol) polarization free energy of solvation -74.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.578 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds