Wall clock time and date at job start Sun Mar 29 2020 23:40:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47469 * 2 1 4 4 C 1.50703 * 109.47504 * 179.97438 * 3 2 1 5 5 N 1.30290 * 126.34881 * 269.96030 * 4 3 2 6 6 N 1.28530 * 110.05234 * 179.75998 * 5 4 3 7 7 C 1.31220 * 109.85739 * 0.45122 * 6 5 4 8 8 N 1.38573 * 126.46742 * 179.81955 * 7 6 5 9 9 C 1.46906 * 110.99827 * 123.64439 * 8 7 6 10 10 C 1.46902 * 111.00412 * 359.69429 * 8 7 6 11 11 H 1.08998 * 109.47116 * 59.99505 * 10 8 7 12 12 C 1.53002 * 109.46789 * 299.99447 * 10 8 7 13 13 C 1.50702 * 109.47561 * 180.02562 * 10 8 7 14 14 H 1.08004 * 119.99412 * 359.97438 * 13 10 8 15 15 C 1.37872 * 120.00353 * 179.97438 * 13 10 8 16 16 N 1.31516 * 119.99829 * 359.97438 * 15 13 10 17 17 Si 1.86802 * 120.00236 * 179.97438 * 15 13 10 18 18 H 1.48502 * 109.47091 * 89.99485 * 17 15 13 19 19 H 1.48493 * 109.47196 * 209.99968 * 17 15 13 20 20 H 1.48508 * 109.46638 * 330.00053 * 17 15 13 21 21 N 1.36447 * 107.05744 * 359.56179 * 7 6 5 22 22 C 1.46495 * 127.13707 * 180.28321 * 21 7 6 23 23 H 1.08998 * 109.47628 * 180.02562 * 1 2 3 24 24 H 1.08994 * 109.47204 * 300.00450 * 1 2 3 25 25 H 1.09006 * 109.46955 * 60.00128 * 1 2 3 26 26 H 1.08994 * 109.47204 * 239.99550 * 2 1 3 27 27 H 1.09006 * 109.46955 * 119.99872 * 2 1 3 28 28 H 1.09003 * 109.47507 * 59.99636 * 3 2 1 29 29 H 1.09004 * 109.47354 * 300.00203 * 3 2 1 30 30 H 1.09001 * 109.46544 * 59.99935 * 9 8 7 31 31 H 1.09001 * 109.47272 * 179.97438 * 9 8 7 32 32 H 1.09000 * 109.47033 * 299.99991 * 9 8 7 33 33 H 1.09005 * 109.46778 * 60.00269 * 12 10 8 34 34 H 1.08999 * 109.47254 * 179.97438 * 12 10 8 35 35 H 1.08993 * 109.47392 * 300.00418 * 12 10 8 36 36 H 0.96997 * 119.99699 * 180.02562 * 16 15 13 37 37 H 1.08998 * 109.47149 * 89.99841 * 22 21 7 38 38 H 1.09010 * 109.46925 * 209.99798 * 22 21 7 39 39 H 1.09003 * 109.47257 * 329.99594 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5471 1.4424 0.0006 5 7 4.3189 1.4433 1.0504 6 7 5.5527 1.4379 0.6902 7 6 5.6348 1.4430 -0.6194 8 7 6.7985 1.4432 -1.3717 9 6 6.8253 0.3052 -2.3002 10 6 7.9852 1.4442 -0.5059 11 1 7.9763 0.5545 0.1238 12 6 7.9715 2.6939 0.3767 13 6 9.2286 1.4450 -1.3575 14 1 9.1454 1.4445 -2.4343 15 6 10.4721 1.4465 -0.7620 16 7 10.5732 1.4477 0.5492 17 14 12.0132 1.4468 -1.8177 18 1 12.4204 2.8470 -2.0987 19 1 13.1073 0.7483 -1.0966 20 1 11.7368 0.7454 -3.0972 21 7 4.3579 1.4422 -1.1005 22 6 3.9420 1.4409 -2.5051 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.6767 1.9564 0.8900 29 1 1.6767 1.9563 -0.8900 30 1 5.9722 0.3675 -2.9759 31 1 7.7489 0.3297 -2.8785 32 1 6.7743 -0.6258 -1.7355 33 1 7.0723 2.6938 0.9928 34 1 8.8518 2.6945 1.0195 35 1 7.9804 3.5835 -0.2529 36 1 11.4481 1.4491 0.9681 37 1 3.8392 0.4129 -2.8526 38 1 2.9852 1.9543 -2.6013 39 1 4.6921 1.9545 -3.1067 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001339649655.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:40:25 Heat of formation + Delta-G solvation = 87.464584 kcal Electronic energy + Delta-G solvation = -19256.551534 eV Core-core repulsion = 16429.189636 eV Total energy + Delta-G solvation = -2827.361899 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.43335 -37.18818 -35.38956 -34.39433 -32.74487 -29.99296 -29.21484 -27.68335 -26.68362 -25.14817 -24.23227 -22.11948 -21.71229 -20.21549 -19.45607 -16.76803 -16.16675 -15.95464 -15.48594 -15.01119 -14.61973 -14.43238 -13.97634 -13.57170 -13.39658 -12.95954 -12.83029 -12.36723 -12.28704 -11.91694 -11.77055 -11.41654 -11.16235 -11.00694 -10.88795 -10.84433 -10.48662 -10.36696 -10.17404 -10.03417 -9.81442 -9.52656 -9.29185 -8.59986 -8.42947 -7.30843 -6.03229 -4.11504 2.29247 2.73749 3.28902 3.35335 3.36898 3.44930 4.33012 4.50337 4.63712 4.75874 4.81084 4.89954 5.12754 5.20386 5.27722 5.30161 5.39748 5.54853 5.63047 5.65532 5.78564 5.86034 5.97959 6.02355 6.13665 6.26424 6.39358 6.49692 6.95227 7.03879 7.23607 7.41777 7.48433 7.74436 7.75034 8.00451 8.30752 8.46987 8.90038 9.43502 9.53208 11.02810 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.046376 B = 0.005062 C = 0.004771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.614428 B = 5530.541469 C = 5867.412489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.119 4.119 3 C -0.021 4.021 4 C 0.145 3.855 5 N -0.286 5.286 6 N -0.316 5.316 7 C 0.384 3.616 8 N -0.454 5.454 9 C 0.033 3.967 10 C 0.230 3.770 11 H 0.021 0.979 12 C -0.143 4.143 13 C -0.519 4.519 14 H 0.064 0.936 15 C 0.064 3.936 16 N -0.882 5.882 17 Si 0.900 3.100 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.274 1.274 21 N -0.494 5.494 22 C 0.081 3.919 23 H 0.055 0.945 24 H 0.057 0.943 25 H 0.053 0.947 26 H 0.059 0.941 27 H 0.070 0.930 28 H 0.094 0.906 29 H 0.075 0.925 30 H 0.049 0.951 31 H 0.098 0.902 32 H 0.028 0.972 33 H 0.045 0.955 34 H 0.086 0.914 35 H 0.022 0.978 36 H 0.263 0.737 37 H 0.072 0.928 38 H 0.082 0.918 39 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.830 -1.958 -6.466 18.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.158 4.158 3 C -0.061 4.061 4 C -0.123 4.123 5 N -0.125 5.125 6 N -0.161 5.161 7 C 0.029 3.971 8 N -0.178 5.178 9 C -0.114 4.114 10 C 0.127 3.873 11 H 0.038 0.962 12 C -0.201 4.201 13 C -0.557 4.557 14 H 0.082 0.918 15 C -0.138 4.138 16 N -0.520 5.520 17 Si 0.728 3.272 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.199 1.199 21 N -0.191 5.191 22 C -0.063 4.063 23 H 0.074 0.926 24 H 0.076 0.924 25 H 0.072 0.928 26 H 0.078 0.922 27 H 0.089 0.911 28 H 0.112 0.888 29 H 0.093 0.907 30 H 0.068 0.932 31 H 0.116 0.884 32 H 0.047 0.953 33 H 0.064 0.936 34 H 0.105 0.895 35 H 0.041 0.959 36 H 0.073 0.927 37 H 0.091 0.909 38 H 0.101 0.899 39 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -16.184 -1.539 -5.164 17.057 hybrid contribution 0.589 -0.488 -1.654 1.822 sum -15.595 -2.027 -6.818 17.141 Atomic orbital electron populations 1.21759 0.95259 1.01821 1.01904 1.21505 0.95743 0.95736 1.02806 1.19909 0.84264 0.98161 1.03753 1.24446 0.95737 1.09249 0.82840 1.73933 0.97097 1.17163 1.24341 1.74830 1.10184 1.24109 1.06962 1.23297 0.84301 0.99620 0.89912 1.59082 0.99429 1.40079 1.19210 1.22434 1.03157 0.90270 0.95571 1.19365 0.82336 0.96096 0.89546 0.96167 1.21969 1.02341 0.96400 0.99429 1.21066 0.89582 1.52113 0.92987 0.91770 1.24900 0.98977 0.94947 0.95025 1.69932 1.24164 1.49448 1.08446 0.86474 0.82479 0.78148 0.80120 1.20590 1.21186 1.19923 1.46059 1.06131 1.58901 1.08040 1.21985 1.02130 1.03074 0.79096 0.92571 0.92375 0.92763 0.92248 0.91079 0.88767 0.90698 0.93193 0.88354 0.95321 0.93607 0.89518 0.95861 0.92725 0.90936 0.89888 0.88878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.91 37.16 0.37 -0.73 16 2 C -0.12 -1.17 5.92 -26.73 -0.16 -1.33 16 3 C -0.02 -0.23 5.59 -27.88 -0.16 -0.39 16 4 C 0.14 2.41 7.32 -154.01 -1.13 1.28 16 5 N -0.29 -6.06 12.18 32.99 0.40 -5.66 16 6 N -0.32 -7.55 9.01 30.31 0.27 -7.28 16 7 C 0.38 8.26 6.75 -318.89 -2.15 6.10 16 8 N -0.45 -10.11 4.69 -176.08 -0.83 -10.94 16 9 C 0.03 0.62 9.08 60.07 0.55 1.16 16 10 C 0.23 6.07 1.73 -68.86 -0.12 5.95 16 11 H 0.02 0.61 8.11 -51.93 -0.42 0.19 16 12 C -0.14 -3.85 8.77 37.16 0.33 -3.52 16 13 C -0.52 -14.06 7.88 -34.44 -0.27 -14.33 16 14 H 0.06 1.67 6.41 -52.48 -0.34 1.33 16 15 C 0.06 1.77 5.30 -17.82 -0.09 1.67 16 16 N -0.88 -25.49 11.32 55.43 0.63 -24.86 16 17 Si 0.90 21.00 29.54 -169.99 -5.02 15.98 16 18 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 19 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 20 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 21 N -0.49 -8.27 3.21 -121.46 -0.39 -8.66 16 22 C 0.08 0.91 9.33 59.84 0.56 1.46 16 23 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 24 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.07 0.65 7.27 -51.93 -0.38 0.28 16 30 H 0.05 0.73 5.40 -51.93 -0.28 0.45 16 31 H 0.10 1.88 6.10 -51.93 -0.32 1.56 16 32 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.05 1.22 5.44 -51.93 -0.28 0.94 16 34 H 0.09 2.50 6.07 -51.93 -0.32 2.19 16 35 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 37 H 0.07 0.68 7.85 -51.93 -0.41 0.28 16 38 H 0.08 0.68 7.25 -51.92 -0.38 0.31 16 39 H 0.09 1.07 7.57 -51.93 -0.39 0.68 16 LS Contribution 309.76 15.07 4.67 4.67 Total: -1.00 -32.68 309.76 -8.57 -41.25 By element: Atomic # 1 Polarization: 4.18 SS G_CDS: -6.02 Total: -1.84 kcal Atomic # 6 Polarization: -0.37 SS G_CDS: -2.28 Total: -2.65 kcal Atomic # 7 Polarization: -57.49 SS G_CDS: 0.09 Total: -57.40 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -32.68 -8.57 -41.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339649655.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.712 kcal (2) G-P(sol) polarization free energy of solvation -32.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.247 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds