Wall clock time and date at job start Sun Mar 29 2020 23:24:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36932 * 119.99930 * 2 1 4 4 H 1.08001 * 120.00222 * 322.04464 * 3 2 1 5 5 C 1.38813 * 120.00252 * 142.03950 * 3 2 1 6 6 N 1.31614 * 120.00247 * 157.02561 * 5 3 2 7 7 Si 1.86805 * 119.99661 * 337.02398 * 5 3 2 8 8 H 1.48505 * 109.46998 * 95.68053 * 7 5 3 9 9 H 1.48492 * 109.47336 * 215.67840 * 7 5 3 10 10 H 1.48496 * 109.47240 * 335.68171 * 7 5 3 11 11 C 1.46497 * 120.00205 * 180.02562 * 2 1 3 12 12 C 1.53005 * 109.47397 * 89.99561 * 11 2 1 13 13 C 1.52995 * 109.47212 * 179.97438 * 12 11 2 14 14 N 1.46500 * 109.47388 * 179.97438 * 13 12 11 15 15 C 1.34777 * 120.00258 * 180.02562 * 14 13 12 16 16 O 1.21613 * 120.00117 * 0.02562 * 15 14 13 17 17 C 1.47100 * 119.99748 * 180.02562 * 15 14 13 18 18 C 1.32613 * 124.61813 * 180.02562 * 17 15 14 19 19 C 1.51110 * 110.75796 * 179.73627 * 18 17 15 20 20 C 1.54580 * 104.84157 * 16.84139 * 19 18 17 21 21 C 1.51118 * 124.62402 * 0.16453 * 17 15 14 22 22 H 1.08998 * 109.46913 * 265.64173 * 1 2 3 23 23 H 1.08989 * 109.47626 * 25.64557 * 1 2 3 24 24 H 1.08999 * 109.47022 * 145.64993 * 1 2 3 25 25 H 0.97000 * 119.99986 * 180.02562 * 6 5 3 26 26 H 1.09000 * 109.47550 * 329.99723 * 11 2 1 27 27 H 1.09002 * 109.47132 * 209.99659 * 11 2 1 28 28 H 1.08999 * 109.47135 * 59.99775 * 12 11 2 29 29 H 1.09002 * 109.47059 * 300.00142 * 12 11 2 30 30 H 1.09008 * 109.47236 * 60.00519 * 13 12 11 31 31 H 1.08994 * 109.47433 * 300.00479 * 13 12 11 32 32 H 0.97003 * 119.99982 * 0.02562 * 14 13 12 33 33 H 1.07996 * 124.62558 * 359.97438 * 18 17 15 34 34 H 1.09006 * 110.36893 * 135.68404 * 19 18 17 35 35 H 1.09004 * 110.36766 * 258.00061 * 19 18 17 36 36 H 1.08998 * 110.97950 * 93.07381 * 20 19 18 37 37 H 1.08996 * 110.98604 * 216.86822 * 20 19 18 38 38 H 1.09002 * 110.50228 * 44.70392 * 21 17 15 39 39 H 1.08996 * 110.25858 * 282.46775 * 21 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 1.7810 2.0223 -0.5753 5 6 3.3175 1.3131 0.7394 6 7 4.2043 2.2305 0.4165 7 14 3.6304 0.1822 2.1930 8 1 4.4681 -0.9639 1.7571 9 1 4.3369 0.9334 3.2615 10 1 2.3352 -0.3219 2.7158 11 6 2.1975 -1.2687 -0.0006 12 6 2.4525 -1.7098 -1.4433 13 6 3.2181 -3.0345 -1.4438 14 7 3.4617 -3.4572 -2.8252 15 6 4.1241 -4.6047 -3.0719 16 8 4.5193 -5.2895 -2.1479 17 6 4.3692 -5.0288 -4.4590 18 6 5.0087 -6.1375 -4.8060 19 6 5.0770 -6.2680 -6.3099 20 6 4.7565 -4.8536 -6.8451 21 6 3.9291 -4.2590 -5.6827 22 1 -0.3633 -0.0781 1.0247 23 1 -0.3634 0.9263 -0.4447 24 1 -0.3633 -0.8484 -0.5799 25 1 5.0205 2.3191 0.9330 26 1 1.6085 -2.0286 0.5130 27 1 3.1500 -1.1385 0.5133 28 1 3.0415 -0.9500 -1.9569 29 1 1.5000 -1.8400 -1.9571 30 1 2.6294 -3.7946 -0.9302 31 1 4.1704 -2.9039 -0.9301 32 1 3.1462 -2.9112 -3.5623 33 1 5.4210 -6.8519 -4.1089 34 1 6.0767 -6.5731 -6.6193 35 1 4.3348 -6.9841 -6.6627 36 1 5.6700 -4.2813 -7.0067 37 1 4.1643 -4.9067 -7.7585 38 1 4.1481 -3.1976 -5.5653 39 1 2.8641 -4.4086 -5.8599 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001479765410.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:24:56 Heat of formation + Delta-G solvation = -8.788887 kcal Electronic energy + Delta-G solvation = -18259.297385 eV Core-core repulsion = 15395.468872 eV Total energy + Delta-G solvation = -2863.828513 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.95699 -37.89772 -36.45378 -34.73380 -31.85535 -30.96600 -29.47921 -28.56774 -26.36962 -25.31229 -22.42505 -21.64090 -20.86996 -20.66531 -18.68329 -17.24876 -16.76858 -15.99466 -15.71247 -15.45237 -14.95029 -14.52238 -13.94590 -13.54465 -13.23256 -13.04216 -12.93536 -12.71741 -12.24070 -12.15046 -11.89328 -11.69277 -11.50964 -11.43722 -11.33994 -11.17673 -10.90941 -10.52097 -10.40307 -9.87567 -9.75436 -9.53309 -9.18622 -8.84536 -8.51699 -6.83048 -6.01727 -3.42934 1.28392 3.31198 3.32880 3.35162 3.47882 3.53642 4.26853 4.33954 4.52264 4.71019 4.85694 4.95982 5.04620 5.33420 5.37030 5.40410 5.50026 5.51798 5.53394 5.64816 5.70353 5.85625 5.88788 6.05826 6.11831 6.18748 6.27656 6.34215 6.35633 6.52204 6.65939 6.70545 6.76809 6.92907 7.64346 8.04259 8.31790 8.36154 8.97401 9.69805 10.11262 11.13841 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.029446 B = 0.004240 C = 0.004163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.654560 B = 6601.699980 C = 6724.806730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.124 3.876 2 N -0.612 5.612 3 C -0.274 4.274 4 H 0.078 0.922 5 C 0.038 3.962 6 N -0.898 5.898 7 Si 0.875 3.125 8 H -0.284 1.284 9 H -0.300 1.300 10 H -0.270 1.270 11 C 0.143 3.857 12 C -0.146 4.146 13 C 0.117 3.883 14 N -0.719 5.719 15 C 0.560 3.440 16 O -0.548 6.548 17 C -0.190 4.190 18 C -0.080 4.080 19 C -0.106 4.106 20 C -0.123 4.123 21 C -0.093 4.093 22 H 0.006 0.994 23 H 0.045 0.955 24 H 0.026 0.974 25 H 0.264 0.736 26 H 0.040 0.960 27 H 0.055 0.945 28 H 0.076 0.924 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.401 0.599 33 H 0.137 0.863 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.144 -14.915 -13.695 20.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.021 4.021 2 N -0.336 5.336 3 C -0.402 4.402 4 H 0.096 0.904 5 C -0.163 4.163 6 N -0.539 5.539 7 Si 0.705 3.295 8 H -0.211 1.211 9 H -0.228 1.228 10 H -0.194 1.194 11 C 0.016 3.984 12 C -0.186 4.186 13 C -0.007 4.007 14 N -0.369 5.369 15 C 0.347 3.653 16 O -0.427 6.427 17 C -0.193 4.193 18 C -0.100 4.100 19 C -0.143 4.143 20 C -0.161 4.161 21 C -0.130 4.130 22 H 0.025 0.975 23 H 0.063 0.937 24 H 0.045 0.955 25 H 0.073 0.927 26 H 0.059 0.941 27 H 0.073 0.927 28 H 0.095 0.905 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.235 0.765 33 H 0.155 0.845 34 H 0.097 0.903 35 H 0.103 0.897 36 H 0.093 0.907 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -0.762 -15.250 -12.961 20.028 hybrid contribution 0.170 -0.261 0.576 0.655 sum -0.593 -15.511 -12.385 19.858 Atomic orbital electron populations 1.21078 0.84578 0.98997 0.97420 1.44037 1.00799 1.01977 1.86816 1.18791 1.06155 0.90867 1.24392 0.90430 1.25470 0.96788 0.96409 0.97642 1.69876 1.08440 1.36194 1.39424 0.86952 0.78068 0.80108 0.84358 1.21141 1.22794 1.19429 1.21033 0.96565 0.87817 0.92988 1.22386 0.99569 0.94609 1.02049 1.21491 1.00662 0.96843 0.81675 1.46022 1.57531 1.23570 1.09776 1.18015 0.77971 0.81018 0.88261 1.90782 1.51729 1.54431 1.45778 1.21903 1.04473 0.99399 0.93490 1.24024 0.93435 0.95606 0.96944 1.21476 1.02541 0.98149 0.92159 1.22427 1.00355 0.95545 0.97731 1.21268 1.00403 0.99808 0.91570 0.97543 0.93654 0.95501 0.92667 0.94122 0.92706 0.90527 0.92220 0.91815 0.91494 0.76474 0.84533 0.90301 0.89750 0.90736 0.90513 0.90526 0.90211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.48 10.70 59.85 0.64 3.12 16 2 N -0.61 -14.62 2.47 -181.13 -0.45 -15.07 16 3 C -0.27 -7.66 9.88 -15.06 -0.15 -7.81 16 4 H 0.08 2.33 8.06 -52.49 -0.42 1.90 16 5 C 0.04 1.09 5.29 -17.43 -0.09 1.00 16 6 N -0.90 -27.36 13.97 55.49 0.78 -26.58 16 7 Si 0.88 22.46 25.10 -169.99 -4.27 18.20 16 8 H -0.28 -7.09 6.68 56.52 0.38 -6.71 16 9 H -0.30 -7.79 7.11 56.52 0.40 -7.38 16 10 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 11 C 0.14 3.05 4.53 -4.04 -0.02 3.03 16 12 C -0.15 -2.62 5.65 -26.73 -0.15 -2.77 16 13 C 0.12 1.95 5.67 -4.04 -0.02 1.93 16 14 N -0.72 -10.39 5.55 -61.49 -0.34 -10.73 16 15 C 0.56 8.65 7.79 -12.67 -0.10 8.55 16 16 O -0.55 -10.53 16.77 5.27 0.09 -10.45 16 17 C -0.19 -2.23 6.10 -102.73 -0.63 -2.86 16 18 C -0.08 -0.83 10.43 -36.01 -0.38 -1.21 16 19 C -0.11 -0.76 6.80 -26.85 -0.18 -0.95 16 20 C -0.12 -0.86 7.16 -25.07 -0.18 -1.04 16 21 C -0.09 -0.81 6.01 -26.85 -0.16 -0.98 16 22 H 0.01 0.13 8.14 -51.93 -0.42 -0.30 16 23 H 0.04 0.88 8.00 -51.94 -0.42 0.47 16 24 H 0.03 0.46 8.10 -51.93 -0.42 0.03 16 25 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 26 H 0.04 0.79 8.07 -51.93 -0.42 0.37 16 27 H 0.06 1.30 3.38 -51.93 -0.18 1.13 16 28 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 29 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.06 1.04 8.14 -51.92 -0.42 0.62 16 31 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 32 H 0.40 4.78 7.49 -40.82 -0.31 4.48 16 33 H 0.14 1.45 8.03 -52.49 -0.42 1.02 16 34 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.08 0.65 7.85 -51.93 -0.41 0.24 16 39 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 319.49 15.07 4.81 4.81 Total: -1.00 -32.99 319.49 -7.17 -40.16 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: -6.38 Total: -0.37 kcal Atomic # 6 Polarization: 1.44 SS G_CDS: -1.42 Total: 0.03 kcal Atomic # 7 Polarization: -52.37 SS G_CDS: -0.01 Total: -52.38 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: 0.09 Total: -10.45 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -4.27 Total: 18.20 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -32.99 -7.17 -40.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479765410.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.375 kcal (2) G-P(sol) polarization free energy of solvation -32.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds