Wall clock time and date at job start Sun Mar 29 2020 22:52:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46506 * 109.46992 * 2 1 4 4 C 1.46499 * 119.99936 * 90.00137 * 3 2 1 5 5 C 1.53001 * 109.47147 * 89.99619 * 4 3 2 6 6 N 1.46499 * 109.47147 * 180.02562 * 5 4 3 7 7 C 1.36938 * 119.99869 * 179.97438 * 6 5 4 8 8 H 1.07997 * 120.00412 * 0.02562 * 7 6 5 9 9 C 1.38817 * 119.99537 * 179.97438 * 7 6 5 10 10 N 1.31611 * 120.00511 * 0.02562 * 9 7 6 11 11 Si 1.86806 * 119.99587 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.46807 * 90.00113 * 11 9 7 13 13 H 1.48495 * 109.47257 * 209.99902 * 11 9 7 14 14 H 1.48494 * 109.47278 * 330.00390 * 11 9 7 15 15 C 1.34773 * 119.99969 * 269.72101 * 3 2 1 16 16 O 1.21613 * 119.99880 * 180.02562 * 15 3 2 17 17 C 1.47097 * 120.00222 * 0.02562 * 15 3 2 18 18 C 1.32995 * 120.00334 * 179.97438 * 17 15 3 19 19 C 1.51407 * 136.31353 * 359.63639 * 18 17 15 20 20 C 1.53376 * 87.51849 * 206.05034 * 19 18 17 21 21 C 1.51408 * 136.31987 * 179.97438 * 18 17 15 22 22 H 1.09008 * 109.47142 * 59.99450 * 1 2 3 23 23 H 1.08992 * 109.47123 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47214 * 300.00285 * 1 2 3 25 25 H 1.09000 * 109.46884 * 240.00615 * 2 1 3 26 26 H 1.09000 * 109.46955 * 119.99931 * 2 1 3 27 27 H 1.08994 * 109.47173 * 210.00167 * 4 3 2 28 28 H 1.09005 * 109.47077 * 330.00338 * 4 3 2 29 29 H 1.09003 * 109.47272 * 300.00321 * 5 4 3 30 30 H 1.08997 * 109.47273 * 60.00010 * 5 4 3 31 31 H 0.96996 * 120.00177 * 0.02562 * 6 5 4 32 32 H 0.96996 * 120.00749 * 180.02562 * 10 9 7 33 33 H 1.08001 * 120.00182 * 359.97438 * 17 15 3 34 34 H 1.09003 * 113.56241 * 320.63149 * 19 18 17 35 35 H 1.09001 * 113.56420 * 91.36535 * 19 18 17 36 36 H 1.09000 * 113.97195 * 220.29322 * 20 19 18 37 37 H 1.09001 * 113.59629 * 88.79345 * 20 19 18 38 38 H 1.09004 * 113.55965 * 268.63161 * 21 18 17 39 39 H 1.08998 * 113.55678 * 39.35970 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0719 1.2687 5 6 3.7075 1.8314 1.7104 6 7 3.9515 2.5215 2.9795 7 6 5.1835 2.4483 3.5727 8 1 5.9754 1.8823 3.1049 9 6 5.4148 3.1027 4.7749 10 7 4.4499 3.7929 5.3448 11 14 7.0952 3.0024 5.5846 12 1 7.9460 4.1186 5.0992 13 1 6.9414 3.1020 7.0582 14 1 7.7342 1.7070 5.2400 15 6 2.2483 2.0147 -1.1672 16 8 2.6541 3.1611 -1.1671 17 6 2.0085 1.3194 -2.4411 18 6 2.2349 1.9447 -3.5928 19 6 2.7147 3.3162 -4.0182 20 6 1.9406 3.1082 -5.3258 21 6 2.1221 1.6047 -5.0639 22 1 -0.3634 0.5140 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3634 0.5139 0.8900 25 1 1.8933 -0.5137 -0.8901 26 1 1.8933 -0.5138 0.8900 27 1 2.0955 3.1410 1.1384 28 1 1.5817 1.6877 2.0284 29 1 3.8745 0.7621 1.8407 30 1 4.3883 2.2155 0.9508 31 1 3.2402 3.0296 3.3998 32 1 4.6116 4.2505 6.1847 33 1 1.6485 0.3012 -2.4411 34 1 2.3201 4.1258 -3.4041 35 1 3.7943 3.3769 -4.1559 36 1 2.4639 3.4669 -6.2121 37 1 0.9041 3.4419 -5.2770 38 1 3.0393 1.1962 -5.4883 39 1 1.2415 1.0104 -5.3074 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482916792.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:52:30 Heat of formation + Delta-G solvation = 17.666083 kcal Electronic energy + Delta-G solvation = -18329.294305 eV Core-core repulsion = 15466.612965 eV Total energy + Delta-G solvation = -2862.681340 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.93753 -38.49341 -36.01086 -34.54349 -31.92890 -30.74898 -30.22728 -27.50150 -25.91516 -24.20311 -23.54406 -22.70803 -21.43531 -19.47351 -17.77024 -17.30596 -16.95591 -16.06292 -15.60098 -15.10620 -14.45845 -14.35857 -13.94208 -13.83196 -13.44266 -13.16875 -12.88771 -12.62512 -12.55235 -12.21699 -11.98019 -11.71726 -11.27548 -11.20633 -11.05457 -10.90364 -10.84439 -10.62392 -10.59899 -10.07306 -9.71822 -9.42858 -9.25849 -8.82330 -8.38385 -6.87932 -5.71559 -3.00444 1.36674 3.15618 3.47666 3.47746 3.52483 3.54218 4.16290 4.32189 4.59027 4.65577 4.82073 4.92207 5.02205 5.17491 5.31919 5.33168 5.45972 5.50930 5.56802 5.62192 5.66214 5.70474 5.72877 5.89027 5.90491 6.05322 6.10771 6.12126 6.16692 6.22665 6.51761 6.68527 6.84296 7.01199 7.65992 7.74852 8.44804 8.48126 9.57889 10.14840 10.50114 11.51502 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.027297 B = 0.004202 C = 0.003837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.505065 B = 6662.068913 C = 7296.287325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.103 3.897 3 N -0.605 5.605 4 C 0.109 3.891 5 C 0.143 3.857 6 N -0.731 5.731 7 C -0.237 4.237 8 H 0.070 0.930 9 C -0.014 4.014 10 N -0.934 5.934 11 Si 0.908 3.092 12 H -0.289 1.289 13 H -0.291 1.291 14 H -0.282 1.282 15 C 0.547 3.453 16 O -0.535 6.535 17 C -0.196 4.196 18 C -0.068 4.068 19 C -0.106 4.106 20 C -0.143 4.143 21 C -0.107 4.107 22 H 0.056 0.944 23 H 0.065 0.935 24 H 0.060 0.940 25 H 0.078 0.922 26 H 0.083 0.917 27 H 0.084 0.916 28 H 0.075 0.925 29 H 0.017 0.983 30 H 0.023 0.977 31 H 0.384 0.616 32 H 0.255 0.745 33 H 0.133 0.867 34 H 0.087 0.913 35 H 0.097 0.903 36 H 0.076 0.924 37 H 0.083 0.917 38 H 0.099 0.901 39 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.348 -8.310 -19.884 23.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.020 4.020 3 N -0.338 5.338 4 C -0.013 4.013 5 C 0.015 3.985 6 N -0.375 5.375 7 C -0.368 4.368 8 H 0.088 0.912 9 C -0.210 4.210 10 N -0.583 5.583 11 Si 0.739 3.261 12 H -0.217 1.217 13 H -0.218 1.218 14 H -0.208 1.208 15 C 0.337 3.663 16 O -0.414 6.414 17 C -0.217 4.217 18 C -0.070 4.070 19 C -0.143 4.143 20 C -0.180 4.180 21 C -0.144 4.144 22 H 0.075 0.925 23 H 0.084 0.916 24 H 0.079 0.921 25 H 0.096 0.904 26 H 0.101 0.899 27 H 0.102 0.898 28 H 0.094 0.906 29 H 0.035 0.965 30 H 0.040 0.960 31 H 0.217 0.783 32 H 0.065 0.935 33 H 0.150 0.850 34 H 0.105 0.895 35 H 0.116 0.884 36 H 0.095 0.905 37 H 0.102 0.898 38 H 0.118 0.882 39 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -8.967 -7.747 -19.824 23.096 hybrid contribution 0.616 -0.071 0.762 0.983 sum -8.351 -7.818 -19.062 22.231 Atomic orbital electron populations 1.22222 0.96023 1.02034 1.02654 1.21596 0.94252 0.82780 1.03374 1.47811 1.65562 1.14217 1.06185 1.21660 0.97979 0.98380 0.83296 1.20909 0.92901 0.95420 0.89302 1.42218 1.12858 1.60847 1.21609 1.19219 0.89316 1.25998 1.02281 0.91224 1.24742 0.97825 1.00398 0.98059 1.69657 1.31540 1.37473 1.19618 0.86165 0.83725 0.77627 0.78540 1.21687 1.21753 1.20774 1.18409 0.77834 0.86122 0.83927 1.90795 1.45478 1.17685 1.87396 1.21745 1.08735 1.00314 0.90873 1.23455 0.92328 0.97197 0.93981 1.22214 1.00730 0.95631 0.95716 1.22731 1.01195 0.95772 0.98304 1.22339 1.02721 0.97564 0.91798 0.92530 0.91641 0.92058 0.90418 0.89907 0.89803 0.90639 0.96514 0.95951 0.78285 0.93515 0.84972 0.89465 0.88444 0.90511 0.89841 0.88236 0.90580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.58 10.24 37.16 0.38 -1.20 16 2 C 0.10 1.13 5.85 -4.04 -0.02 1.11 16 3 N -0.60 -9.19 2.47 -175.08 -0.43 -9.62 16 4 C 0.11 1.99 5.52 -4.04 -0.02 1.97 16 5 C 0.14 3.18 6.58 -4.04 -0.03 3.15 16 6 N -0.73 -19.72 5.60 -59.91 -0.34 -20.06 16 7 C -0.24 -6.98 9.99 -15.06 -0.15 -7.13 16 8 H 0.07 2.00 7.83 -52.49 -0.41 1.59 16 9 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 10 N -0.93 -29.11 13.06 55.49 0.72 -28.39 16 11 Si 0.91 23.10 29.55 -169.99 -5.02 18.08 16 12 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 13 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 14 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 15 C 0.55 8.92 7.62 -12.67 -0.10 8.82 16 16 O -0.54 -10.86 14.73 5.27 0.08 -10.78 16 17 C -0.20 -2.41 9.21 -37.81 -0.35 -2.76 16 18 C -0.07 -0.77 6.93 -100.48 -0.70 -1.47 16 19 C -0.11 -1.21 6.99 -27.56 -0.19 -1.40 16 20 C -0.14 -1.16 8.17 -26.19 -0.21 -1.38 16 21 C -0.11 -0.84 7.96 -27.39 -0.22 -1.06 16 22 H 0.06 0.53 8.14 -51.92 -0.42 0.10 16 23 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.08 0.70 6.08 -51.93 -0.32 0.38 16 26 H 0.08 0.91 8.07 -51.93 -0.42 0.49 16 27 H 0.08 1.70 7.42 -51.93 -0.39 1.31 16 28 H 0.08 1.27 8.07 -51.93 -0.42 0.85 16 29 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.38 10.71 7.67 -40.82 -0.31 10.40 16 32 H 0.26 7.64 8.31 -40.82 -0.34 7.31 16 33 H 0.13 1.23 6.22 -52.49 -0.33 0.91 16 34 H 0.09 1.18 7.49 -51.93 -0.39 0.80 16 35 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 325.89 15.07 4.91 4.91 Total: -1.00 -34.33 325.89 -8.12 -42.46 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -6.34 Total: 5.27 kcal Atomic # 6 Polarization: -0.17 SS G_CDS: -1.70 Total: -1.87 kcal Atomic # 7 Polarization: -58.02 SS G_CDS: -0.04 Total: -58.07 kcal Atomic # 8 Polarization: -10.86 SS G_CDS: 0.08 Total: -10.78 kcal Atomic # 14 Polarization: 23.10 SS G_CDS: -5.02 Total: 18.08 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -34.33 -8.12 -42.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482916792.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.125 kcal (2) G-P(sol) polarization free energy of solvation -34.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.458 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds