Wall clock time and date at job start Sun Mar 29 2020 22:52:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46502 * 109.47307 * 2 1 4 4 C 1.36940 * 119.99968 * 275.30726 * 3 2 1 5 5 H 1.08003 * 119.99632 * 37.58438 * 4 3 2 6 6 C 1.38814 * 119.99892 * 217.57724 * 4 3 2 7 7 N 1.31613 * 119.99902 * 21.43123 * 6 4 3 8 8 Si 1.86798 * 119.99611 * 201.42586 * 6 4 3 9 9 H 1.48503 * 109.46854 * 90.00249 * 8 6 4 10 10 H 1.48494 * 109.47300 * 210.00115 * 8 6 4 11 11 H 1.48494 * 109.47663 * 330.00568 * 8 6 4 12 12 C 1.46497 * 120.00029 * 95.31334 * 3 2 1 13 13 C 1.53007 * 109.46754 * 269.99990 * 12 3 2 14 14 N 1.46507 * 109.46764 * 179.97438 * 13 12 3 15 15 C 1.34777 * 119.99587 * 179.72231 * 14 13 12 16 16 O 1.21288 * 120.00015 * 0.02562 * 15 14 13 17 17 C 1.50700 * 119.99797 * 179.97438 * 15 14 13 18 18 C 1.54633 * 111.03755 * 292.02654 * 17 15 14 19 19 C 1.51101 * 104.72083 * 217.33465 * 18 17 15 20 20 C 1.30523 * 111.10919 * 16.43911 * 19 18 17 21 21 C 1.51098 * 111.10327 * 359.97438 * 20 19 18 22 22 H 1.09003 * 109.47193 * 300.00446 * 1 2 3 23 23 H 1.09001 * 109.46929 * 59.99881 * 1 2 3 24 24 H 1.08997 * 109.47184 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47262 * 240.00099 * 2 1 3 26 26 H 1.09004 * 109.47427 * 120.00217 * 2 1 3 27 27 H 0.97002 * 119.99228 * 179.97438 * 7 6 4 28 28 H 1.08993 * 109.47368 * 150.00048 * 12 3 2 29 29 H 1.08999 * 109.47535 * 29.99735 * 12 3 2 30 30 H 1.08993 * 109.47136 * 59.99915 * 13 12 3 31 31 H 1.08995 * 109.47172 * 299.99742 * 13 12 3 32 32 H 0.96999 * 120.00106 * 359.97438 * 14 13 12 33 33 H 1.09000 * 110.90991 * 56.04059 * 17 15 14 34 34 H 1.08996 * 110.39034 * 336.14331 * 18 17 15 35 35 H 1.09001 * 110.38609 * 98.52718 * 18 17 15 36 36 H 1.08004 * 124.44908 * 196.45954 * 19 18 17 37 37 H 1.07999 * 124.45265 * 180.02562 * 20 19 18 38 38 H 1.09005 * 110.38912 * 224.75726 * 21 20 19 39 39 H 1.08997 * 110.48785 * 102.42677 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1432 2.0633 -1.1809 5 1 1.4105 1.9279 -1.9627 6 6 3.2113 2.9289 -1.3728 7 7 4.3027 2.7979 -0.6491 8 14 3.0995 4.2794 -2.6585 9 1 2.5377 5.5068 -2.0395 10 1 4.4550 4.5695 -3.1909 11 1 2.2167 3.8358 -3.7671 12 6 2.3733 2.0326 1.2632 13 6 1.1426 2.7382 1.8366 14 7 1.4974 3.3892 3.1002 15 6 0.5663 4.0809 3.7865 16 8 -0.5654 4.1640 3.3583 17 6 0.9311 4.7500 5.0866 18 6 1.2382 3.7033 6.1826 19 6 0.6737 4.2989 7.4514 20 6 -0.1584 5.2687 7.1857 21 6 -0.2872 5.4821 5.6954 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8900 27 1 5.0492 3.4026 -0.7835 28 1 3.1617 2.7640 1.0859 29 1 2.7256 1.2833 1.9721 30 1 0.3542 2.0069 2.0139 31 1 0.7904 3.4876 1.1278 32 1 2.4034 3.3255 3.4410 33 1 1.7697 5.4329 4.9508 34 1 0.7448 2.7586 5.9544 35 1 2.3142 3.5575 6.2776 36 1 0.9259 3.9660 8.4474 37 1 -0.6851 5.8438 7.9329 38 1 -0.2486 6.5456 5.4593 39 1 -1.2152 5.0455 5.3263 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001492948824.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:52:40 Heat of formation + Delta-G solvation = -9.847717 kcal Electronic energy + Delta-G solvation = -18711.383435 eV Core-core repulsion = 15847.509008 eV Total energy + Delta-G solvation = -2863.874428 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.94705 -37.55922 -36.23796 -34.05769 -31.89513 -30.29376 -29.15316 -28.23132 -27.26385 -24.30266 -22.63882 -21.31138 -20.35731 -19.51742 -18.86220 -17.22327 -16.49220 -16.28940 -15.27190 -15.03241 -14.69972 -14.08684 -13.72470 -13.65666 -12.86611 -12.82461 -12.39528 -12.26906 -12.21563 -12.08034 -11.69114 -11.56067 -11.31166 -11.16109 -11.11690 -10.78748 -10.63958 -10.50201 -10.08637 -9.87160 -9.82180 -9.42147 -8.99574 -8.57225 -8.43913 -6.63682 -5.84613 -3.43499 2.13547 2.96364 3.34795 3.42462 3.44534 3.59586 4.43857 4.45744 4.56969 4.96017 5.12443 5.22271 5.27692 5.52487 5.54900 5.57440 5.70272 5.80366 5.89624 5.99455 6.10204 6.16644 6.17249 6.38150 6.38872 6.42628 6.50938 6.68495 6.75763 6.90079 6.91590 7.03032 7.16222 7.53753 7.79536 7.95939 8.47062 8.61554 9.13778 9.75582 10.33625 11.15457 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.023636 B = 0.005169 C = 0.004706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.360646 B = 5415.846356 C = 5948.370075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.141 3.859 3 N -0.580 5.580 4 C -0.261 4.261 5 H 0.062 0.938 6 C 0.014 3.986 7 N -0.888 5.888 8 Si 0.897 3.103 9 H -0.285 1.285 10 H -0.290 1.290 11 H -0.276 1.276 12 C 0.138 3.862 13 C 0.097 3.903 14 N -0.718 5.718 15 C 0.516 3.484 16 O -0.548 6.548 17 C -0.118 4.118 18 C -0.089 4.089 19 C -0.171 4.171 20 C -0.162 4.162 21 C -0.089 4.089 22 H 0.044 0.956 23 H 0.050 0.950 24 H 0.036 0.964 25 H 0.046 0.954 26 H 0.034 0.966 27 H 0.255 0.745 28 H 0.098 0.902 29 H 0.028 0.972 30 H 0.051 0.949 31 H 0.063 0.937 32 H 0.397 0.603 33 H 0.103 0.897 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.125 0.875 37 H 0.125 0.875 38 H 0.072 0.928 39 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.600 1.916 13.890 14.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.015 3.985 3 N -0.301 5.301 4 C -0.391 4.391 5 H 0.080 0.920 6 C -0.186 4.186 7 N -0.530 5.530 8 Si 0.726 3.274 9 H -0.212 1.212 10 H -0.217 1.217 11 H -0.201 1.201 12 C 0.010 3.990 13 C -0.029 4.029 14 N -0.368 5.368 15 C 0.301 3.699 16 O -0.426 6.426 17 C -0.139 4.139 18 C -0.126 4.126 19 C -0.189 4.189 20 C -0.180 4.180 21 C -0.126 4.126 22 H 0.063 0.937 23 H 0.069 0.931 24 H 0.055 0.945 25 H 0.064 0.936 26 H 0.052 0.948 27 H 0.065 0.935 28 H 0.116 0.884 29 H 0.047 0.953 30 H 0.069 0.931 31 H 0.082 0.918 32 H 0.231 0.769 33 H 0.121 0.879 34 H 0.098 0.902 35 H 0.097 0.903 36 H 0.143 0.857 37 H 0.142 0.858 38 H 0.091 0.909 39 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -4.227 2.007 13.498 14.286 hybrid contribution 0.385 0.792 -0.410 0.971 sum -3.842 2.799 13.088 13.925 Atomic orbital electron populations 1.22389 0.99924 0.99072 1.01395 1.20876 0.91758 0.86978 0.98876 1.43619 1.76054 1.08307 1.02108 1.19046 1.04776 1.21264 0.93996 0.92049 1.25177 0.94127 1.01193 0.98137 1.69995 1.03168 1.37263 1.42580 0.86383 0.76941 0.82577 0.81476 1.21229 1.21680 1.20130 1.21056 0.94588 0.96933 0.86407 1.22455 1.01015 0.96536 0.82856 1.46134 1.13203 1.52970 1.24537 1.20308 0.85357 0.78806 0.85453 1.90665 1.20769 1.61357 1.69810 1.22188 1.00423 0.98320 0.92991 1.21304 1.01494 0.98201 0.91606 1.23213 0.99407 0.97988 0.98303 1.23323 0.98914 0.98715 0.97023 1.21285 0.98744 1.00643 0.91919 0.93693 0.93109 0.94450 0.93579 0.94751 0.93517 0.88422 0.95334 0.93077 0.91836 0.76935 0.87882 0.90224 0.90344 0.85723 0.85761 0.90901 0.88707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.14 10.21 37.16 0.38 -2.77 16 2 C 0.14 2.97 6.44 -4.04 -0.03 2.94 16 3 N -0.58 -14.14 2.43 -173.23 -0.42 -14.56 16 4 C -0.26 -7.04 9.45 -15.06 -0.14 -7.18 16 5 H 0.06 1.67 7.92 -52.48 -0.42 1.26 16 6 C 0.01 0.38 4.95 -17.43 -0.09 0.29 16 7 N -0.89 -24.73 11.47 55.49 0.64 -24.09 16 8 Si 0.90 21.43 29.60 -169.99 -5.03 16.40 16 9 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 10 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 12 C 0.14 3.06 5.45 -4.04 -0.02 3.04 16 13 C 0.10 1.98 6.00 -4.03 -0.02 1.95 16 14 N -0.72 -12.04 5.56 -60.29 -0.33 -12.37 16 15 C 0.52 8.65 7.06 -10.98 -0.08 8.57 16 16 O -0.55 -11.38 15.51 5.55 0.09 -11.29 16 17 C -0.12 -1.47 3.54 -90.06 -0.32 -1.79 16 18 C -0.09 -0.94 6.37 -26.83 -0.17 -1.11 16 19 C -0.17 -1.66 10.77 -35.70 -0.38 -2.05 16 20 C -0.16 -1.63 10.78 -35.70 -0.38 -2.02 16 21 C -0.09 -1.08 6.18 -26.83 -0.17 -1.24 16 22 H 0.04 0.85 6.64 -51.93 -0.34 0.50 16 23 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 24 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 26 H 0.03 0.67 7.83 -51.93 -0.41 0.26 16 27 H 0.25 6.85 8.31 -40.82 -0.34 6.51 16 28 H 0.10 2.43 5.52 -51.93 -0.29 2.15 16 29 H 0.03 0.59 7.86 -51.93 -0.41 0.18 16 30 H 0.05 1.07 6.64 -51.93 -0.34 0.73 16 31 H 0.06 1.49 8.14 -51.93 -0.42 1.07 16 32 H 0.40 5.61 8.47 -40.82 -0.35 5.26 16 33 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.08 0.92 7.88 -51.93 -0.41 0.51 16 35 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.12 0.97 8.06 -52.48 -0.42 0.54 16 37 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 38 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.09 1.35 6.95 -51.93 -0.36 0.99 16 LS Contribution 320.18 15.07 4.83 4.83 Total: -1.00 -30.41 320.18 -7.93 -38.34 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -6.26 Total: 4.10 kcal Atomic # 6 Polarization: 0.07 SS G_CDS: -1.42 Total: -1.35 kcal Atomic # 7 Polarization: -50.90 SS G_CDS: -0.12 Total: -51.02 kcal Atomic # 8 Polarization: -11.38 SS G_CDS: 0.09 Total: -11.29 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.03 Total: 16.40 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -30.41 -7.93 -38.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001492948824.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.491 kcal (2) G-P(sol) polarization free energy of solvation -30.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds