Wall clock time and date at job start Sun Mar 29 2020 23:29:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46499 * 119.99758 * 2 1 4 4 C 1.52999 * 109.47260 * 270.00007 * 3 2 1 5 5 N 1.46498 * 109.47072 * 180.02562 * 4 3 2 6 6 C 1.36943 * 119.99727 * 180.02562 * 5 4 3 7 7 H 1.07998 * 120.00392 * 359.97438 * 6 5 4 8 8 C 1.38811 * 119.99586 * 179.97438 * 6 5 4 9 9 N 1.31618 * 120.00460 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 119.99694 * 179.97438 * 8 6 5 11 11 H 1.48506 * 109.47297 * 179.97438 * 10 8 6 12 12 H 1.48503 * 109.47261 * 60.00129 * 10 8 6 13 13 H 1.48500 * 109.47454 * 300.00122 * 10 8 6 14 14 C 1.34776 * 120.00138 * 180.02562 * 2 1 3 15 15 O 1.21279 * 120.00114 * 179.97438 * 14 2 1 16 16 C 1.50708 * 120.00003 * 0.02562 * 14 2 1 17 17 H 1.09000 * 115.52069 * 325.49589 * 16 14 2 18 18 C 1.53003 * 117.46043 * 110.95577 * 16 14 2 19 19 H 1.08997 * 119.29804 * 356.28536 * 18 16 14 20 20 C 1.56185 * 117.01278 * 200.67837 * 18 16 14 21 21 C 1.54892 * 104.25310 * 272.19448 * 20 18 16 22 22 C 1.54888 * 102.75119 * 38.32258 * 21 20 18 23 23 C 1.52996 * 117.45963 * 179.97438 * 16 14 2 24 24 H 1.09003 * 119.30172 * 3.71039 * 23 16 14 25 25 H 1.08999 * 109.47011 * 89.99920 * 1 2 3 26 26 H 1.08998 * 109.46676 * 209.99845 * 1 2 3 27 27 H 1.08999 * 109.47243 * 329.99880 * 1 2 3 28 28 H 1.09009 * 109.46775 * 150.00248 * 3 2 1 29 29 H 1.08994 * 109.47437 * 30.00460 * 3 2 1 30 30 H 1.09000 * 109.46925 * 60.00185 * 4 3 2 31 31 H 1.09007 * 109.47238 * 300.00210 * 4 3 2 32 32 H 0.96998 * 120.00095 * 359.97438 * 5 4 3 33 33 H 0.97001 * 119.99952 * 359.97438 * 9 8 6 34 34 H 1.08994 * 110.13243 * 153.65802 * 20 18 16 35 35 H 1.08997 * 110.89905 * 31.11017 * 20 18 16 36 36 H 1.09004 * 110.75383 * 280.00645 * 21 20 18 37 37 H 1.08999 * 110.91326 * 156.71715 * 21 20 18 38 38 H 1.08996 * 110.49081 * 203.37871 * 22 21 20 39 39 H 1.09001 * 110.59422 * 80.79010 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4524 1.7105 -1.4425 5 7 3.1854 2.9789 -1.4424 6 6 3.5274 3.5721 -2.6284 7 1 3.2571 3.1047 -3.5637 8 6 4.2214 4.7742 -2.6283 9 7 4.5513 5.3437 -1.4885 10 14 4.6885 5.5830 -4.2460 11 1 5.4180 6.8478 -3.9747 12 1 3.4591 5.8786 -5.0249 13 1 5.5592 4.6661 -5.0247 14 6 2.1389 -1.1672 -0.0005 15 8 3.3517 -1.1672 -0.0010 16 6 1.3854 -2.4724 -0.0017 17 1 0.4484 -2.4742 0.5552 18 6 1.4536 -3.3253 -1.2701 19 1 1.9841 -2.9429 -2.1421 20 6 0.3243 -4.3847 -1.4742 21 6 0.8486 -5.6464 -0.7446 22 6 1.5388 -5.0543 0.5092 23 6 2.2084 -3.7621 -0.0028 24 1 3.2950 -3.7016 0.0587 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3632 -0.8900 0.5138 27 1 -0.3634 0.8900 0.5138 28 1 3.1499 1.1384 0.5138 29 1 1.6084 2.0284 0.5139 30 1 1.5000 1.8408 -1.9563 31 1 3.0416 0.9508 -1.9564 32 1 3.4278 3.3989 -0.6024 33 1 4.3091 4.9235 -0.6484 34 1 0.1875 -4.5873 -2.5363 35 1 -0.6110 -4.0469 -1.0277 36 1 1.5678 -6.1807 -1.3655 37 1 0.0252 -6.3013 -0.4594 38 1 2.2882 -5.7456 0.8944 39 1 0.8025 -4.8235 1.2791 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001493512932.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:29:48 Heat of formation + Delta-G solvation = 1.391966 kcal Electronic energy + Delta-G solvation = -18426.641564 eV Core-core repulsion = 15563.254525 eV Total energy + Delta-G solvation = -2863.387038 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.52372 -38.57318 -35.93412 -34.56702 -32.16734 -31.24937 -28.42986 -28.18940 -26.52065 -24.46941 -22.95178 -21.64112 -20.84283 -19.89694 -19.01326 -17.42517 -17.24011 -16.20659 -15.53141 -15.16591 -14.97750 -14.25111 -13.76841 -13.64436 -13.45915 -13.44408 -13.09023 -12.96948 -12.76153 -12.27524 -11.68868 -11.53720 -11.43992 -11.39604 -11.14740 -10.99247 -10.61157 -10.57184 -10.30434 -10.00627 -9.96449 -9.63074 -9.20391 -8.85211 -8.52040 -6.98541 -6.07626 -3.07269 2.50222 2.97783 3.54214 3.57736 3.58668 3.75848 4.15150 4.46337 4.48618 4.70783 4.73251 4.89353 4.94726 5.04865 5.13101 5.16333 5.30051 5.38612 5.43325 5.45607 5.55527 5.64148 5.67671 5.72811 5.76090 5.78731 5.84943 5.89817 6.02602 6.04392 6.14115 6.50845 6.69613 6.86028 7.47459 7.83531 8.28719 8.78584 9.25445 10.11610 10.26137 11.41138 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.038188 B = 0.003839 C = 0.003741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.041299 B = 7292.139987 C = 7482.169288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.608 5.608 3 C 0.107 3.893 4 C 0.149 3.851 5 N -0.742 5.742 6 C -0.330 4.330 7 H 0.064 0.936 8 C -0.046 4.046 9 N -0.944 5.944 10 Si 1.082 2.918 11 H -0.284 1.284 12 H -0.295 1.295 13 H -0.295 1.295 14 C 0.539 3.461 15 O -0.533 6.533 16 C -0.162 4.162 17 H 0.120 0.880 18 C -0.137 4.137 19 H 0.118 0.882 20 C -0.094 4.094 21 C -0.124 4.124 22 C -0.096 4.096 23 C -0.134 4.134 24 H 0.121 0.879 25 H 0.058 0.942 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.083 0.917 29 H 0.076 0.924 30 H 0.019 0.981 31 H 0.023 0.977 32 H 0.367 0.633 33 H 0.255 0.745 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.072 0.928 39 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.630 -20.895 4.299 24.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.341 5.341 3 C -0.016 4.016 4 C 0.020 3.980 5 N -0.388 5.388 6 C -0.461 4.461 7 H 0.082 0.918 8 C -0.243 4.243 9 N -0.590 5.590 10 Si 0.913 3.087 11 H -0.210 1.210 12 H -0.223 1.223 13 H -0.222 1.222 14 C 0.327 3.673 15 O -0.409 6.409 16 C -0.183 4.183 17 H 0.138 0.862 18 C -0.155 4.155 19 H 0.136 0.864 20 C -0.132 4.132 21 C -0.161 4.161 22 C -0.133 4.133 23 C -0.153 4.153 24 H 0.139 0.861 25 H 0.076 0.924 26 H 0.088 0.912 27 H 0.091 0.909 28 H 0.101 0.899 29 H 0.094 0.906 30 H 0.037 0.963 31 H 0.041 0.959 32 H 0.200 0.800 33 H 0.066 0.934 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -11.284 -19.673 3.398 22.932 hybrid contribution -0.848 -1.057 0.896 1.624 sum -12.132 -20.730 4.294 24.400 Atomic orbital electron populations 1.21825 0.79560 1.02795 1.02129 1.47695 1.07004 1.06067 1.73342 1.21734 0.97444 0.83247 0.99129 1.20836 0.95014 0.88936 0.93170 1.42227 1.68202 1.22486 1.05904 1.20020 1.34383 1.05880 0.85839 0.91805 1.25816 0.98548 0.95133 1.04813 1.70878 1.49580 1.41351 0.97164 0.83220 0.75952 0.76127 0.73445 1.20963 1.22256 1.22228 1.19605 0.87352 0.84249 0.76091 1.90724 1.13798 1.87109 1.49295 1.22410 1.01670 0.90338 1.03929 0.86206 1.23676 1.00742 0.99268 0.91839 0.86414 1.22320 0.96577 0.93293 1.00980 1.22679 0.99887 0.97142 0.96399 1.21993 0.99255 0.94598 0.97460 1.23244 0.99281 0.91829 1.00944 0.86098 0.92382 0.91194 0.90927 0.89860 0.90559 0.96306 0.95931 0.80011 0.93421 0.90927 0.91140 0.91107 0.91189 0.90887 0.91315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.84 10.31 59.85 0.62 1.45 16 2 N -0.61 -9.16 2.87 -181.57 -0.52 -9.68 16 3 C 0.11 1.94 5.56 -4.04 -0.02 1.92 16 4 C 0.15 3.34 6.58 -4.04 -0.03 3.31 16 5 N -0.74 -20.08 5.60 -59.91 -0.34 -20.41 16 6 C -0.33 -9.88 9.99 -15.06 -0.15 -10.03 16 7 H 0.06 1.88 7.83 -52.49 -0.41 1.47 16 8 C -0.05 -1.39 5.50 -17.43 -0.10 -1.48 16 9 N -0.94 -30.18 13.70 55.49 0.76 -29.42 16 10 Si 1.08 26.79 29.92 -169.99 -5.09 21.71 16 11 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 12 H -0.30 -6.92 7.11 56.52 0.40 -6.52 16 13 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 14 C 0.54 8.65 7.46 -10.98 -0.08 8.57 16 15 O -0.53 -10.91 15.90 5.56 0.09 -10.82 16 16 C -0.16 -1.88 4.80 -91.77 -0.44 -2.32 16 17 H 0.12 1.09 6.44 -51.93 -0.33 0.76 16 18 C -0.14 -1.45 6.81 -88.48 -0.60 -2.06 16 19 H 0.12 1.43 8.14 -51.93 -0.42 1.01 16 20 C -0.09 -0.72 6.66 -24.03 -0.16 -0.88 16 21 C -0.12 -0.85 6.91 -24.74 -0.17 -1.02 16 22 C -0.10 -0.76 6.63 -25.06 -0.17 -0.92 16 23 C -0.13 -1.48 6.34 -89.52 -0.57 -2.04 16 24 H 0.12 1.57 7.78 -51.93 -0.40 1.16 16 25 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.07 0.55 6.00 -51.93 -0.31 0.24 16 27 H 0.07 0.69 7.89 -51.93 -0.41 0.28 16 28 H 0.08 1.67 7.42 -51.92 -0.39 1.28 16 29 H 0.08 1.25 7.89 -51.93 -0.41 0.84 16 30 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.37 9.96 6.50 -40.82 -0.27 9.69 16 33 H 0.25 8.01 6.77 -40.82 -0.28 7.73 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 318.81 15.07 4.80 4.80 Total: -1.00 -35.65 318.81 -8.39 -44.04 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: -6.23 Total: 5.29 kcal Atomic # 6 Polarization: -3.64 SS G_CDS: -1.87 Total: -5.51 kcal Atomic # 7 Polarization: -59.41 SS G_CDS: -0.10 Total: -59.51 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: 0.09 Total: -10.82 kcal Atomic # 14 Polarization: 26.79 SS G_CDS: -5.09 Total: 21.71 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -35.65 -8.39 -44.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493512932.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.432 kcal (2) G-P(sol) polarization free energy of solvation -35.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.040 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds