Wall clock time and date at job start Sun Mar 29 2020 22:52:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46493 * 109.47377 * 2 1 4 4 C 1.46505 * 119.99899 * 90.00269 * 3 2 1 5 5 C 1.52997 * 109.47212 * 270.00188 * 4 3 2 6 6 N 1.46500 * 109.47473 * 179.97438 * 5 4 3 7 7 C 1.36939 * 120.00037 * 179.97438 * 6 5 4 8 8 H 1.07993 * 120.00126 * 0.02562 * 7 6 5 9 9 C 1.38817 * 119.99653 * 179.97438 * 7 6 5 10 10 N 1.31620 * 119.99966 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 119.99758 * 179.97438 * 9 7 6 12 12 H 1.48506 * 109.46920 * 90.00220 * 11 9 7 13 13 H 1.48494 * 109.47145 * 210.00039 * 11 9 7 14 14 H 1.48493 * 109.47253 * 330.00674 * 11 9 7 15 15 C 1.34773 * 120.00646 * 270.00434 * 3 2 1 16 16 O 1.21282 * 120.00692 * 179.97438 * 15 3 2 17 17 C 1.50705 * 119.99759 * 0.02562 * 15 3 2 18 18 H 1.08997 * 115.54906 * 34.27177 * 17 15 3 19 19 C 1.53000 * 117.49837 * 248.60889 * 17 15 3 20 20 C 1.52989 * 59.99833 * 252.50664 * 19 17 15 21 21 C 1.52993 * 138.58475 * 130.88924 * 20 19 17 22 22 C 1.52990 * 138.58966 * 229.10701 * 20 19 17 23 23 H 1.09005 * 109.47212 * 179.97438 * 1 2 3 24 24 H 1.09006 * 109.46817 * 299.99710 * 1 2 3 25 25 H 1.08996 * 109.47652 * 59.99460 * 1 2 3 26 26 H 1.09006 * 109.46817 * 240.00290 * 2 1 3 27 27 H 1.08996 * 109.47652 * 120.00540 * 2 1 3 28 28 H 1.09002 * 109.47068 * 30.00248 * 4 3 2 29 29 H 1.09001 * 109.47372 * 150.00336 * 4 3 2 30 30 H 1.09002 * 109.47153 * 300.00008 * 5 4 3 31 31 H 1.08998 * 109.47533 * 59.99637 * 5 4 3 32 32 H 0.97004 * 119.99396 * 0.02562 * 6 5 4 33 33 H 0.97001 * 119.99359 * 179.97438 * 10 9 7 34 34 H 1.09005 * 117.50055 * 0.02562 * 19 17 15 35 35 H 1.08999 * 117.50318 * 144.99260 * 19 17 15 36 36 H 1.09001 * 117.49896 * 238.38073 * 21 20 19 37 37 H 1.09004 * 117.50103 * 23.40960 * 21 20 19 38 38 H 1.09005 * 117.49604 * 336.59349 * 22 20 19 39 39 H 1.08997 * 117.50400 * 121.59578 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.2626 2.0717 1.2688 5 6 0.9877 2.7930 1.7106 6 7 1.2317 3.4830 2.9796 7 6 0.2278 4.2014 3.5724 8 1 -0.7438 4.2590 3.1046 9 6 0.4590 4.8548 4.7752 10 7 1.6431 4.7843 5.3455 11 14 -0.9102 5.8354 5.5835 12 1 -1.6789 4.9521 6.4967 13 1 -0.3238 6.9583 6.3583 14 1 -1.8162 6.3751 4.5381 15 6 2.2429 2.0166 -1.1671 16 8 2.6468 3.1602 -1.1671 17 6 1.9911 1.3065 -2.4723 18 1 1.1558 0.6063 -2.4730 19 6 3.2073 0.9560 -3.3319 20 6 2.2649 2.0816 -3.7626 21 6 2.3527 3.5354 -4.2310 22 6 1.5084 2.5287 -5.0150 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 2.5507 1.3450 2.0284 29 1 3.0645 2.7984 1.1385 30 1 0.6995 3.5197 0.9510 31 1 0.1857 2.0664 1.8409 32 1 2.1046 3.4316 3.3995 33 1 1.8046 5.2412 6.1857 34 1 4.1896 1.2387 -2.9533 35 1 3.1721 0.0253 -3.8982 36 1 1.8241 4.2863 -3.6437 37 1 3.2901 3.8638 -4.6800 38 1 1.8904 2.1947 -5.9797 39 1 0.4243 2.6168 -4.9436 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001497461424.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:52:33 Heat of formation + Delta-G solvation = 37.695617 kcal Electronic energy + Delta-G solvation = -18586.100926 eV Core-core repulsion = 15724.288132 eV Total energy + Delta-G solvation = -2861.812794 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.12634 -37.77677 -36.01245 -34.50562 -32.74764 -31.54529 -30.29837 -27.83186 -24.73731 -23.48035 -22.61862 -22.47847 -21.29213 -19.92337 -18.44882 -17.29757 -16.99965 -15.85016 -15.33505 -15.09125 -14.64163 -14.49297 -14.10690 -13.83422 -13.26882 -13.21826 -13.01053 -12.81356 -12.47050 -11.92862 -11.71732 -11.54727 -11.28349 -11.13097 -10.92196 -10.83120 -10.57201 -10.32477 -10.17304 -10.09496 -10.07457 -9.73372 -9.47938 -8.82925 -8.46314 -6.89009 -5.72894 -3.01778 2.59403 3.02839 3.46385 3.51302 3.53637 3.62256 3.67074 4.16511 4.53860 4.64424 4.66952 4.87444 4.97163 5.20962 5.29030 5.35576 5.39904 5.48739 5.49898 5.54710 5.56255 5.68929 5.70897 5.78252 5.81605 5.86174 5.88929 6.10172 6.10580 6.11400 6.28184 6.66477 6.84044 6.97813 7.59236 7.73402 8.39686 8.46147 9.56589 10.13343 10.48518 11.50150 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.028356 B = 0.004439 C = 0.004192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.213838 B = 6305.531867 C = 6678.096479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.107 3.893 3 N -0.606 5.606 4 C 0.108 3.892 5 C 0.143 3.857 6 N -0.731 5.731 7 C -0.237 4.237 8 H 0.069 0.931 9 C -0.014 4.014 10 N -0.934 5.934 11 Si 0.908 3.092 12 H -0.290 1.290 13 H -0.291 1.291 14 H -0.282 1.282 15 C 0.538 3.462 16 O -0.527 6.527 17 C -0.139 4.139 18 H 0.123 0.877 19 C -0.102 4.102 20 C -0.202 4.202 21 C -0.113 4.113 22 C -0.131 4.131 23 H 0.064 0.936 24 H 0.070 0.930 25 H 0.055 0.945 26 H 0.076 0.924 27 H 0.080 0.920 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.021 0.979 31 H 0.021 0.979 32 H 0.384 0.616 33 H 0.255 0.745 34 H 0.100 0.900 35 H 0.104 0.896 36 H 0.101 0.899 37 H 0.096 0.904 38 H 0.097 0.903 39 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.231 -12.556 -18.766 22.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.016 4.016 3 N -0.339 5.339 4 C -0.014 4.014 5 C 0.014 3.986 6 N -0.376 5.376 7 C -0.368 4.368 8 H 0.087 0.913 9 C -0.210 4.210 10 N -0.583 5.583 11 Si 0.739 3.261 12 H -0.217 1.217 13 H -0.217 1.217 14 H -0.208 1.208 15 C 0.326 3.674 16 O -0.403 6.403 17 C -0.160 4.160 18 H 0.141 0.859 19 C -0.139 4.139 20 C -0.202 4.202 21 C -0.150 4.150 22 C -0.168 4.168 23 H 0.083 0.917 24 H 0.089 0.911 25 H 0.074 0.926 26 H 0.095 0.905 27 H 0.099 0.901 28 H 0.094 0.906 29 H 0.102 0.898 30 H 0.039 0.961 31 H 0.038 0.962 32 H 0.217 0.783 33 H 0.065 0.935 34 H 0.119 0.881 35 H 0.122 0.878 36 H 0.120 0.880 37 H 0.114 0.886 38 H 0.115 0.885 39 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 1.300 -11.855 -18.716 22.193 hybrid contribution -0.631 0.396 0.807 1.099 sum 0.668 -11.459 -17.909 21.272 Atomic orbital electron populations 1.22339 0.95865 1.02066 1.03319 1.21566 0.94667 0.82436 1.02971 1.47881 1.65875 1.14070 1.06047 1.21711 0.99675 0.96839 0.83183 1.20985 0.94133 0.94222 0.89254 1.42231 1.13703 1.60003 1.21621 1.19207 0.92283 1.23056 1.02274 0.91258 1.24741 0.96947 1.01248 0.98053 1.69665 1.20986 1.48085 1.19523 0.86168 0.81103 0.79576 0.79238 1.21716 1.21710 1.20766 1.19651 0.77457 0.86167 0.84156 1.90722 1.45100 1.17370 1.87063 1.22043 1.02160 1.02691 0.89118 0.85889 1.22640 0.93870 0.97659 0.99770 1.21140 1.05371 0.97772 0.95936 1.22601 1.01319 0.90324 1.00741 1.22753 0.98472 1.02261 0.93273 0.91726 0.91114 0.92633 0.90520 0.90145 0.90555 0.89843 0.96113 0.96174 0.78301 0.93511 0.88142 0.87760 0.88043 0.88596 0.88480 0.88592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.87 10.12 37.16 0.38 -1.50 16 2 C 0.11 1.14 5.80 -4.05 -0.02 1.11 16 3 N -0.61 -8.97 2.47 -173.69 -0.43 -9.40 16 4 C 0.11 1.95 5.56 -4.04 -0.02 1.92 16 5 C 0.14 3.12 6.58 -4.04 -0.03 3.09 16 6 N -0.73 -19.59 5.60 -59.91 -0.34 -19.93 16 7 C -0.24 -6.94 9.99 -15.06 -0.15 -7.09 16 8 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16 9 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 10 N -0.93 -29.00 13.06 55.49 0.72 -28.28 16 11 Si 0.91 23.04 29.55 -169.99 -5.02 18.02 16 12 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 13 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 14 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 15 C 0.54 8.57 7.46 -10.98 -0.08 8.49 16 16 O -0.53 -10.66 15.82 5.56 0.09 -10.57 16 17 C -0.14 -1.64 4.80 -91.77 -0.44 -2.08 16 18 H 0.12 1.20 6.48 -51.93 -0.34 0.86 16 19 C -0.10 -1.00 10.23 -26.74 -0.27 -1.28 16 20 C -0.20 -2.32 5.05 -154.53 -0.78 -3.10 16 21 C -0.11 -1.32 10.16 -26.73 -0.27 -1.59 16 22 C -0.13 -1.22 10.53 -26.73 -0.28 -1.50 16 23 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.07 0.92 6.26 -51.93 -0.33 0.60 16 25 H 0.05 0.59 7.45 -51.93 -0.39 0.20 16 26 H 0.08 0.63 6.64 -51.93 -0.34 0.29 16 27 H 0.08 0.79 7.89 -51.93 -0.41 0.38 16 28 H 0.08 1.25 7.89 -51.93 -0.41 0.84 16 29 H 0.08 1.67 7.42 -51.93 -0.39 1.28 16 30 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.02 0.43 6.26 -51.93 -0.33 0.11 16 32 H 0.38 10.65 7.67 -40.82 -0.31 10.33 16 33 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 34 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.10 1.36 8.14 -51.93 -0.42 0.93 16 37 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 324.88 15.07 4.90 4.90 Total: -1.00 -34.29 324.88 -8.32 -42.61 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: -6.16 Total: 6.69 kcal Atomic # 6 Polarization: -1.96 SS G_CDS: -2.07 Total: -4.03 kcal Atomic # 7 Polarization: -57.56 SS G_CDS: -0.04 Total: -57.61 kcal Atomic # 8 Polarization: -10.66 SS G_CDS: 0.09 Total: -10.57 kcal Atomic # 14 Polarization: 23.04 SS G_CDS: -5.02 Total: 18.02 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -34.29 -8.32 -42.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497461424.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.303 kcal (2) G-P(sol) polarization free energy of solvation -34.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.608 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds