Wall clock time and date at job start Sun Mar 29 2020 22:52:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46493 * 109.47377 * 2 1 4 4 C 1.46505 * 119.99899 * 90.00269 * 3 2 1 5 5 C 1.52997 * 109.47212 * 270.00188 * 4 3 2 6 6 N 1.46500 * 109.47473 * 179.97438 * 5 4 3 7 7 C 1.36939 * 120.00037 * 179.97438 * 6 5 4 8 8 H 1.07993 * 120.00126 * 0.02562 * 7 6 5 9 9 C 1.38817 * 119.99653 * 179.97438 * 7 6 5 10 10 N 1.31620 * 119.99966 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 119.99758 * 179.97438 * 9 7 6 12 12 H 1.48506 * 109.46920 * 90.00220 * 11 9 7 13 13 H 1.48494 * 109.47145 * 210.00039 * 11 9 7 14 14 H 1.48493 * 109.47253 * 330.00674 * 11 9 7 15 15 C 1.34773 * 120.00646 * 270.00434 * 3 2 1 16 16 O 1.21282 * 120.00692 * 179.97438 * 15 3 2 17 17 C 1.50705 * 119.99759 * 0.02562 * 15 3 2 18 18 H 1.08997 * 115.54906 * 34.27177 * 17 15 3 19 19 C 1.53000 * 117.49837 * 248.60889 * 17 15 3 20 20 C 1.52989 * 59.99833 * 252.50664 * 19 17 15 21 21 C 1.52993 * 138.58475 * 130.88924 * 20 19 17 22 22 C 1.52990 * 138.58966 * 229.10701 * 20 19 17 23 23 H 1.09005 * 109.47212 * 179.97438 * 1 2 3 24 24 H 1.09006 * 109.46817 * 299.99710 * 1 2 3 25 25 H 1.08996 * 109.47652 * 59.99460 * 1 2 3 26 26 H 1.09006 * 109.46817 * 240.00290 * 2 1 3 27 27 H 1.08996 * 109.47652 * 120.00540 * 2 1 3 28 28 H 1.09002 * 109.47068 * 30.00248 * 4 3 2 29 29 H 1.09001 * 109.47372 * 150.00336 * 4 3 2 30 30 H 1.09002 * 109.47153 * 300.00008 * 5 4 3 31 31 H 1.08998 * 109.47533 * 59.99637 * 5 4 3 32 32 H 0.97004 * 119.99396 * 0.02562 * 6 5 4 33 33 H 0.97001 * 119.99359 * 179.97438 * 10 9 7 34 34 H 1.09005 * 117.50055 * 0.02562 * 19 17 15 35 35 H 1.08999 * 117.50318 * 144.99260 * 19 17 15 36 36 H 1.09001 * 117.49896 * 238.38073 * 21 20 19 37 37 H 1.09004 * 117.50103 * 23.40960 * 21 20 19 38 38 H 1.09005 * 117.49604 * 336.59349 * 22 20 19 39 39 H 1.08997 * 117.50400 * 121.59578 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.2626 2.0717 1.2688 5 6 0.9877 2.7930 1.7106 6 7 1.2317 3.4830 2.9796 7 6 0.2278 4.2014 3.5724 8 1 -0.7438 4.2590 3.1046 9 6 0.4590 4.8548 4.7752 10 7 1.6431 4.7843 5.3455 11 14 -0.9102 5.8354 5.5835 12 1 -1.6789 4.9521 6.4967 13 1 -0.3238 6.9583 6.3583 14 1 -1.8162 6.3751 4.5381 15 6 2.2429 2.0166 -1.1671 16 8 2.6468 3.1602 -1.1671 17 6 1.9911 1.3065 -2.4723 18 1 1.1558 0.6063 -2.4730 19 6 3.2073 0.9560 -3.3319 20 6 2.2649 2.0816 -3.7626 21 6 2.3527 3.5354 -4.2310 22 6 1.5084 2.5287 -5.0150 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 2.5507 1.3450 2.0284 29 1 3.0645 2.7984 1.1385 30 1 0.6995 3.5197 0.9510 31 1 0.1857 2.0664 1.8409 32 1 2.1046 3.4316 3.3995 33 1 1.8046 5.2412 6.1857 34 1 4.1896 1.2387 -2.9533 35 1 3.1721 0.0253 -3.8982 36 1 1.8241 4.2863 -3.6437 37 1 3.2901 3.8638 -4.6800 38 1 1.8904 2.1947 -5.9797 39 1 0.4243 2.6168 -4.9436 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001497461424.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:52:33 Heat of formation + Delta-G solvation = 15.606231 kcal Electronic energy + Delta-G solvation = -18587.058793 eV Core-core repulsion = 15724.288132 eV Total energy + Delta-G solvation = -2862.770662 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.28798 -38.75070 -37.40074 -36.34864 -33.87278 -33.23983 -31.58704 -29.50088 -26.29699 -24.97470 -23.73035 -23.28654 -22.93624 -20.91337 -19.54756 -19.21918 -18.27572 -17.13072 -16.75869 -16.27884 -15.88636 -15.71101 -15.54394 -15.21874 -14.99554 -14.80565 -14.43471 -13.89811 -13.51755 -13.20613 -12.96015 -12.80605 -12.61332 -12.59987 -12.38536 -12.35159 -12.15448 -11.97992 -11.82018 -11.17936 -11.04472 -10.97603 -10.92009 -10.70689 -9.75570 -9.09827 -8.00818 -5.32035 1.42896 1.45141 1.46831 1.55440 1.88752 2.52709 2.74113 2.80176 3.32166 3.33520 3.58407 3.83671 3.97658 4.01998 4.13663 4.16983 4.22300 4.42572 4.49054 4.50324 4.59779 4.61318 4.74343 4.76923 4.81037 4.82180 4.92988 5.01296 5.02067 5.05666 5.10810 5.26894 5.39746 5.43759 5.57424 6.20630 6.42447 7.18214 7.26585 7.97618 8.23868 9.22630 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.028356 B = 0.004439 C = 0.004192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.213838 B = 6305.531867 C = 6678.096479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.100 3.900 3 N -0.603 5.603 4 C 0.122 3.878 5 C 0.151 3.849 6 N -0.743 5.743 7 C -0.254 4.254 8 H 0.071 0.929 9 C -0.071 4.071 10 N -0.967 5.967 11 Si 0.979 3.021 12 H -0.279 1.279 13 H -0.291 1.291 14 H -0.273 1.273 15 C 0.528 3.472 16 O -0.584 6.584 17 C -0.145 4.145 18 H 0.151 0.849 19 C -0.078 4.078 20 C -0.228 4.228 21 C -0.141 4.141 22 C -0.099 4.099 23 H 0.095 0.905 24 H 0.039 0.961 25 H 0.053 0.947 26 H 0.112 0.888 27 H 0.093 0.907 28 H 0.096 0.904 29 H 0.056 0.944 30 H -0.008 1.008 31 H 0.034 0.966 32 H 0.375 0.625 33 H 0.254 0.746 34 H 0.088 0.912 35 H 0.144 0.856 36 H 0.070 0.930 37 H 0.102 0.898 38 H 0.124 0.876 39 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.261 -14.936 -20.262 25.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.021 4.021 3 N -0.335 5.335 4 C -0.002 4.002 5 C 0.023 3.977 6 N -0.387 5.387 7 C -0.385 4.385 8 H 0.089 0.911 9 C -0.264 4.264 10 N -0.617 5.617 11 Si 0.807 3.193 12 H -0.206 1.206 13 H -0.218 1.218 14 H -0.198 1.198 15 C 0.318 3.682 16 O -0.464 6.464 17 C -0.166 4.166 18 H 0.169 0.831 19 C -0.115 4.115 20 C -0.229 4.229 21 C -0.178 4.178 22 C -0.136 4.136 23 H 0.114 0.886 24 H 0.058 0.942 25 H 0.072 0.928 26 H 0.130 0.870 27 H 0.111 0.889 28 H 0.114 0.886 29 H 0.074 0.926 30 H 0.010 0.990 31 H 0.051 0.949 32 H 0.207 0.793 33 H 0.063 0.937 34 H 0.107 0.893 35 H 0.162 0.838 36 H 0.089 0.911 37 H 0.120 0.880 38 H 0.143 0.857 39 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 0.302 -14.293 -20.243 24.782 hybrid contribution -0.325 1.130 1.239 1.708 sum -0.023 -13.163 -19.004 23.117 Atomic orbital electron populations 1.22302 0.95652 1.03581 1.01645 1.21935 0.94759 0.80021 1.05375 1.48000 1.65434 1.15502 1.04524 1.21344 0.96637 0.96777 0.85425 1.21011 0.96553 0.93544 0.86566 1.42415 1.12930 1.60382 1.22960 1.19574 0.92880 1.23381 1.02692 0.91106 1.25632 0.99508 1.02518 0.98710 1.69822 1.23004 1.49069 1.19849 0.85074 0.78181 0.77878 0.78205 1.20594 1.21762 1.19795 1.20535 0.76169 0.85728 0.85740 1.90696 1.47693 1.20025 1.87961 1.22058 1.04473 1.03336 0.86706 0.83116 1.22779 0.92283 0.98331 0.98068 1.21456 1.06978 0.97731 0.96699 1.22568 1.02374 0.90515 1.02347 1.22838 0.98405 0.98983 0.93345 0.88584 0.94205 0.92814 0.86999 0.88895 0.88601 0.92572 0.98983 0.94852 0.79264 0.93698 0.89306 0.83808 0.91137 0.88009 0.85746 0.88078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.24 10.12 71.98 0.73 -2.51 16 2 C 0.10 1.86 5.80 86.38 0.50 2.36 16 3 N -0.60 -17.54 2.47 -821.82 -2.03 -19.57 16 4 C 0.12 4.49 5.56 86.38 0.48 4.97 16 5 C 0.15 6.82 6.58 86.38 0.57 7.39 16 6 N -0.74 -41.07 5.60 -343.46 -1.92 -42.99 16 7 C -0.25 -15.13 9.99 84.03 0.84 -14.29 16 8 H 0.07 4.10 7.83 -2.91 -0.02 4.08 16 9 C -0.07 -4.26 5.50 84.86 0.47 -3.79 16 10 N -0.97 -61.07 13.06 21.65 0.28 -60.78 16 11 Si 0.98 47.64 29.55 68.60 2.03 49.67 16 12 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 13 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 14 H -0.27 -12.75 7.11 99.48 0.71 -12.05 16 15 C 0.53 16.87 7.46 87.66 0.65 17.53 16 16 O -0.58 -24.92 15.82 -3.04 -0.05 -24.96 16 17 C -0.15 -3.12 4.80 -11.54 -0.06 -3.17 16 18 H 0.15 2.36 6.48 -2.39 -0.02 2.34 16 19 C -0.08 -1.29 10.23 30.59 0.31 -0.98 16 20 C -0.23 -4.87 5.05 -52.19 -0.26 -5.13 16 21 C -0.14 -3.33 10.16 30.59 0.31 -3.02 16 22 C -0.10 -1.62 10.53 30.59 0.32 -1.30 16 23 H 0.10 1.21 8.14 -2.38 -0.02 1.19 16 24 H 0.04 0.99 6.26 -2.38 -0.01 0.97 16 25 H 0.05 1.02 7.45 -2.39 -0.02 1.00 16 26 H 0.11 1.35 6.64 -2.38 -0.02 1.34 16 27 H 0.09 1.53 7.89 -2.39 -0.02 1.52 16 28 H 0.10 3.13 7.89 -2.39 -0.02 3.11 16 29 H 0.06 2.37 7.42 -2.39 -0.02 2.36 16 30 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 31 H 0.03 1.44 6.26 -2.39 -0.01 1.43 16 32 H 0.38 21.60 7.67 -92.71 -0.71 20.89 16 33 H 0.25 15.39 8.31 -92.71 -0.77 14.62 16 34 H 0.09 1.70 8.14 -2.38 -0.02 1.68 16 35 H 0.14 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 37 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 38 H 0.12 1.37 8.14 -2.38 -0.02 1.35 16 39 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 Total: -1.00 -77.47 324.88 3.50 -73.97 By element: Atomic # 1 Polarization: 26.27 SS G_CDS: 0.33 Total: 26.59 kcal Atomic # 6 Polarization: -6.80 SS G_CDS: 4.87 Total: -1.94 kcal Atomic # 7 Polarization: -119.67 SS G_CDS: -3.67 Total: -123.34 kcal Atomic # 8 Polarization: -24.92 SS G_CDS: -0.05 Total: -24.96 kcal Atomic # 14 Polarization: 47.64 SS G_CDS: 2.03 Total: 49.67 kcal Total: -77.47 3.50 -73.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497461424.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.581 kcal (2) G-P(sol) polarization free energy of solvation -77.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.975 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds