Wall clock time and date at job start Sun Mar 29 2020 22:52:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46495 * 109.47088 * 2 1 4 4 C 1.46498 * 120.00484 * 270.00140 * 3 2 1 5 5 C 1.52998 * 109.47270 * 270.00657 * 4 3 2 6 6 N 1.46506 * 109.47014 * 180.02562 * 5 4 3 7 7 C 1.36939 * 119.99937 * 179.97438 * 6 5 4 8 8 H 1.08002 * 119.99768 * 359.97438 * 7 6 5 9 9 C 1.38805 * 119.99944 * 179.97438 * 7 6 5 10 10 N 1.31612 * 120.00328 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 119.99818 * 180.02562 * 9 7 6 12 12 H 1.48494 * 109.47608 * 359.97438 * 11 9 7 13 13 H 1.48501 * 109.47297 * 120.00375 * 11 9 7 14 14 H 1.48502 * 109.46923 * 240.00030 * 11 9 7 15 15 C 1.34776 * 119.99694 * 90.00498 * 3 2 1 16 16 O 1.21285 * 119.99966 * 179.97438 * 15 3 2 17 17 C 1.50700 * 120.00179 * 359.97438 * 15 3 2 18 18 H 1.09002 * 115.54929 * 325.58264 * 17 15 3 19 19 C 1.53005 * 117.49884 * 111.25245 * 17 15 3 20 20 C 1.52991 * 117.51795 * 179.88115 * 17 15 3 21 21 C 1.52999 * 138.58936 * 121.62676 * 20 17 15 22 22 C 1.52997 * 138.59273 * 23.40835 * 20 17 15 23 23 H 1.09000 * 109.46705 * 299.99432 * 1 2 3 24 24 H 1.08991 * 109.47065 * 59.99331 * 1 2 3 25 25 H 1.09001 * 109.47253 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46705 * 240.00568 * 2 1 3 27 27 H 1.09001 * 109.47154 * 120.00779 * 2 1 3 28 28 H 1.09000 * 109.46745 * 30.00488 * 4 3 2 29 29 H 1.09001 * 109.47143 * 149.99752 * 4 3 2 30 30 H 1.09000 * 109.47099 * 299.99615 * 5 4 3 31 31 H 1.09001 * 109.47777 * 59.99483 * 5 4 3 32 32 H 0.96994 * 119.99860 * 359.97438 * 6 5 4 33 33 H 0.96997 * 120.00575 * 179.97438 * 10 9 7 34 34 H 1.08999 * 117.49794 * 215.00206 * 19 17 15 35 35 H 1.08992 * 117.49816 * 0.02572 * 19 17 15 36 36 H 1.09000 * 117.49553 * 336.59303 * 21 20 17 37 37 H 1.08999 * 117.49974 * 121.61182 * 21 20 17 38 38 H 1.08996 * 117.50213 * 238.38591 * 22 20 17 39 39 H 1.09006 * 117.49128 * 23.40707 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.7074 1.8314 -1.7104 6 7 3.9517 2.5227 -2.9789 7 6 5.1841 2.4506 -3.5716 8 1 5.9760 1.8846 -3.1038 9 6 5.4154 3.1051 -4.7736 10 7 4.4502 3.7945 -5.3439 11 14 7.0963 3.0062 -5.5825 12 1 7.9998 2.1755 -4.7467 13 1 6.9627 2.3927 -6.9282 14 1 7.6627 4.3725 -5.7154 15 6 2.2430 2.0164 1.1672 16 8 2.6478 3.1597 1.1673 17 6 1.9914 1.3061 2.4723 18 1 1.1546 0.6077 2.4737 19 6 3.2080 0.9527 3.3303 20 6 2.2681 2.0797 3.7629 21 6 1.5139 2.5272 5.0166 22 6 2.3592 3.5330 4.2326 23 1 -0.3633 0.5138 0.8901 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5140 0.8899 28 1 1.5816 1.6878 -2.0283 29 1 2.0955 3.1411 -1.1382 30 1 4.3883 2.2154 -0.9508 31 1 3.8745 0.7622 -1.8409 32 1 3.2406 3.0314 -3.3987 33 1 4.6119 4.2522 -6.1837 34 1 3.1715 0.0218 3.8961 35 1 4.1902 1.2343 2.9510 36 1 0.4299 2.6177 4.9464 37 1 1.8963 2.1916 5.9806 38 1 3.2976 3.8592 4.6807 39 1 1.8312 4.2853 3.6464 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001497461433.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:52:36 Heat of formation + Delta-G solvation = 36.655140 kcal Electronic energy + Delta-G solvation = -18505.608205 eV Core-core repulsion = 15643.750292 eV Total energy + Delta-G solvation = -2861.857912 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.11839 -37.76597 -35.98457 -34.56612 -32.74582 -31.64902 -30.25721 -27.78807 -24.64413 -23.61375 -22.68328 -22.49356 -21.37570 -19.79375 -18.38908 -17.28282 -16.96172 -16.00530 -15.23182 -15.06939 -14.89320 -14.35849 -14.03474 -13.88300 -13.48419 -13.22159 -12.92178 -12.83653 -12.45297 -11.90410 -11.74843 -11.57161 -11.24345 -11.21344 -10.95969 -10.85965 -10.65317 -10.31469 -10.19331 -10.08850 -10.04965 -9.74353 -9.48007 -8.84598 -8.45426 -6.89717 -5.73201 -3.02237 2.61009 3.00333 3.46144 3.51527 3.54056 3.61836 3.68712 4.16895 4.53905 4.64490 4.67191 4.85811 4.93872 5.14474 5.28348 5.33382 5.39936 5.46817 5.51443 5.54323 5.56526 5.65751 5.69046 5.70228 5.84777 5.85425 5.87318 6.07475 6.07574 6.11026 6.19555 6.63437 6.79605 6.97272 7.59433 7.73754 8.39702 8.45731 9.56299 10.12893 10.48105 11.49898 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.027751 B = 0.004390 C = 0.004066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.725738 B = 6377.129428 C = 6884.592559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.104 3.896 3 N -0.605 5.605 4 C 0.109 3.891 5 C 0.144 3.856 6 N -0.731 5.731 7 C -0.237 4.237 8 H 0.070 0.930 9 C -0.014 4.014 10 N -0.934 5.934 11 Si 0.908 3.092 12 H -0.280 1.280 13 H -0.291 1.291 14 H -0.291 1.291 15 C 0.538 3.462 16 O -0.527 6.527 17 C -0.139 4.139 18 H 0.123 0.877 19 C -0.101 4.101 20 C -0.202 4.202 21 C -0.131 4.131 22 C -0.113 4.113 23 H 0.054 0.946 24 H 0.061 0.939 25 H 0.066 0.934 26 H 0.083 0.917 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.022 0.978 31 H 0.017 0.983 32 H 0.384 0.616 33 H 0.255 0.745 34 H 0.105 0.895 35 H 0.102 0.898 36 H 0.095 0.905 37 H 0.097 0.903 38 H 0.096 0.904 39 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.269 -8.907 18.806 22.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.020 4.020 3 N -0.338 5.338 4 C -0.014 4.014 5 C 0.015 3.985 6 N -0.375 5.375 7 C -0.368 4.368 8 H 0.088 0.912 9 C -0.210 4.210 10 N -0.582 5.582 11 Si 0.739 3.261 12 H -0.206 1.206 13 H -0.218 1.218 14 H -0.218 1.218 15 C 0.325 3.675 16 O -0.403 6.403 17 C -0.160 4.160 18 H 0.140 0.860 19 C -0.138 4.138 20 C -0.202 4.202 21 C -0.168 4.168 22 C -0.150 4.150 23 H 0.074 0.926 24 H 0.080 0.920 25 H 0.085 0.915 26 H 0.102 0.898 27 H 0.096 0.904 28 H 0.094 0.906 29 H 0.102 0.898 30 H 0.040 0.960 31 H 0.035 0.965 32 H 0.217 0.783 33 H 0.064 0.936 34 H 0.123 0.877 35 H 0.121 0.879 36 H 0.113 0.887 37 H 0.115 0.885 38 H 0.115 0.885 39 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -8.876 -8.334 18.757 22.362 hybrid contribution 0.581 -0.023 -0.819 1.004 sum -8.295 -8.357 17.938 21.457 Atomic orbital electron populations 1.22234 0.96079 1.02117 1.02590 1.21574 0.94172 0.82720 1.03499 1.47866 1.65723 1.14204 1.06043 1.21677 0.98056 0.98357 0.83277 1.20902 0.92824 0.95436 0.89327 1.42226 1.12879 1.60749 1.21690 1.19259 0.89282 1.25956 1.02291 0.91163 1.24741 0.97845 1.00380 0.98055 1.69668 1.31501 1.37514 1.19560 0.86095 0.83620 0.77234 0.79130 1.20560 1.21845 1.21817 1.19665 0.77404 0.86233 0.84165 1.90723 1.44797 1.17687 1.87060 1.22033 1.02249 1.02654 0.89093 0.85970 1.22662 0.94043 0.97570 0.99575 1.21146 1.05477 0.97790 0.95829 1.22750 0.98347 1.02341 0.93354 1.22590 1.01335 0.90331 1.00723 0.92648 0.92003 0.91539 0.89824 0.90381 0.90589 0.89837 0.96008 0.96470 0.78287 0.93553 0.87707 0.87945 0.88689 0.88471 0.88548 0.88168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.54 10.12 37.16 0.38 -1.16 16 2 C 0.10 1.10 5.76 -4.04 -0.02 1.08 16 3 N -0.61 -8.96 2.47 -173.69 -0.43 -9.39 16 4 C 0.11 1.95 5.52 -4.04 -0.02 1.93 16 5 C 0.14 3.15 6.58 -4.04 -0.03 3.12 16 6 N -0.73 -19.59 5.60 -59.91 -0.34 -19.92 16 7 C -0.24 -6.93 9.99 -15.06 -0.15 -7.08 16 8 H 0.07 2.01 7.83 -52.49 -0.41 1.60 16 9 C -0.01 -0.43 5.50 -17.44 -0.10 -0.52 16 10 N -0.93 -29.00 13.06 55.49 0.72 -28.27 16 11 Si 0.91 23.02 29.55 -169.99 -5.02 17.99 16 12 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 13 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 14 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 15 C 0.54 8.55 7.46 -10.99 -0.08 8.47 16 16 O -0.53 -10.65 15.83 5.55 0.09 -10.57 16 17 C -0.14 -1.64 4.79 -91.77 -0.44 -2.08 16 18 H 0.12 1.14 6.48 -51.93 -0.34 0.80 16 19 C -0.10 -1.06 10.23 -26.73 -0.27 -1.33 16 20 C -0.20 -2.32 5.05 -154.52 -0.78 -3.10 16 21 C -0.13 -1.18 10.53 -26.73 -0.28 -1.46 16 22 C -0.11 -1.29 10.16 -26.73 -0.27 -1.57 16 23 H 0.05 0.49 7.45 -51.93 -0.39 0.10 16 24 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.08 0.90 8.07 -51.93 -0.42 0.48 16 27 H 0.08 0.68 6.64 -51.93 -0.35 0.34 16 28 H 0.08 1.26 8.07 -51.93 -0.42 0.84 16 29 H 0.08 1.67 7.42 -51.93 -0.39 1.29 16 30 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.38 10.65 7.67 -40.82 -0.31 10.34 16 33 H 0.25 7.59 8.31 -40.82 -0.34 7.25 16 34 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.10 1.21 8.14 -51.93 -0.42 0.78 16 36 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 LS Contribution 328.91 15.07 4.96 4.96 Total: -1.00 -34.29 328.91 -8.47 -42.76 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: -6.38 Total: 6.16 kcal Atomic # 6 Polarization: -1.63 SS G_CDS: -2.07 Total: -3.71 kcal Atomic # 7 Polarization: -57.55 SS G_CDS: -0.04 Total: -57.59 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: 0.09 Total: -10.57 kcal Atomic # 14 Polarization: 23.02 SS G_CDS: -5.02 Total: 17.99 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -34.29 -8.47 -42.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497461433.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.411 kcal (2) G-P(sol) polarization free energy of solvation -34.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.756 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds