Wall clock time and date at job start Sun Mar 29 2020 23:24:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46499 * 120.00062 * 2 1 4 4 C 1.52996 * 109.47369 * 89.99742 * 3 2 1 5 5 C 1.52997 * 109.47131 * 179.97438 * 4 3 2 6 6 N 1.46506 * 109.47289 * 180.02562 * 5 4 3 7 7 C 1.36930 * 120.00258 * 180.02562 * 6 5 4 8 8 H 1.08004 * 119.99823 * 0.02562 * 7 6 5 9 9 C 1.38815 * 120.00439 * 179.97438 * 7 6 5 10 10 N 1.31614 * 120.00195 * 179.97438 * 9 7 6 11 11 Si 1.86806 * 119.99374 * 0.02562 * 9 7 6 12 12 H 1.48497 * 109.47228 * 89.99744 * 11 9 7 13 13 H 1.48499 * 109.46828 * 209.99736 * 11 9 7 14 14 H 1.48502 * 109.47200 * 329.99649 * 11 9 7 15 15 C 1.34779 * 119.99726 * 179.97438 * 2 1 3 16 16 O 1.21283 * 119.99426 * 179.97438 * 15 2 1 17 17 C 1.50690 * 120.00123 * 0.02562 * 15 2 1 18 18 H 1.09001 * 115.55166 * 325.58098 * 17 15 2 19 19 C 1.52996 * 117.50164 * 111.25342 * 17 15 2 20 20 C 1.53001 * 117.49961 * 179.91370 * 17 15 2 21 21 C 1.52993 * 138.59075 * 121.61517 * 20 17 15 22 22 C 1.52993 * 138.58462 * 23.39680 * 20 17 15 23 23 H 1.08994 * 109.47354 * 90.00240 * 1 2 3 24 24 H 1.09002 * 109.47278 * 210.00284 * 1 2 3 25 25 H 1.09000 * 109.47206 * 330.00186 * 1 2 3 26 26 H 1.09001 * 109.46813 * 329.99933 * 3 2 1 27 27 H 1.09004 * 109.47041 * 210.00060 * 3 2 1 28 28 H 1.09001 * 109.46997 * 60.00303 * 4 3 2 29 29 H 1.08996 * 109.47452 * 299.99877 * 4 3 2 30 30 H 1.09001 * 109.47289 * 60.00050 * 5 4 3 31 31 H 1.09004 * 109.47261 * 300.00306 * 5 4 3 32 32 H 0.97001 * 119.99251 * 0.02562 * 6 5 4 33 33 H 0.97000 * 119.99761 * 179.97438 * 10 9 7 34 34 H 1.09005 * 117.50489 * 214.97682 * 19 17 15 35 35 H 1.09004 * 117.50058 * 0.02562 * 19 17 15 36 36 H 1.08998 * 117.49888 * 336.59393 * 21 20 17 37 37 H 1.08999 * 117.49838 * 121.62135 * 21 20 17 38 38 H 1.09000 * 117.49896 * 238.38007 * 22 20 17 39 39 H 1.08988 * 117.50326 * 23.41221 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7105 1.4424 5 6 3.2181 3.0351 1.4424 6 7 3.4628 3.4579 2.8236 7 6 4.1360 4.6237 3.0738 8 1 4.4863 5.2318 2.2528 9 6 4.3674 5.0245 4.3825 10 7 5.0150 6.1448 4.6229 11 14 3.7609 3.9729 5.8024 12 1 4.8129 2.9946 6.1784 13 1 3.4546 4.8424 6.9666 14 1 2.5332 3.2459 5.3908 15 6 2.1389 -1.1672 0.0005 16 8 3.3517 -1.1672 0.0001 17 6 1.3854 -2.4722 0.0005 18 1 0.4475 -2.4736 0.5560 19 6 1.4586 -3.3303 -1.2640 20 6 2.2074 -3.7627 -0.0009 21 6 2.3773 -5.0159 0.8600 22 6 3.6076 -4.2315 0.3994 23 1 -0.3634 0.0000 -1.0276 24 1 -0.3634 -0.8900 0.5139 25 1 -0.3633 0.8900 0.5138 26 1 1.6084 2.0283 -0.5139 27 1 3.1500 1.1383 -0.5139 28 1 3.0416 0.9508 1.9563 29 1 1.5001 1.8409 1.9563 30 1 2.6294 3.7950 0.9284 31 1 4.1705 2.9043 0.9286 32 1 3.1478 2.9118 3.5609 33 1 5.1763 6.4251 5.5374 34 1 0.5691 -3.8966 -1.5404 35 1 2.0522 -2.9512 -2.0959 36 1 2.1002 -4.9453 1.9118 37 1 2.1894 -5.9801 0.3878 38 1 4.2291 -4.6798 -0.3757 39 1 4.1399 -3.6450 1.1482 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001498619588.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:24:53 Heat of formation + Delta-G solvation = 40.003660 kcal Electronic energy + Delta-G solvation = -18162.881399 eV Core-core repulsion = 15301.168689 eV Total energy + Delta-G solvation = -2861.712710 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.26086 -37.90176 -36.09823 -34.94979 -32.99314 -32.08327 -30.26388 -27.05814 -26.06457 -23.76615 -22.60121 -22.06030 -21.02059 -20.05284 -18.62704 -17.51145 -17.35741 -16.18651 -15.57080 -15.21395 -14.84304 -14.70451 -14.33276 -14.14022 -13.54073 -13.20281 -12.81858 -12.76785 -12.49996 -12.21800 -12.02708 -11.84511 -11.67275 -11.17144 -10.91078 -10.79924 -10.50042 -10.45115 -10.32561 -10.22275 -10.11381 -9.70409 -9.55779 -8.85792 -8.70490 -7.19291 -5.73489 -3.08578 2.39468 2.81624 3.40082 3.43804 3.46691 3.47437 3.53294 4.02161 4.37601 4.53235 4.62620 4.72047 4.95263 5.07650 5.11665 5.19384 5.29297 5.32963 5.38242 5.38718 5.43153 5.51091 5.55968 5.61720 5.66423 5.74683 5.83322 5.95386 5.98602 6.05280 6.28106 6.48507 6.78208 6.80852 7.30475 8.03138 8.15202 8.45905 9.25006 9.97651 10.18016 11.45111 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.028085 B = 0.004047 C = 0.003800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.740025 B = 6916.545604 C = 7365.702132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.614 5.614 3 C 0.119 3.881 4 C -0.143 4.143 5 C 0.161 3.839 6 N -0.757 5.757 7 C -0.243 4.243 8 H 0.091 0.909 9 C 0.003 3.997 10 N -0.935 5.935 11 Si 0.885 3.115 12 H -0.284 1.284 13 H -0.290 1.290 14 H -0.278 1.278 15 C 0.538 3.462 16 O -0.528 6.528 17 C -0.142 4.142 18 H 0.124 0.876 19 C -0.100 4.100 20 C -0.203 4.203 21 C -0.130 4.130 22 C -0.113 4.113 23 H 0.057 0.943 24 H 0.070 0.930 25 H 0.074 0.926 26 H 0.079 0.921 27 H 0.085 0.915 28 H 0.064 0.936 29 H 0.060 0.940 30 H 0.027 0.973 31 H 0.029 0.971 32 H 0.360 0.640 33 H 0.259 0.741 34 H 0.105 0.895 35 H 0.100 0.900 36 H 0.096 0.904 37 H 0.098 0.902 38 H 0.096 0.904 39 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.462 -21.679 -12.034 27.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.347 5.347 3 C -0.003 4.003 4 C -0.182 4.182 5 C 0.033 3.967 6 N -0.402 5.402 7 C -0.373 4.373 8 H 0.108 0.892 9 C -0.193 4.193 10 N -0.584 5.584 11 Si 0.716 3.284 12 H -0.210 1.210 13 H -0.217 1.217 14 H -0.205 1.205 15 C 0.325 3.675 16 O -0.403 6.403 17 C -0.163 4.163 18 H 0.142 0.858 19 C -0.137 4.137 20 C -0.203 4.203 21 C -0.167 4.167 22 C -0.150 4.150 23 H 0.075 0.925 24 H 0.089 0.911 25 H 0.093 0.907 26 H 0.097 0.903 27 H 0.104 0.896 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.045 0.955 31 H 0.047 0.953 32 H 0.193 0.807 33 H 0.069 0.931 34 H 0.123 0.877 35 H 0.119 0.881 36 H 0.115 0.885 37 H 0.116 0.884 38 H 0.115 0.885 39 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -11.688 -21.439 -12.083 27.244 hybrid contribution -0.625 -0.476 1.232 1.462 sum -12.314 -21.915 -10.851 27.380 Atomic orbital electron populations 1.21828 0.79591 1.03323 1.01805 1.47845 1.07025 1.06156 1.73692 1.21474 0.97680 0.83508 0.97664 1.22107 1.00939 0.98939 0.96207 1.20521 0.96630 0.91937 0.87637 1.42707 1.69521 1.26388 1.01632 1.19088 1.27464 0.97137 0.93640 0.89165 1.24672 1.00480 0.97214 0.96893 1.69703 1.46151 1.23053 1.19443 0.86526 0.78692 0.80053 0.83149 1.21038 1.21680 1.20452 1.19686 0.87469 0.84194 0.76115 1.90719 1.13666 1.87092 1.48864 1.22026 1.00738 0.89080 1.04408 0.85828 1.22648 1.01288 0.99592 0.90152 1.21172 1.01685 0.95894 1.01580 1.22765 1.01763 0.93273 0.98903 1.22608 0.89096 1.00744 1.02513 0.92482 0.91129 0.90713 0.90294 0.89624 0.91691 0.92089 0.95541 0.95327 0.80728 0.93079 0.87672 0.88127 0.88540 0.88378 0.88523 0.88048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.62 10.27 59.85 0.61 1.23 16 2 N -0.61 -7.37 2.87 -181.58 -0.52 -7.90 16 3 C 0.12 1.62 5.41 -4.04 -0.02 1.59 16 4 C -0.14 -2.36 5.65 -26.73 -0.15 -2.51 16 5 C 0.16 3.27 6.26 -4.04 -0.03 3.24 16 6 N -0.76 -19.13 5.41 -59.90 -0.32 -19.45 16 7 C -0.24 -7.21 10.47 -15.06 -0.16 -7.37 16 8 H 0.09 2.83 8.06 -52.48 -0.42 2.41 16 9 C 0.00 0.09 5.50 -17.43 -0.10 -0.01 16 10 N -0.94 -30.19 13.97 55.49 0.78 -29.42 16 11 Si 0.89 22.91 27.74 -169.99 -4.71 18.20 16 12 H -0.28 -7.32 7.11 56.52 0.40 -6.92 16 13 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 14 H -0.28 -6.79 6.52 56.52 0.37 -6.42 16 15 C 0.54 7.32 7.46 -10.99 -0.08 7.24 16 16 O -0.53 -9.32 15.82 5.55 0.09 -9.23 16 17 C -0.14 -1.43 5.28 -91.78 -0.48 -1.92 16 18 H 0.12 0.98 6.44 -51.93 -0.33 0.65 16 19 C -0.10 -0.84 10.24 -26.70 -0.27 -1.11 16 20 C -0.20 -2.07 5.06 -154.48 -0.78 -2.85 16 21 C -0.13 -1.08 10.53 -26.73 -0.28 -1.36 16 22 C -0.11 -1.18 10.16 -26.73 -0.27 -1.45 16 23 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 24 H 0.07 0.45 6.00 -51.93 -0.31 0.14 16 25 H 0.07 0.57 8.07 -51.93 -0.42 0.15 16 26 H 0.08 0.90 8.07 -51.93 -0.42 0.48 16 27 H 0.09 1.29 7.42 -51.93 -0.39 0.90 16 28 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 29 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.36 8.91 5.53 -40.82 -0.23 8.68 16 33 H 0.26 7.93 8.31 -40.82 -0.34 7.59 16 34 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 39 H 0.10 1.22 8.14 -51.94 -0.42 0.80 16 LS Contribution 326.29 15.07 4.92 4.92 Total: -1.00 -35.43 326.29 -8.13 -43.56 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -6.34 Total: 4.60 kcal Atomic # 6 Polarization: -3.26 SS G_CDS: -2.01 Total: -5.27 kcal Atomic # 7 Polarization: -56.70 SS G_CDS: -0.07 Total: -56.77 kcal Atomic # 8 Polarization: -9.32 SS G_CDS: 0.09 Total: -9.23 kcal Atomic # 14 Polarization: 22.91 SS G_CDS: -4.71 Total: 18.20 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -35.43 -8.13 -43.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498619588.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.560 kcal (2) G-P(sol) polarization free energy of solvation -35.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.557 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds