Wall clock time and date at job start Sun Mar 29 2020 23:24:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46499 * 120.00062 * 2 1 4 4 C 1.52996 * 109.47369 * 89.99742 * 3 2 1 5 5 C 1.52997 * 109.47131 * 179.97438 * 4 3 2 6 6 N 1.46506 * 109.47289 * 180.02562 * 5 4 3 7 7 C 1.36930 * 120.00258 * 180.02562 * 6 5 4 8 8 H 1.08004 * 119.99823 * 0.02562 * 7 6 5 9 9 C 1.38815 * 120.00439 * 179.97438 * 7 6 5 10 10 N 1.31614 * 120.00195 * 179.97438 * 9 7 6 11 11 Si 1.86806 * 119.99374 * 0.02562 * 9 7 6 12 12 H 1.48497 * 109.47228 * 89.99744 * 11 9 7 13 13 H 1.48499 * 109.46828 * 209.99736 * 11 9 7 14 14 H 1.48502 * 109.47200 * 329.99649 * 11 9 7 15 15 C 1.34779 * 119.99726 * 179.97438 * 2 1 3 16 16 O 1.21283 * 119.99426 * 179.97438 * 15 2 1 17 17 C 1.50690 * 120.00123 * 0.02562 * 15 2 1 18 18 H 1.09001 * 115.55166 * 325.58098 * 17 15 2 19 19 C 1.52996 * 117.50164 * 111.25342 * 17 15 2 20 20 C 1.53001 * 117.49961 * 179.91370 * 17 15 2 21 21 C 1.52993 * 138.59075 * 121.61517 * 20 17 15 22 22 C 1.52993 * 138.58462 * 23.39680 * 20 17 15 23 23 H 1.08994 * 109.47354 * 90.00240 * 1 2 3 24 24 H 1.09002 * 109.47278 * 210.00284 * 1 2 3 25 25 H 1.09000 * 109.47206 * 330.00186 * 1 2 3 26 26 H 1.09001 * 109.46813 * 329.99933 * 3 2 1 27 27 H 1.09004 * 109.47041 * 210.00060 * 3 2 1 28 28 H 1.09001 * 109.46997 * 60.00303 * 4 3 2 29 29 H 1.08996 * 109.47452 * 299.99877 * 4 3 2 30 30 H 1.09001 * 109.47289 * 60.00050 * 5 4 3 31 31 H 1.09004 * 109.47261 * 300.00306 * 5 4 3 32 32 H 0.97001 * 119.99251 * 0.02562 * 6 5 4 33 33 H 0.97000 * 119.99761 * 179.97438 * 10 9 7 34 34 H 1.09005 * 117.50489 * 214.97682 * 19 17 15 35 35 H 1.09004 * 117.50058 * 0.02562 * 19 17 15 36 36 H 1.08998 * 117.49888 * 336.59393 * 21 20 17 37 37 H 1.08999 * 117.49838 * 121.62135 * 21 20 17 38 38 H 1.09000 * 117.49896 * 238.38007 * 22 20 17 39 39 H 1.08988 * 117.50326 * 23.41221 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7105 1.4424 5 6 3.2181 3.0351 1.4424 6 7 3.4628 3.4579 2.8236 7 6 4.1360 4.6237 3.0738 8 1 4.4863 5.2318 2.2528 9 6 4.3674 5.0245 4.3825 10 7 5.0150 6.1448 4.6229 11 14 3.7609 3.9729 5.8024 12 1 4.8129 2.9946 6.1784 13 1 3.4546 4.8424 6.9666 14 1 2.5332 3.2459 5.3908 15 6 2.1389 -1.1672 0.0005 16 8 3.3517 -1.1672 0.0001 17 6 1.3854 -2.4722 0.0005 18 1 0.4475 -2.4736 0.5560 19 6 1.4586 -3.3303 -1.2640 20 6 2.2074 -3.7627 -0.0009 21 6 2.3773 -5.0159 0.8600 22 6 3.6076 -4.2315 0.3994 23 1 -0.3634 0.0000 -1.0276 24 1 -0.3634 -0.8900 0.5139 25 1 -0.3633 0.8900 0.5138 26 1 1.6084 2.0283 -0.5139 27 1 3.1500 1.1383 -0.5139 28 1 3.0416 0.9508 1.9563 29 1 1.5001 1.8409 1.9563 30 1 2.6294 3.7950 0.9284 31 1 4.1705 2.9043 0.9286 32 1 3.1478 2.9118 3.5609 33 1 5.1763 6.4251 5.5374 34 1 0.5691 -3.8966 -1.5404 35 1 2.0522 -2.9512 -2.0959 36 1 2.1002 -4.9453 1.9118 37 1 2.1894 -5.9801 0.3878 38 1 4.2291 -4.6798 -0.3757 39 1 4.1399 -3.6450 1.1482 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001498619588.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:24:52 Heat of formation + Delta-G solvation = 16.625321 kcal Electronic energy + Delta-G solvation = -18163.895160 eV Core-core repulsion = 15301.168689 eV Total energy + Delta-G solvation = -2862.726471 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.20782 -38.72310 -37.50731 -36.45785 -34.26952 -33.52524 -31.99852 -28.11100 -27.24918 -25.19781 -23.55117 -23.30107 -22.58636 -20.86072 -19.70130 -19.48286 -18.26825 -17.24042 -16.65409 -16.40157 -16.05870 -15.91295 -15.76704 -15.41323 -14.92258 -14.81828 -14.13191 -13.78442 -13.62630 -13.44720 -13.17729 -12.86978 -12.84979 -12.59408 -12.48214 -12.36312 -12.07702 -11.87722 -11.84474 -11.17729 -11.05966 -11.02887 -10.93023 -10.69988 -9.68916 -9.36338 -8.07569 -5.42052 1.33239 1.37930 1.44331 1.45195 1.92543 2.44234 2.72838 2.80051 3.23511 3.31926 3.55092 3.61862 3.83202 3.96976 4.06921 4.17518 4.31830 4.39125 4.46126 4.54383 4.57970 4.69684 4.72111 4.73831 4.77066 4.80826 4.87318 4.96342 5.00075 5.05785 5.20856 5.23232 5.25366 5.53084 5.70014 6.16645 6.38714 7.01994 7.17033 7.77753 7.97329 9.13986 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.028085 B = 0.004047 C = 0.003800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.740025 B = 6916.545604 C = 7365.702132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.612 5.612 3 C 0.125 3.875 4 C -0.125 4.125 5 C 0.157 3.843 6 N -0.761 5.761 7 C -0.242 4.242 8 H 0.057 0.943 9 C -0.063 4.063 10 N -0.982 5.982 11 Si 0.958 3.042 12 H -0.281 1.281 13 H -0.288 1.288 14 H -0.252 1.252 15 C 0.527 3.473 16 O -0.582 6.582 17 C -0.146 4.146 18 H 0.152 0.848 19 C -0.079 4.079 20 C -0.229 4.229 21 C -0.104 4.104 22 C -0.139 4.139 23 H 0.078 0.922 24 H 0.090 0.910 25 H 0.081 0.919 26 H 0.107 0.893 27 H 0.063 0.937 28 H 0.041 0.959 29 H 0.076 0.924 30 H 0.039 0.961 31 H 0.016 0.984 32 H 0.365 0.635 33 H 0.260 0.740 34 H 0.140 0.860 35 H 0.089 0.911 36 H 0.101 0.899 37 H 0.122 0.878 38 H 0.101 0.899 39 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.689 -24.039 -12.181 31.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.344 5.344 3 C 0.001 3.999 4 C -0.164 4.164 5 C 0.030 3.970 6 N -0.407 5.407 7 C -0.373 4.373 8 H 0.075 0.925 9 C -0.255 4.255 10 N -0.633 5.633 11 Si 0.784 3.216 12 H -0.208 1.208 13 H -0.215 1.215 14 H -0.176 1.176 15 C 0.316 3.684 16 O -0.462 6.462 17 C -0.166 4.166 18 H 0.169 0.831 19 C -0.116 4.116 20 C -0.230 4.230 21 C -0.140 4.140 22 C -0.176 4.176 23 H 0.096 0.904 24 H 0.109 0.891 25 H 0.100 0.900 26 H 0.125 0.875 27 H 0.082 0.918 28 H 0.060 0.940 29 H 0.094 0.906 30 H 0.057 0.943 31 H 0.034 0.966 32 H 0.198 0.802 33 H 0.069 0.931 34 H 0.158 0.842 35 H 0.108 0.892 36 H 0.119 0.881 37 H 0.140 0.860 38 H 0.119 0.881 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -14.979 -23.824 -12.269 30.700 hybrid contribution 0.427 0.319 1.173 1.289 sum -14.552 -23.505 -11.096 29.789 Atomic orbital electron populations 1.22142 0.76629 1.04694 1.03662 1.47952 1.08792 1.04999 1.72618 1.21303 0.97835 0.85231 0.95521 1.21912 1.00392 0.95831 0.98258 1.20685 0.96833 0.94286 0.85163 1.42741 1.69083 1.25105 1.03789 1.19080 1.27211 0.98050 0.92953 0.92468 1.25548 1.01149 0.98786 0.99999 1.69882 1.47957 1.25272 1.20152 0.85371 0.79047 0.78206 0.78941 1.20755 1.21466 1.17629 1.20425 0.87146 0.85747 0.75070 1.90696 1.16149 1.87951 1.51428 1.22089 1.01195 0.87028 1.06304 0.83051 1.22764 1.01754 0.98219 0.88823 1.21469 1.01224 0.96805 1.03493 1.22832 0.98721 0.93412 0.99043 1.22563 0.90028 1.02274 1.02756 0.90364 0.89133 0.90029 0.87463 0.91800 0.93980 0.90578 0.94349 0.96564 0.80214 0.93132 0.84205 0.89236 0.88107 0.86019 0.88108 0.90885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.84 10.27 127.77 1.31 2.15 16 2 N -0.61 -13.46 2.87 -846.77 -2.43 -15.90 16 3 C 0.12 3.22 5.41 86.38 0.47 3.69 16 4 C -0.12 -3.99 5.65 30.59 0.17 -3.81 16 5 C 0.16 6.34 6.26 86.38 0.54 6.88 16 6 N -0.76 -38.16 5.41 -343.44 -1.86 -40.02 16 7 C -0.24 -14.58 10.47 84.04 0.88 -13.70 16 8 H 0.06 3.74 8.06 -2.91 -0.02 3.71 16 9 C -0.06 -3.87 5.50 84.86 0.47 -3.41 16 10 N -0.98 -64.75 13.97 21.65 0.30 -64.45 16 11 Si 0.96 47.12 27.74 68.60 1.90 49.02 16 12 H -0.28 -13.67 7.11 99.48 0.71 -12.96 16 13 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 14 H -0.25 -11.17 6.52 99.48 0.65 -10.52 16 15 C 0.53 13.88 7.46 87.65 0.65 14.53 16 16 O -0.58 -21.23 15.82 -3.04 -0.05 -21.28 16 17 C -0.15 -2.59 5.28 -11.54 -0.06 -2.65 16 18 H 0.15 1.79 6.44 -2.39 -0.02 1.77 16 19 C -0.08 -1.10 10.24 30.62 0.31 -0.79 16 20 C -0.23 -4.29 5.06 -52.16 -0.26 -4.55 16 21 C -0.10 -1.50 10.53 30.59 0.32 -1.18 16 22 C -0.14 -2.94 10.16 30.59 0.31 -2.62 16 23 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 24 H 0.09 0.74 6.00 -2.39 -0.01 0.73 16 25 H 0.08 0.91 8.07 -2.39 -0.02 0.89 16 26 H 0.11 2.17 8.07 -2.39 -0.02 2.15 16 27 H 0.06 1.94 7.42 -2.38 -0.02 1.93 16 28 H 0.04 1.53 8.14 -2.39 -0.02 1.52 16 29 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 30 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.02 0.70 8.14 -2.38 -0.02 0.68 16 32 H 0.36 17.45 5.53 -92.71 -0.51 16.94 16 33 H 0.26 16.19 8.31 -92.71 -0.77 15.42 16 34 H 0.14 0.99 8.14 -2.38 -0.02 0.97 16 35 H 0.09 1.46 8.14 -2.38 -0.02 1.44 16 36 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 39 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -79.59 326.29 3.44 -76.15 By element: Atomic # 1 Polarization: 21.46 SS G_CDS: 0.46 Total: 21.91 kcal Atomic # 6 Polarization: -10.57 SS G_CDS: 5.11 Total: -5.45 kcal Atomic # 7 Polarization: -116.37 SS G_CDS: -3.99 Total: -120.36 kcal Atomic # 8 Polarization: -21.23 SS G_CDS: -0.05 Total: -21.28 kcal Atomic # 14 Polarization: 47.12 SS G_CDS: 1.90 Total: 49.02 kcal Total: -79.59 3.44 -76.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498619588.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.778 kcal (2) G-P(sol) polarization free energy of solvation -79.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds