Wall clock time and date at job start Sun Mar 29 2020 23:33:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34777 * 120.00264 * 2 1 4 4 O 1.21283 * 119.99750 * 180.02562 * 3 2 1 5 5 C 1.50702 * 119.99928 * 0.28128 * 3 2 1 6 6 C 1.52996 * 109.47159 * 179.72352 * 5 3 2 7 7 C 1.52994 * 109.47118 * 179.97438 * 6 5 3 8 8 C 1.50708 * 109.47076 * 179.97438 * 7 6 5 9 9 H 1.07999 * 119.99591 * 0.02562 * 8 7 6 10 10 C 1.37876 * 119.99904 * 179.97438 * 8 7 6 11 11 N 1.31514 * 119.99994 * 359.97438 * 10 8 7 12 12 Si 1.86802 * 119.99726 * 180.02562 * 10 8 7 13 13 H 1.48495 * 109.47139 * 60.00128 * 12 10 8 14 14 H 1.48504 * 109.46802 * 179.97438 * 12 10 8 15 15 H 1.48498 * 109.47066 * 299.99956 * 12 10 8 16 16 C 1.46499 * 119.99537 * 180.02562 * 2 1 3 17 17 H 1.09008 * 115.51691 * 154.41551 * 16 2 1 18 18 C 1.52994 * 117.44844 * 8.99212 * 16 2 1 19 19 H 1.09001 * 119.52325 * 4.09596 * 18 16 2 20 20 C 1.57641 * 116.14552 * 161.43821 * 18 16 2 21 21 N 1.48560 * 104.59570 * 87.43732 * 20 18 16 22 22 C 1.48565 * 104.22029 * 319.88260 * 21 20 18 23 23 C 1.53001 * 117.44192 * 299.83169 * 16 2 1 24 24 H 1.08993 * 119.52912 * 355.91523 * 23 16 2 25 25 H 1.08998 * 109.46921 * 89.99095 * 1 2 3 26 26 H 1.08994 * 109.46996 * 209.99677 * 1 2 3 27 27 H 1.09001 * 109.46578 * 329.99540 * 1 2 3 28 28 H 1.09004 * 109.46965 * 299.72211 * 5 3 2 29 29 H 1.08994 * 109.46990 * 59.72065 * 5 3 2 30 30 H 1.09004 * 109.47066 * 299.99797 * 6 5 3 31 31 H 1.09000 * 109.47234 * 59.99288 * 6 5 3 32 32 H 1.08998 * 109.46965 * 299.99512 * 7 6 5 33 33 H 1.09003 * 109.47184 * 60.00331 * 7 6 5 34 34 H 0.96996 * 119.99509 * 179.97438 * 11 10 8 35 35 H 1.09003 * 110.94655 * 328.38914 * 20 18 16 36 36 H 1.08998 * 109.97407 * 205.99499 * 20 18 16 37 37 H 1.00902 * 111.00243 * 200.33039 * 21 20 18 38 38 H 1.09001 * 110.41103 * 280.70070 * 22 21 20 39 39 H 1.09003 * 110.41091 * 158.26310 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3518 1.1671 -0.0005 5 6 1.3855 2.4723 0.0064 6 6 2.3798 3.6351 0.0120 7 6 1.6149 4.9601 0.0179 8 6 2.5943 6.1056 0.0240 9 1 3.6561 5.9081 0.0233 10 6 2.1347 7.4055 0.0294 11 7 0.8417 7.6458 0.0287 12 14 3.3487 8.8252 0.0363 13 1 4.2031 8.7518 -1.1760 14 1 2.6062 10.1113 0.0408 15 1 4.2017 8.7412 1.2489 16 6 2.1974 -1.2688 -0.0006 17 1 3.2007 -1.2317 -0.4254 18 6 1.3886 -2.5499 -0.2133 19 1 0.3210 -2.4825 -0.4229 20 6 2.2064 -3.8219 -0.6585 21 7 2.6537 -4.4438 0.6143 22 6 3.0358 -3.2905 1.4694 23 6 1.9649 -2.2177 1.1769 24 1 1.3266 -1.9030 2.0024 25 1 -0.3633 0.0002 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3632 0.8900 0.5139 28 1 0.7588 2.5344 -0.8833 29 1 0.7590 2.5257 0.8966 30 1 3.0065 3.5731 0.9017 31 1 3.0065 3.5817 -0.8782 32 1 0.9885 5.0220 -0.8721 33 1 0.9880 5.0139 0.9080 34 1 0.5185 8.5604 0.0329 35 1 3.0661 -3.5394 -1.2663 36 1 1.5607 -4.5057 -1.2094 37 1 3.4407 -5.0563 0.4606 38 1 4.0253 -2.9250 1.1948 39 1 3.0128 -3.5736 2.5218 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001524120460.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:33:57 Heat of formation + Delta-G solvation = -7.447609 kcal Electronic energy + Delta-G solvation = -18173.970824 eV Core-core repulsion = 15310.200473 eV Total energy + Delta-G solvation = -2863.770351 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.51296 -38.91996 -35.47293 -34.23095 -32.53271 -31.76020 -28.56324 -27.92001 -27.09800 -24.53010 -23.15482 -21.06704 -20.39198 -20.15911 -18.97225 -17.28842 -16.64589 -16.35429 -16.02926 -15.70602 -14.56362 -14.36815 -14.09753 -13.92763 -13.47065 -13.07162 -12.81770 -12.54047 -12.50035 -12.27715 -12.17827 -11.79513 -11.66149 -11.38814 -10.83949 -10.75600 -10.60051 -10.54644 -10.39739 -9.69985 -9.66752 -9.27699 -9.03915 -8.95084 -8.54125 -8.31384 -5.97290 -3.98741 2.74466 2.78939 3.36985 3.40286 3.44209 3.44251 3.90454 4.22586 4.38587 4.49454 4.62349 4.72049 4.80009 4.97386 5.01713 5.12315 5.27964 5.30888 5.38751 5.50179 5.53611 5.59489 5.68230 5.70587 5.77520 5.84429 6.21754 6.23111 6.46821 6.71965 6.88075 6.92680 7.15493 7.37332 7.70797 7.83730 8.03268 8.34519 8.47281 9.08072 9.65159 11.14238 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.056026 B = 0.003349 C = 0.003238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.646748 B = 8358.049304 C = 8643.935696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.599 5.599 3 C 0.518 3.482 4 O -0.532 6.532 5 C -0.135 4.135 6 C -0.096 4.096 7 C 0.021 3.979 8 C -0.519 4.519 9 H 0.055 0.945 10 C 0.056 3.944 11 N -0.898 5.898 12 Si 0.893 3.107 13 H -0.277 1.277 14 H -0.288 1.288 15 H -0.277 1.277 16 C 0.116 3.884 17 H 0.127 0.873 18 C -0.167 4.167 19 H 0.126 0.874 20 C 0.066 3.934 21 N -0.667 5.667 22 C 0.066 3.934 23 C -0.176 4.176 24 H 0.116 0.884 25 H 0.059 0.941 26 H 0.069 0.931 27 H 0.081 0.919 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.016 0.984 33 H 0.016 0.984 34 H 0.260 0.740 35 H 0.047 0.953 36 H 0.087 0.913 37 H 0.340 0.660 38 H 0.047 0.953 39 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.750 -22.978 -0.013 23.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.332 5.332 3 C 0.308 3.692 4 O -0.407 6.407 5 C -0.175 4.175 6 C -0.134 4.134 7 C -0.016 4.016 8 C -0.557 4.557 9 H 0.074 0.926 10 C -0.145 4.145 11 N -0.538 5.538 12 Si 0.720 3.280 13 H -0.202 1.202 14 H -0.213 1.213 15 H -0.202 1.202 16 C 0.010 3.990 17 H 0.144 0.856 18 C -0.186 4.186 19 H 0.144 0.856 20 C -0.063 4.063 21 N -0.296 5.296 22 C -0.063 4.063 23 C -0.197 4.197 24 H 0.134 0.866 25 H 0.078 0.922 26 H 0.087 0.913 27 H 0.100 0.900 28 H 0.108 0.892 29 H 0.107 0.893 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.034 0.966 33 H 0.034 0.966 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.105 0.895 37 H 0.156 0.844 38 H 0.065 0.935 39 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -1.893 -22.949 0.285 23.029 hybrid contribution 1.170 1.076 -0.334 1.624 sum -0.723 -21.873 -0.049 21.885 Atomic orbital electron populations 1.21855 0.79260 1.03500 1.02243 1.47453 1.06704 1.04464 1.74605 1.21348 0.88293 0.85124 0.74443 1.90668 1.14321 1.87262 1.48498 1.21883 1.00369 0.91525 1.03678 1.21470 0.96771 0.93423 1.01718 1.19121 0.95410 0.89932 0.97113 1.21239 0.93225 0.90971 1.50288 0.92624 1.25017 0.95134 0.98964 0.95364 1.69951 1.12523 1.20174 1.51126 0.86648 0.81186 0.81435 0.78691 1.20229 1.21323 1.20218 1.21724 0.96932 0.80439 0.99858 0.85572 1.24543 0.99825 0.93884 1.00367 0.85644 1.22976 0.97944 0.93783 0.91600 1.63825 1.38080 1.15999 1.11710 1.22413 0.95778 0.89229 0.98873 1.23873 1.02141 1.00940 0.92737 0.86564 0.92206 0.91259 0.90033 0.89247 0.89254 0.92685 0.92683 0.96592 0.96612 0.93004 0.93477 0.89501 0.84444 0.93501 0.89465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.69 9.49 59.85 0.57 1.26 16 2 N -0.60 -7.73 3.21 -173.93 -0.56 -8.28 16 3 C 0.52 8.67 7.67 -10.98 -0.08 8.59 16 4 O -0.53 -10.91 15.69 5.55 0.09 -10.83 16 5 C -0.13 -2.27 4.25 -27.88 -0.12 -2.39 16 6 C -0.10 -2.09 4.44 -26.74 -0.12 -2.21 16 7 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 8 C -0.52 -15.10 9.11 -34.44 -0.31 -15.42 16 9 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 10 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 11 N -0.90 -27.17 13.29 55.43 0.74 -26.43 16 12 Si 0.89 22.10 29.54 -169.99 -5.02 17.08 16 13 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 14 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 15 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 16 C 0.12 1.37 5.71 -67.93 -0.39 0.98 16 17 H 0.13 1.68 7.66 -51.92 -0.40 1.29 16 18 C -0.17 -1.52 6.42 -87.50 -0.56 -2.08 16 19 H 0.13 1.02 6.74 -51.93 -0.35 0.67 16 20 C 0.07 0.53 7.33 -0.37 0.00 0.53 16 21 N -0.67 -5.49 7.63 -107.70 -0.82 -6.31 16 22 C 0.07 0.59 7.27 -2.18 -0.02 0.58 16 23 C -0.18 -1.79 6.64 -89.31 -0.59 -2.38 16 24 H 0.12 1.19 8.14 -51.93 -0.42 0.76 16 25 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.07 0.52 6.46 -51.93 -0.34 0.19 16 27 H 0.08 0.73 6.43 -51.93 -0.33 0.40 16 28 H 0.09 1.37 8.11 -51.93 -0.42 0.94 16 29 H 0.09 1.36 7.40 -51.93 -0.38 0.97 16 30 H 0.05 1.25 8.10 -51.93 -0.42 0.83 16 31 H 0.05 1.25 8.10 -51.93 -0.42 0.83 16 32 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.26 7.43 8.31 -40.82 -0.34 7.10 16 35 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 36 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.34 2.16 8.92 -39.29 -0.35 1.81 16 38 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 318.55 15.07 4.80 4.80 Total: -1.00 -33.39 318.55 -8.98 -42.37 By element: Atomic # 1 Polarization: 4.54 SS G_CDS: -6.34 Total: -1.80 kcal Atomic # 6 Polarization: -8.73 SS G_CDS: -1.86 Total: -10.60 kcal Atomic # 7 Polarization: -40.38 SS G_CDS: -0.64 Total: -41.02 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: 0.09 Total: -10.83 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -33.39 -8.98 -42.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001524120460.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.922 kcal (2) G-P(sol) polarization free energy of solvation -33.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds