Wall clock time and date at job start Sun Mar 29 2020 23:33:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34777 * 120.00264 * 2 1 4 4 O 1.21283 * 119.99750 * 180.02562 * 3 2 1 5 5 C 1.50702 * 119.99928 * 0.28128 * 3 2 1 6 6 C 1.52996 * 109.47159 * 179.72352 * 5 3 2 7 7 C 1.52994 * 109.47118 * 179.97438 * 6 5 3 8 8 C 1.50708 * 109.47076 * 179.97438 * 7 6 5 9 9 H 1.07999 * 119.99591 * 0.02562 * 8 7 6 10 10 C 1.37876 * 119.99904 * 179.97438 * 8 7 6 11 11 N 1.31514 * 119.99994 * 359.97438 * 10 8 7 12 12 Si 1.86802 * 119.99726 * 180.02562 * 10 8 7 13 13 H 1.48495 * 109.47139 * 60.00128 * 12 10 8 14 14 H 1.48504 * 109.46802 * 179.97438 * 12 10 8 15 15 H 1.48498 * 109.47066 * 299.99956 * 12 10 8 16 16 C 1.46499 * 119.99537 * 180.02562 * 2 1 3 17 17 H 1.09008 * 115.51691 * 154.41551 * 16 2 1 18 18 C 1.52994 * 117.44844 * 8.99212 * 16 2 1 19 19 H 1.09001 * 119.52325 * 4.09596 * 18 16 2 20 20 C 1.57641 * 116.14552 * 161.43821 * 18 16 2 21 21 N 1.48560 * 104.59570 * 87.43732 * 20 18 16 22 22 C 1.48565 * 104.22029 * 319.88260 * 21 20 18 23 23 C 1.53001 * 117.44192 * 299.83169 * 16 2 1 24 24 H 1.08993 * 119.52912 * 355.91523 * 23 16 2 25 25 H 1.08998 * 109.46921 * 89.99095 * 1 2 3 26 26 H 1.08994 * 109.46996 * 209.99677 * 1 2 3 27 27 H 1.09001 * 109.46578 * 329.99540 * 1 2 3 28 28 H 1.09004 * 109.46965 * 299.72211 * 5 3 2 29 29 H 1.08994 * 109.46990 * 59.72065 * 5 3 2 30 30 H 1.09004 * 109.47066 * 299.99797 * 6 5 3 31 31 H 1.09000 * 109.47234 * 59.99288 * 6 5 3 32 32 H 1.08998 * 109.46965 * 299.99512 * 7 6 5 33 33 H 1.09003 * 109.47184 * 60.00331 * 7 6 5 34 34 H 0.96996 * 119.99509 * 179.97438 * 11 10 8 35 35 H 1.09003 * 110.94655 * 328.38914 * 20 18 16 36 36 H 1.08998 * 109.97407 * 205.99499 * 20 18 16 37 37 H 1.00902 * 111.00243 * 200.33039 * 21 20 18 38 38 H 1.09001 * 110.41103 * 280.70070 * 22 21 20 39 39 H 1.09003 * 110.41091 * 158.26310 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3518 1.1671 -0.0005 5 6 1.3855 2.4723 0.0064 6 6 2.3798 3.6351 0.0120 7 6 1.6149 4.9601 0.0179 8 6 2.5943 6.1056 0.0240 9 1 3.6561 5.9081 0.0233 10 6 2.1347 7.4055 0.0294 11 7 0.8417 7.6458 0.0287 12 14 3.3487 8.8252 0.0363 13 1 4.2031 8.7518 -1.1760 14 1 2.6062 10.1113 0.0408 15 1 4.2017 8.7412 1.2489 16 6 2.1974 -1.2688 -0.0006 17 1 3.2007 -1.2317 -0.4254 18 6 1.3886 -2.5499 -0.2133 19 1 0.3210 -2.4825 -0.4229 20 6 2.2064 -3.8219 -0.6585 21 7 2.6537 -4.4438 0.6143 22 6 3.0358 -3.2905 1.4694 23 6 1.9649 -2.2177 1.1769 24 1 1.3266 -1.9030 2.0024 25 1 -0.3633 0.0002 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3632 0.8900 0.5139 28 1 0.7588 2.5344 -0.8833 29 1 0.7590 2.5257 0.8966 30 1 3.0065 3.5731 0.9017 31 1 3.0065 3.5817 -0.8782 32 1 0.9885 5.0220 -0.8721 33 1 0.9880 5.0139 0.9080 34 1 0.5185 8.5604 0.0329 35 1 3.0661 -3.5394 -1.2663 36 1 1.5607 -4.5057 -1.2094 37 1 3.4407 -5.0563 0.4606 38 1 4.0253 -2.9250 1.1948 39 1 3.0128 -3.5736 2.5218 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001524120460.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:33:56 Heat of formation + Delta-G solvation = -30.542770 kcal Electronic energy + Delta-G solvation = -18174.972305 eV Core-core repulsion = 15310.200473 eV Total energy + Delta-G solvation = -2864.771832 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.48520 -40.00377 -36.50847 -36.14299 -34.12582 -33.05046 -29.73830 -29.24271 -27.95511 -26.19682 -24.36235 -22.39708 -21.51941 -21.12127 -20.16817 -18.51005 -18.26461 -17.49644 -17.18262 -16.95819 -16.47851 -15.57840 -15.29329 -14.77779 -14.61460 -14.21926 -14.08146 -13.89064 -13.73540 -13.29433 -13.22934 -13.06776 -13.00206 -12.63348 -12.50748 -12.44156 -12.31188 -11.65540 -11.57127 -11.47858 -11.27404 -11.21812 -10.78296 -10.54557 -9.63842 -9.51153 -8.20744 -6.30797 1.39236 1.42142 1.49612 1.50247 1.77279 2.41273 2.60800 3.12189 3.22130 3.48009 3.57142 3.72309 3.85296 4.01174 4.11720 4.16845 4.18982 4.27797 4.43270 4.55214 4.63473 4.72394 4.81742 4.86858 4.90025 4.94489 5.05626 5.06659 5.07693 5.17534 5.50265 5.53977 5.56695 5.74086 5.85414 6.23177 6.29950 6.31976 6.84151 7.10352 7.37785 8.90639 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.056026 B = 0.003349 C = 0.003238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.646748 B = 8358.049304 C = 8643.935696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.589 5.589 3 C 0.515 3.485 4 O -0.582 6.582 5 C -0.125 4.125 6 C -0.083 4.083 7 C 0.028 3.972 8 C -0.550 4.550 9 H 0.050 0.950 10 C 0.004 3.996 11 N -0.929 5.929 12 Si 0.961 3.039 13 H -0.270 1.270 14 H -0.278 1.278 15 H -0.269 1.269 16 C 0.088 3.912 17 H 0.103 0.897 18 C -0.143 4.143 19 H 0.144 0.856 20 C 0.065 3.935 21 N -0.668 5.668 22 C 0.066 3.934 23 C -0.177 4.177 24 H 0.119 0.881 25 H 0.076 0.924 26 H 0.092 0.908 27 H 0.086 0.914 28 H 0.109 0.891 29 H 0.109 0.891 30 H 0.039 0.961 31 H 0.039 0.961 32 H 0.002 0.998 33 H 0.002 0.998 34 H 0.265 0.735 35 H 0.046 0.954 36 H 0.104 0.896 37 H 0.351 0.649 38 H 0.040 0.960 39 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.586 -24.172 -0.045 24.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.320 5.320 3 C 0.306 3.694 4 O -0.462 6.462 5 C -0.164 4.164 6 C -0.121 4.121 7 C -0.009 4.009 8 C -0.588 4.588 9 H 0.069 0.931 10 C -0.194 4.194 11 N -0.569 5.569 12 Si 0.786 3.214 13 H -0.195 1.195 14 H -0.203 1.203 15 H -0.194 1.194 16 C -0.017 4.017 17 H 0.121 0.879 18 C -0.162 4.162 19 H 0.162 0.838 20 C -0.065 4.065 21 N -0.299 5.299 22 C -0.063 4.063 23 C -0.198 4.198 24 H 0.137 0.863 25 H 0.095 0.905 26 H 0.110 0.890 27 H 0.104 0.896 28 H 0.127 0.873 29 H 0.127 0.873 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.020 0.980 33 H 0.020 0.980 34 H 0.074 0.926 35 H 0.065 0.935 36 H 0.122 0.878 37 H 0.168 0.832 38 H 0.058 0.942 39 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -2.766 -24.194 0.251 24.353 hybrid contribution 1.392 1.379 -0.327 1.986 sum -1.374 -22.815 -0.075 22.857 Atomic orbital electron populations 1.22166 0.76718 1.04957 1.03792 1.47386 1.08204 1.03743 1.72640 1.21203 0.87617 0.86161 0.74433 1.90647 1.16246 1.88009 1.51309 1.21701 0.99226 0.89891 1.05608 1.21178 0.97069 0.93636 1.00208 1.18998 0.94856 0.91466 0.95597 1.21670 0.93626 0.92579 1.50948 0.93125 1.25896 0.97106 1.01757 0.94629 1.70054 1.14271 1.21094 1.51452 0.85562 0.78853 0.77966 0.79051 1.19457 1.20268 1.19445 1.21740 0.96757 0.80906 1.02298 0.87946 1.24681 1.00342 0.92248 0.98950 0.83824 1.23067 0.98176 0.93559 0.91652 1.63836 1.38689 1.15675 1.11662 1.22419 0.95123 0.89259 0.99541 1.23918 1.02622 1.00224 0.93029 0.86333 0.90549 0.88950 0.89551 0.87309 0.87264 0.94214 0.94190 0.97955 0.97974 0.92606 0.93537 0.87788 0.83222 0.94219 0.88720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.03 9.49 127.77 1.21 2.24 16 2 N -0.59 -14.51 3.21 -822.58 -2.64 -17.15 16 3 C 0.52 17.29 7.67 87.66 0.67 17.96 16 4 O -0.58 -24.73 15.69 -3.04 -0.05 -24.77 16 5 C -0.12 -4.15 4.25 29.85 0.13 -4.02 16 6 C -0.08 -3.71 4.44 30.59 0.14 -3.57 16 7 C 0.03 1.49 4.97 29.85 0.15 1.64 16 8 C -0.55 -32.63 9.11 25.60 0.23 -32.40 16 9 H 0.05 2.97 7.74 -2.91 -0.02 2.95 16 10 C 0.00 0.25 5.46 84.65 0.46 0.71 16 11 N -0.93 -56.46 13.29 21.45 0.28 -56.17 16 12 Si 0.96 45.34 29.54 68.60 2.03 47.37 16 13 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 14 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 15 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 16 C 0.09 2.02 5.71 44.99 0.26 2.27 16 17 H 0.10 2.83 7.66 -2.38 -0.02 2.81 16 18 C -0.14 -2.26 6.42 -8.77 -0.06 -2.32 16 19 H 0.14 1.77 6.74 -2.39 -0.02 1.76 16 20 C 0.06 0.89 7.33 87.62 0.64 1.53 16 21 N -0.67 -9.60 7.63 -494.65 -3.77 -13.38 16 22 C 0.07 1.10 7.27 86.45 0.63 1.73 16 23 C -0.18 -3.33 6.64 -9.94 -0.07 -3.39 16 24 H 0.12 2.18 8.14 -2.39 -0.02 2.16 16 25 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 26 H 0.09 1.06 6.46 -2.39 -0.02 1.05 16 27 H 0.09 1.31 6.43 -2.39 -0.02 1.30 16 28 H 0.11 3.19 8.11 -2.38 -0.02 3.17 16 29 H 0.11 3.19 7.40 -2.39 -0.02 3.17 16 30 H 0.04 1.86 8.10 -2.38 -0.02 1.85 16 31 H 0.04 1.87 8.10 -2.39 -0.02 1.85 16 32 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 33 H 0.00 0.10 8.14 -2.39 -0.02 0.09 16 34 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 35 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 36 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.35 3.80 8.92 -89.69 -0.80 3.00 16 38 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -72.92 318.55 0.48 -72.45 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: 0.23 Total: 9.29 kcal Atomic # 6 Polarization: -22.03 SS G_CDS: 4.40 Total: -17.63 kcal Atomic # 7 Polarization: -80.57 SS G_CDS: -6.13 Total: -86.70 kcal Atomic # 8 Polarization: -24.73 SS G_CDS: -0.05 Total: -24.77 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.37 kcal Total: -72.92 0.48 -72.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001524120460.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.903 kcal (2) G-P(sol) polarization free energy of solvation -72.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds