Wall clock time and date at job start Sun Mar 29 2020 23:23:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.33000 * 1 3 3 C 1.50706 * 119.99855 * 2 1 4 4 N 1.46902 * 109.46994 * 94.36697 * 3 2 1 5 5 C 1.46895 * 110.99850 * 72.84591 * 4 3 2 6 6 C 1.46900 * 110.99896 * 196.80304 * 4 3 2 7 7 C 1.47096 * 120.00201 * 179.97438 * 2 1 3 8 8 O 1.21615 * 120.00020 * 353.54121 * 7 2 1 9 9 N 1.34774 * 120.00342 * 173.54331 * 7 2 1 10 10 C 1.46492 * 120.00383 * 174.57265 * 9 7 2 11 11 C 1.53007 * 109.47415 * 184.80504 * 10 9 7 12 12 C 1.50697 * 115.54598 * 306.58177 * 11 10 9 13 13 H 1.08002 * 119.99973 * 144.25797 * 12 11 10 14 14 C 1.37879 * 120.00194 * 324.25099 * 12 11 10 15 15 N 1.31510 * 120.00003 * 2.70645 * 14 12 11 16 16 Si 1.86806 * 119.99908 * 182.70507 * 14 12 11 17 17 H 1.48497 * 109.46813 * 65.00080 * 16 14 12 18 18 H 1.48503 * 109.46974 * 184.99796 * 16 14 12 19 19 H 1.48504 * 109.47077 * 305.00077 * 16 14 12 20 20 C 1.53000 * 117.49812 * 160.91195 * 11 10 9 21 21 C 1.52996 * 117.50057 * 92.25045 * 11 10 9 22 22 H 1.07992 * 119.99959 * 359.97438 * 1 2 3 23 23 H 1.07995 * 119.99832 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.46726 * 214.36946 * 3 2 1 25 25 H 1.08995 * 109.46784 * 334.36871 * 3 2 1 26 26 H 1.09003 * 109.47323 * 60.11766 * 5 4 3 27 27 H 1.09002 * 109.46932 * 180.11381 * 5 4 3 28 28 H 1.08995 * 109.47416 * 300.11569 * 5 4 3 29 29 H 1.08997 * 109.47447 * 64.83546 * 6 4 3 30 30 H 1.08997 * 109.47136 * 184.83978 * 6 4 3 31 31 H 1.09006 * 109.47063 * 304.84047 * 6 4 3 32 32 H 0.97009 * 119.99883 * 354.29183 * 9 7 2 33 33 H 1.09003 * 109.47055 * 304.80434 * 10 9 7 34 34 H 1.08998 * 109.47630 * 64.80561 * 10 9 7 35 35 H 0.97000 * 119.99688 * 175.00471 * 15 14 12 36 36 H 1.08992 * 117.50196 * 0.02562 * 20 11 10 37 37 H 1.09000 * 117.49488 * 145.02361 * 20 11 10 38 38 H 1.08991 * 117.49978 * 214.98364 * 21 11 10 39 39 H 1.09005 * 117.49560 * 359.97438 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3300 0.0000 0.0000 3 6 2.0835 1.3052 0.0000 4 7 2.4196 1.6765 1.3810 5 6 3.4899 0.8209 1.9105 6 6 2.7878 3.0958 1.4697 7 6 2.0655 -1.2739 0.0006 8 8 1.4633 -2.3237 0.1195 9 7 3.4069 -1.2777 -0.1307 10 6 4.1510 -2.5338 -0.0112 11 6 5.6522 -2.2459 -0.0801 12 6 6.1074 -1.4518 -1.2773 13 1 6.9102 -0.7364 -1.1772 14 6 5.4990 -1.6387 -2.5004 15 7 4.4865 -2.4707 -2.6108 16 14 6.1129 -0.7101 -4.0005 17 1 7.4948 -1.1480 -4.3223 18 1 5.2228 -0.9917 -5.1554 19 1 6.1090 0.7474 -3.7163 20 6 6.6023 -3.3164 0.4605 21 6 6.3890 -2.0170 1.2411 22 1 -0.5400 0.9352 0.0004 23 1 -0.5399 -0.9353 -0.0004 24 1 2.9997 1.1957 -0.5801 25 1 1.4627 2.0830 -0.4445 26 1 4.3819 0.9311 1.2938 27 1 3.7176 1.1160 2.9348 28 1 3.1643 -0.2192 1.8959 29 1 1.9241 3.7116 1.2190 30 1 3.1142 3.3238 2.4844 31 1 3.5982 3.3053 0.7715 32 1 3.8792 -0.4491 -0.3083 33 1 3.9151 -3.0066 0.9422 34 1 3.8713 -3.2009 -0.8266 35 1 4.0123 -2.5483 -3.4535 36 1 6.1581 -4.2258 0.8648 37 1 7.5569 -3.4459 -0.0495 38 1 7.2031 -1.2924 1.2444 39 1 5.8041 -2.0711 2.1594 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568408106.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:23:32 Heat of formation + Delta-G solvation = 17.378921 kcal Electronic energy + Delta-G solvation = -19694.271491 eV Core-core repulsion = 16831.577699 eV Total energy + Delta-G solvation = -2862.693792 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.24251 -37.11559 -36.62804 -32.99929 -32.90855 -32.19600 -27.43919 -26.73094 -26.19498 -25.42800 -22.21310 -21.59511 -21.15571 -19.29641 -18.17191 -16.80559 -16.09785 -15.42706 -15.23802 -14.82620 -14.57726 -14.15677 -13.89691 -13.76050 -13.19831 -12.74500 -12.43038 -12.27958 -12.03941 -11.80561 -11.54334 -11.42220 -11.33069 -11.10050 -11.09567 -10.81126 -10.54966 -10.28691 -9.71202 -9.15542 -9.12593 -8.95110 -8.87770 -8.31058 -8.20242 -7.76501 -6.03523 -4.24383 1.91216 3.18149 3.26535 3.27107 3.91050 4.19385 4.25428 4.41699 4.91787 5.06127 5.24680 5.31766 5.44873 5.50648 5.57868 5.69421 5.84190 5.87480 5.89931 6.00275 6.05016 6.28724 6.30988 6.52720 6.59592 6.67063 6.72622 6.78012 6.89394 7.08905 7.10776 7.15015 7.24013 7.55642 7.66711 7.93935 8.27768 8.59670 8.79919 9.21800 9.39121 10.85556 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.016820 B = 0.008336 C = 0.007970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.331819 B = 3358.227954 C = 3512.496988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.160 4.160 3 C 0.087 3.913 4 N -0.541 5.541 5 C 0.015 3.985 6 C 0.023 3.977 7 C 0.538 3.462 8 O -0.566 6.566 9 N -0.677 5.677 10 C 0.164 3.836 11 C 0.037 3.963 12 C -0.500 4.500 13 H 0.060 0.940 14 C 0.073 3.927 15 N -0.865 5.865 16 Si 0.893 3.107 17 H -0.276 1.276 18 H -0.286 1.286 19 H -0.277 1.277 20 C -0.198 4.198 21 C -0.211 4.211 22 H 0.107 0.893 23 H 0.112 0.888 24 H 0.050 0.950 25 H 0.081 0.919 26 H 0.036 0.964 27 H 0.063 0.937 28 H 0.078 0.922 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.027 0.973 32 H 0.398 0.602 33 H 0.022 0.978 34 H 0.112 0.888 35 H 0.264 0.736 36 H 0.067 0.933 37 H 0.079 0.921 38 H 0.074 0.926 39 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.576 8.700 4.990 10.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.164 4.164 3 C -0.040 4.040 4 N -0.265 5.265 5 C -0.133 4.133 6 C -0.125 4.125 7 C 0.325 3.675 8 O -0.448 6.448 9 N -0.324 5.324 10 C 0.041 3.959 11 C 0.036 3.964 12 C -0.537 4.537 13 H 0.078 0.922 14 C -0.132 4.132 15 N -0.501 5.501 16 Si 0.720 3.280 17 H -0.202 1.202 18 H -0.211 1.211 19 H -0.202 1.202 20 C -0.237 4.237 21 C -0.248 4.248 22 H 0.125 0.875 23 H 0.130 0.870 24 H 0.068 0.932 25 H 0.100 0.900 26 H 0.055 0.945 27 H 0.081 0.919 28 H 0.096 0.904 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.045 0.955 32 H 0.235 0.765 33 H 0.040 0.960 34 H 0.129 0.871 35 H 0.075 0.925 36 H 0.086 0.914 37 H 0.097 0.903 38 H 0.093 0.907 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.440 7.755 5.210 10.344 hybrid contribution 1.437 1.002 -1.396 2.240 sum -3.003 8.758 3.814 10.013 Atomic orbital electron populations 1.24400 0.94587 1.02432 0.92777 1.21653 0.95748 0.93962 1.05012 1.21128 0.99159 0.94464 0.89285 1.62084 1.41119 1.03431 1.19871 1.22638 0.92442 0.98702 0.99531 1.22395 0.99775 0.88905 1.01415 1.18245 0.82831 0.88577 0.77845 1.90704 1.68537 1.33069 1.52458 1.45797 1.05567 1.12424 1.68621 1.21034 0.89450 0.86020 0.99406 1.19214 0.89446 0.96747 0.90948 1.20474 1.19309 1.22325 0.91604 0.92224 1.25017 0.94870 0.94633 0.98633 1.69866 1.19588 1.34615 1.26015 0.86646 0.79010 0.79980 0.82341 1.20167 1.21130 1.20211 1.22937 1.02935 0.91943 1.05899 1.22941 1.04709 1.00546 0.96627 0.87503 0.86972 0.93197 0.90047 0.94525 0.91852 0.90378 0.91631 0.91501 0.95450 0.76539 0.95990 0.87068 0.92535 0.91436 0.90259 0.90731 0.91335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.51 13.90 28.92 0.40 -1.11 16 2 C -0.16 -2.75 5.23 -102.84 -0.54 -3.29 16 3 C 0.09 1.29 4.93 -4.97 -0.02 1.26 16 4 N -0.54 -7.63 4.96 -252.73 -1.25 -8.88 16 5 C 0.01 0.23 8.25 60.06 0.50 0.72 16 6 C 0.02 0.26 9.55 60.06 0.57 0.84 16 7 C 0.54 11.56 6.55 -12.67 -0.08 11.47 16 8 O -0.57 -14.02 16.25 5.26 0.09 -13.94 16 9 N -0.68 -14.65 3.64 -61.50 -0.22 -14.87 16 10 C 0.16 3.89 4.61 -4.04 -0.02 3.87 16 11 C 0.04 0.87 2.07 -155.66 -0.32 0.54 16 12 C -0.50 -12.52 8.25 -34.44 -0.28 -12.81 16 13 H 0.06 1.49 7.81 -52.49 -0.41 1.08 16 14 C 0.07 1.85 5.28 -17.82 -0.09 1.76 16 15 N -0.87 -22.93 10.20 55.43 0.57 -22.36 16 16 Si 0.89 19.92 29.54 -169.99 -5.02 14.90 16 17 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 18 H -0.29 -6.45 7.11 56.52 0.40 -6.04 16 19 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 20 C -0.20 -4.32 9.96 -26.69 -0.27 -4.58 16 21 C -0.21 -4.33 9.92 -26.69 -0.26 -4.59 16 22 H 0.11 1.23 8.03 -52.49 -0.42 0.81 16 23 H 0.11 1.76 7.51 -52.49 -0.39 1.36 16 24 H 0.05 0.80 6.51 -51.93 -0.34 0.47 16 25 H 0.08 1.01 7.86 -51.93 -0.41 0.61 16 26 H 0.04 0.57 7.61 -51.93 -0.39 0.18 16 27 H 0.06 0.84 8.07 -51.93 -0.42 0.42 16 28 H 0.08 1.36 5.53 -51.93 -0.29 1.07 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.07 0.68 8.04 -51.93 -0.42 0.26 16 31 H 0.03 0.31 8.13 -51.93 -0.42 -0.12 16 32 H 0.40 8.39 4.82 -40.82 -0.20 8.20 16 33 H 0.02 0.52 8.08 -51.93 -0.42 0.10 16 34 H 0.11 3.02 5.98 -51.93 -0.31 2.71 16 35 H 0.26 6.89 8.32 -40.82 -0.34 6.55 16 36 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 37 H 0.08 1.72 8.14 -51.93 -0.42 1.30 16 38 H 0.07 1.49 8.14 -51.93 -0.42 1.06 16 39 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 LS Contribution 317.41 15.07 4.78 4.78 Total: -1.00 -28.06 317.41 -7.58 -35.64 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: -6.09 Total: 10.64 kcal Atomic # 6 Polarization: -5.48 SS G_CDS: -0.42 Total: -5.91 kcal Atomic # 7 Polarization: -45.21 SS G_CDS: -0.91 Total: -46.12 kcal Atomic # 8 Polarization: -14.02 SS G_CDS: 0.09 Total: -13.94 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.02 Total: 14.90 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -28.06 -7.58 -35.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568408106.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.016 kcal (2) G-P(sol) polarization free energy of solvation -28.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.637 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds