Wall clock time and date at job start Sun Mar 29 2020 23:23:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.33000 * 1 3 3 C 1.50706 * 119.99855 * 2 1 4 4 N 1.46902 * 109.46994 * 94.36697 * 3 2 1 5 5 C 1.46895 * 110.99850 * 72.84591 * 4 3 2 6 6 C 1.46900 * 110.99896 * 196.80304 * 4 3 2 7 7 C 1.47096 * 120.00201 * 179.97438 * 2 1 3 8 8 O 1.21615 * 120.00020 * 353.54121 * 7 2 1 9 9 N 1.34774 * 120.00342 * 173.54331 * 7 2 1 10 10 C 1.46492 * 120.00383 * 174.57265 * 9 7 2 11 11 C 1.53007 * 109.47415 * 184.80504 * 10 9 7 12 12 C 1.50697 * 115.54598 * 306.58177 * 11 10 9 13 13 H 1.08002 * 119.99973 * 144.25797 * 12 11 10 14 14 C 1.37879 * 120.00194 * 324.25099 * 12 11 10 15 15 N 1.31510 * 120.00003 * 2.70645 * 14 12 11 16 16 Si 1.86806 * 119.99908 * 182.70507 * 14 12 11 17 17 H 1.48497 * 109.46813 * 65.00080 * 16 14 12 18 18 H 1.48503 * 109.46974 * 184.99796 * 16 14 12 19 19 H 1.48504 * 109.47077 * 305.00077 * 16 14 12 20 20 C 1.53000 * 117.49812 * 160.91195 * 11 10 9 21 21 C 1.52996 * 117.50057 * 92.25045 * 11 10 9 22 22 H 1.07992 * 119.99959 * 359.97438 * 1 2 3 23 23 H 1.07995 * 119.99832 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.46726 * 214.36946 * 3 2 1 25 25 H 1.08995 * 109.46784 * 334.36871 * 3 2 1 26 26 H 1.09003 * 109.47323 * 60.11766 * 5 4 3 27 27 H 1.09002 * 109.46932 * 180.11381 * 5 4 3 28 28 H 1.08995 * 109.47416 * 300.11569 * 5 4 3 29 29 H 1.08997 * 109.47447 * 64.83546 * 6 4 3 30 30 H 1.08997 * 109.47136 * 184.83978 * 6 4 3 31 31 H 1.09006 * 109.47063 * 304.84047 * 6 4 3 32 32 H 0.97009 * 119.99883 * 354.29183 * 9 7 2 33 33 H 1.09003 * 109.47055 * 304.80434 * 10 9 7 34 34 H 1.08998 * 109.47630 * 64.80561 * 10 9 7 35 35 H 0.97000 * 119.99688 * 175.00471 * 15 14 12 36 36 H 1.08992 * 117.50196 * 0.02562 * 20 11 10 37 37 H 1.09000 * 117.49488 * 145.02361 * 20 11 10 38 38 H 1.08991 * 117.49978 * 214.98364 * 21 11 10 39 39 H 1.09005 * 117.49560 * 359.97438 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3300 0.0000 0.0000 3 6 2.0835 1.3052 0.0000 4 7 2.4196 1.6765 1.3810 5 6 3.4899 0.8209 1.9105 6 6 2.7878 3.0958 1.4697 7 6 2.0655 -1.2739 0.0006 8 8 1.4633 -2.3237 0.1195 9 7 3.4069 -1.2777 -0.1307 10 6 4.1510 -2.5338 -0.0112 11 6 5.6522 -2.2459 -0.0801 12 6 6.1074 -1.4518 -1.2773 13 1 6.9102 -0.7364 -1.1772 14 6 5.4990 -1.6387 -2.5004 15 7 4.4865 -2.4707 -2.6108 16 14 6.1129 -0.7101 -4.0005 17 1 7.4948 -1.1480 -4.3223 18 1 5.2228 -0.9917 -5.1554 19 1 6.1090 0.7474 -3.7163 20 6 6.6023 -3.3164 0.4605 21 6 6.3890 -2.0170 1.2411 22 1 -0.5400 0.9352 0.0004 23 1 -0.5399 -0.9353 -0.0004 24 1 2.9997 1.1957 -0.5801 25 1 1.4627 2.0830 -0.4445 26 1 4.3819 0.9311 1.2938 27 1 3.7176 1.1160 2.9348 28 1 3.1643 -0.2192 1.8959 29 1 1.9241 3.7116 1.2190 30 1 3.1142 3.3238 2.4844 31 1 3.5982 3.3053 0.7715 32 1 3.8792 -0.4491 -0.3083 33 1 3.9151 -3.0066 0.9422 34 1 3.8713 -3.2009 -0.8266 35 1 4.0123 -2.5483 -3.4535 36 1 6.1581 -4.2258 0.8648 37 1 7.5569 -3.4459 -0.0495 38 1 7.2031 -1.2924 1.2444 39 1 5.8041 -2.0711 2.1594 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568408106.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:23:31 Heat of formation + Delta-G solvation = -0.473979 kcal Electronic energy + Delta-G solvation = -19695.045650 eV Core-core repulsion = 16831.577699 eV Total energy + Delta-G solvation = -2863.467952 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.83405 -38.59232 -38.17614 -34.75338 -34.20156 -34.10956 -28.57522 -28.05314 -27.74143 -27.28749 -23.59764 -23.04235 -22.70271 -21.14446 -19.77999 -18.37930 -17.74524 -16.84418 -16.73382 -16.53011 -15.92980 -15.58711 -15.44199 -15.25840 -14.79168 -14.37977 -13.84159 -13.64978 -13.38523 -13.28183 -13.01575 -12.90532 -12.70008 -12.64859 -12.44335 -12.31732 -12.27694 -12.06278 -11.52064 -10.99564 -10.76776 -10.63006 -10.45288 -10.15888 -9.56220 -9.29525 -7.96496 -6.23221 0.58504 1.40522 1.44169 1.50363 2.38352 2.41827 2.60231 3.06396 3.23559 3.62160 3.90156 3.97213 4.20797 4.28569 4.39365 4.51736 4.53062 4.64202 4.73220 4.75271 4.77153 4.82200 4.86170 4.93968 5.07839 5.09985 5.11036 5.28138 5.42777 5.50732 5.57197 5.58850 5.89323 5.95015 5.99461 6.13222 6.35226 6.75569 6.98893 7.42108 7.53166 8.89778 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.016820 B = 0.008336 C = 0.007970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.331819 B = 3358.227954 C = 3512.496988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.189 4.189 3 C 0.095 3.905 4 N -0.545 5.545 5 C 0.021 3.979 6 C 0.022 3.978 7 C 0.531 3.469 8 O -0.611 6.611 9 N -0.671 5.671 10 C 0.177 3.823 11 C 0.010 3.990 12 C -0.506 4.506 13 H 0.058 0.942 14 C 0.034 3.966 15 N -0.890 5.890 16 Si 0.948 3.052 17 H -0.277 1.277 18 H -0.291 1.291 19 H -0.265 1.265 20 C -0.201 4.201 21 C -0.183 4.183 22 H 0.152 0.848 23 H 0.099 0.901 24 H 0.031 0.969 25 H 0.113 0.887 26 H 0.024 0.976 27 H 0.080 0.920 28 H 0.049 0.951 29 H 0.085 0.915 30 H 0.077 0.923 31 H 0.025 0.975 32 H 0.401 0.599 33 H 0.015 0.985 34 H 0.074 0.926 35 H 0.257 0.743 36 H 0.074 0.926 37 H 0.077 0.923 38 H 0.084 0.916 39 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.803 11.179 5.478 13.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.192 4.192 3 C -0.032 4.032 4 N -0.269 5.269 5 C -0.127 4.127 6 C -0.125 4.125 7 C 0.320 3.680 8 O -0.496 6.496 9 N -0.318 5.318 10 C 0.052 3.948 11 C 0.009 3.991 12 C -0.543 4.543 13 H 0.077 0.923 14 C -0.168 4.168 15 N -0.527 5.527 16 Si 0.774 3.226 17 H -0.203 1.203 18 H -0.217 1.217 19 H -0.190 1.190 20 C -0.239 4.239 21 C -0.220 4.220 22 H 0.170 0.830 23 H 0.117 0.883 24 H 0.049 0.951 25 H 0.131 0.869 26 H 0.043 0.957 27 H 0.098 0.902 28 H 0.068 0.932 29 H 0.104 0.896 30 H 0.096 0.904 31 H 0.044 0.956 32 H 0.238 0.762 33 H 0.033 0.967 34 H 0.092 0.908 35 H 0.067 0.933 36 H 0.092 0.908 37 H 0.096 0.904 38 H 0.103 0.897 39 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -4.644 10.270 5.709 12.634 hybrid contribution 1.463 0.203 -1.493 2.100 sum -3.181 10.473 4.216 11.729 Atomic orbital electron populations 1.24735 0.93701 1.03947 0.88612 1.21587 0.96437 0.92853 1.08335 1.21087 0.98567 0.93962 0.89595 1.62096 1.40655 1.04771 1.19348 1.22512 0.92209 0.97574 1.00421 1.22495 1.00693 0.87138 1.02189 1.19037 0.82653 0.89880 0.76406 1.90665 1.69201 1.35166 1.54586 1.45695 1.05843 1.11663 1.68574 1.20677 0.90253 0.86439 0.97396 1.19245 0.89270 0.98304 0.92295 1.20667 1.19068 1.22242 0.92323 0.92343 1.25625 0.94941 0.95407 1.00856 1.70061 1.20670 1.36019 1.25959 0.85764 0.78054 0.79482 0.79260 1.20254 1.21681 1.18992 1.22963 1.02305 0.92644 1.06024 1.22916 1.03909 0.99518 0.95669 0.82991 0.88287 0.95122 0.86899 0.95696 0.90159 0.93174 0.89607 0.90391 0.95599 0.76182 0.96653 0.90811 0.93284 0.90755 0.90409 0.89709 0.89892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.92 13.90 66.65 0.93 -0.99 16 2 C -0.19 -6.27 5.23 -18.70 -0.10 -6.36 16 3 C 0.10 2.62 4.93 85.56 0.42 3.04 16 4 N -0.54 -14.07 4.96 -953.48 -4.73 -18.80 16 5 C 0.02 0.62 8.25 127.69 1.05 1.67 16 6 C 0.02 0.43 9.55 127.69 1.22 1.65 16 7 C 0.53 23.31 6.55 86.57 0.57 23.88 16 8 O -0.61 -31.43 16.25 -4.08 -0.07 -31.49 16 9 N -0.67 -29.82 3.64 -466.72 -1.70 -31.52 16 10 C 0.18 8.67 4.61 86.38 0.40 9.07 16 11 C 0.01 0.45 2.07 -52.93 -0.11 0.34 16 12 C -0.51 -25.36 8.25 25.60 0.21 -25.14 16 13 H 0.06 2.89 7.81 -2.91 -0.02 2.87 16 14 C 0.03 1.71 5.28 84.66 0.45 2.16 16 15 N -0.89 -48.48 10.20 21.45 0.22 -48.26 16 16 Si 0.95 40.87 29.54 68.60 2.03 42.90 16 17 H -0.28 -11.90 7.11 99.48 0.71 -11.20 16 18 H -0.29 -12.70 7.11 99.48 0.71 -11.99 16 19 H -0.27 -10.85 7.11 99.48 0.71 -10.15 16 20 C -0.20 -8.67 9.96 30.62 0.30 -8.36 16 21 C -0.18 -7.30 9.92 30.62 0.30 -6.99 16 22 H 0.15 2.76 8.03 -2.91 -0.02 2.73 16 23 H 0.10 2.98 7.51 -2.91 -0.02 2.96 16 24 H 0.03 0.96 6.51 -2.39 -0.02 0.94 16 25 H 0.11 2.36 7.86 -2.39 -0.02 2.34 16 26 H 0.02 0.76 7.61 -2.39 -0.02 0.74 16 27 H 0.08 2.00 8.07 -2.39 -0.02 1.98 16 28 H 0.05 1.74 5.53 -2.39 -0.01 1.72 16 29 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.08 1.33 8.04 -2.39 -0.02 1.31 16 31 H 0.03 0.51 8.13 -2.38 -0.02 0.49 16 32 H 0.40 17.23 4.82 -92.70 -0.45 16.78 16 33 H 0.02 0.75 8.08 -2.39 -0.02 0.73 16 34 H 0.07 4.22 5.98 -2.39 -0.01 4.20 16 35 H 0.26 13.84 8.32 -92.71 -0.77 13.07 16 36 H 0.07 3.07 8.14 -2.39 -0.02 3.05 16 37 H 0.08 3.35 8.14 -2.39 -0.02 3.33 16 38 H 0.08 3.21 8.14 -2.39 -0.02 3.19 16 39 H 0.08 3.06 8.14 -2.38 -0.02 3.04 16 Total: -1.00 -61.76 317.41 1.98 -59.78 By element: Atomic # 1 Polarization: 32.87 SS G_CDS: 0.58 Total: 33.46 kcal Atomic # 6 Polarization: -11.70 SS G_CDS: 5.65 Total: -6.06 kcal Atomic # 7 Polarization: -92.38 SS G_CDS: -6.21 Total: -98.58 kcal Atomic # 8 Polarization: -31.43 SS G_CDS: -0.07 Total: -31.49 kcal Atomic # 14 Polarization: 40.87 SS G_CDS: 2.03 Total: 42.90 kcal Total: -61.76 1.98 -59.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568408106.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.305 kcal (2) G-P(sol) polarization free energy of solvation -61.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds