Wall clock time and date at job start Sun Mar 29 2020 23:56:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46897 * 109.47164 * 2 1 4 4 C 1.46901 * 111.00141 * 57.38282 * 3 2 1 5 5 C 1.50694 * 109.47067 * 66.04527 * 4 3 2 6 6 H 1.08004 * 120.00209 * 0.02562 * 5 4 3 7 7 C 1.37877 * 119.99830 * 179.97438 * 5 4 3 8 8 N 1.31515 * 120.00465 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00024 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47097 * 90.00143 * 9 7 5 11 11 H 1.48502 * 109.47434 * 210.00408 * 9 7 5 12 12 H 1.48502 * 109.47431 * 330.00790 * 9 7 5 13 13 C 1.46901 * 110.99816 * 293.42756 * 3 2 1 14 14 C 1.50704 * 109.47387 * 288.18784 * 13 3 2 15 15 C 1.35315 * 126.12928 * 277.12027 * 14 13 3 16 16 C 1.50697 * 126.03800 * 0.02562 * 15 14 13 17 17 N 1.46896 * 109.47207 * 80.00613 * 16 15 14 18 18 C 1.39869 * 107.91698 * 179.90154 * 15 14 13 19 19 N 1.30838 * 108.20512 * 0.35895 * 18 15 14 20 20 N 1.34947 * 126.12184 * 97.42321 * 14 13 3 21 21 C 1.46502 * 126.04203 * 359.94543 * 20 14 13 22 22 H 1.09000 * 109.46967 * 300.38453 * 1 2 3 23 23 H 1.09002 * 109.47439 * 60.38333 * 1 2 3 24 24 H 1.09004 * 109.47484 * 180.38760 * 1 2 3 25 25 H 1.08998 * 109.46893 * 239.99854 * 2 1 3 26 26 H 1.08999 * 109.47466 * 120.00158 * 2 1 3 27 27 H 1.09000 * 109.46788 * 186.04918 * 4 3 2 28 28 H 1.09002 * 109.47011 * 306.04264 * 4 3 2 29 29 H 0.96990 * 120.00656 * 179.97438 * 8 7 5 30 30 H 1.08998 * 109.47503 * 48.19437 * 13 3 2 31 31 H 1.09006 * 109.46776 * 168.19294 * 13 3 2 32 32 H 1.09001 * 109.47049 * 200.00622 * 16 15 14 33 33 H 1.08995 * 109.47496 * 320.00207 * 16 15 14 34 34 H 1.00900 * 110.99994 * 56.04032 * 17 16 15 35 35 H 1.00896 * 111.00162 * 179.97438 * 17 16 15 36 36 H 1.08007 * 125.89528 * 180.13847 * 18 15 14 37 37 H 1.09000 * 109.46907 * 95.69743 * 21 20 14 38 38 H 1.08999 * 109.47133 * 215.70516 * 21 20 14 39 39 H 1.09004 * 109.46873 * 335.70310 * 21 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.4982 2.1277 1.1551 5 6 2.0664 1.5466 2.4241 6 1 2.7471 0.7094 2.3772 7 6 1.7179 2.0843 3.6450 8 7 0.8894 3.1040 3.7021 9 14 2.4217 1.3635 5.2180 10 1 3.6915 2.0558 5.5550 11 1 1.4490 1.5468 6.3251 12 1 2.6842 -0.0853 5.0246 13 6 1.6810 2.0630 -1.2584 14 6 2.5353 1.5128 -2.3713 15 6 3.7998 1.8920 -2.6686 16 6 4.6044 2.9404 -1.9443 17 7 5.1664 2.3640 -0.7156 18 6 4.2289 1.1371 -3.7650 19 7 3.2543 0.3389 -4.1183 20 7 2.1743 0.5575 -3.2534 21 6 0.8813 -0.1300 -3.2984 22 1 -0.3633 0.5198 0.8865 23 1 -0.3634 0.5079 -0.8934 24 1 -0.3634 -1.0276 0.0070 25 1 1.8932 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 1.7874 3.1755 1.0739 28 1 0.4110 2.0515 1.1755 29 1 0.6440 3.4820 4.5610 30 1 0.6294 1.8946 -1.4904 31 1 1.8635 3.1327 -1.1552 32 1 5.4141 3.2854 -2.5872 33 1 3.9596 3.7814 -1.6892 34 1 5.7165 1.5432 -0.9199 35 1 5.7111 3.0477 -0.2117 36 1 5.1964 1.2043 -4.2404 37 1 0.2320 0.3643 -4.0210 38 1 1.0319 -1.1679 -3.5953 39 1 0.4182 -0.0977 -2.3122 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001577711110.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:56:21 Heat of formation + Delta-G solvation = 91.420117 kcal Electronic energy + Delta-G solvation = -19540.764569 eV Core-core repulsion = 16713.574196 eV Total energy + Delta-G solvation = -2827.190374 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.05897 -37.17415 -34.61321 -32.88428 -32.26970 -30.82276 -29.14423 -27.22887 -26.63981 -24.77044 -23.54263 -22.96522 -20.52717 -19.88919 -18.52939 -16.40162 -15.99133 -15.77520 -15.34125 -14.84418 -14.48909 -14.24912 -14.02744 -13.80260 -13.36862 -13.01087 -12.57978 -12.38250 -12.15681 -12.00345 -11.82872 -11.47008 -11.36711 -11.04512 -10.90523 -10.65786 -10.50032 -10.26049 -10.03192 -9.74895 -9.18071 -8.95680 -8.35993 -8.07877 -7.89680 -7.06627 -5.95848 -3.94666 2.18509 2.77905 3.07566 3.36532 3.42435 3.46312 4.49154 4.73363 5.00045 5.13591 5.24173 5.25639 5.33643 5.40251 5.45427 5.53802 5.66723 5.72014 5.76487 5.91157 5.97182 6.08473 6.13761 6.21978 6.34590 6.62948 6.69638 6.90236 6.93966 7.30415 7.37485 7.43990 7.72546 7.88720 7.99859 8.03908 8.16799 8.27975 8.62755 9.12849 9.68390 11.15153 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.025074 B = 0.006677 C = 0.005789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.427864 B = 4192.184809 C = 4835.495997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.059 3.941 3 N -0.502 5.502 4 C 0.194 3.806 5 C -0.492 4.492 6 H 0.063 0.937 7 C 0.054 3.946 8 N -0.903 5.903 9 Si 0.895 3.105 10 H -0.281 1.281 11 H -0.290 1.290 12 H -0.275 1.275 13 C 0.113 3.887 14 C 0.134 3.866 15 C -0.232 4.232 16 C 0.153 3.847 17 N -0.822 5.822 18 C 0.047 3.953 19 N -0.312 5.312 20 N -0.374 5.374 21 C 0.090 3.910 22 H 0.077 0.923 23 H 0.042 0.958 24 H 0.047 0.953 25 H 0.045 0.955 26 H 0.081 0.919 27 H 0.029 0.971 28 H -0.004 1.004 29 H 0.259 0.741 30 H 0.031 0.969 31 H 0.090 0.910 32 H 0.018 0.982 33 H 0.069 0.931 34 H 0.333 0.667 35 H 0.334 0.666 36 H 0.174 0.826 37 H 0.068 0.932 38 H 0.083 0.917 39 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.527 -2.697 -12.409 12.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C -0.070 4.070 3 N -0.225 5.225 4 C 0.070 3.930 5 C -0.530 4.530 6 H 0.081 0.919 7 C -0.147 4.147 8 N -0.543 5.543 9 Si 0.724 3.276 10 H -0.208 1.208 11 H -0.216 1.216 12 H -0.200 1.200 13 C -0.017 4.017 14 C 0.005 3.995 15 C -0.244 4.244 16 C 0.021 3.979 17 N -0.351 5.351 18 C -0.139 4.139 19 N -0.133 5.133 20 N -0.157 5.157 21 C -0.052 4.052 22 H 0.096 0.904 23 H 0.061 0.939 24 H 0.066 0.934 25 H 0.064 0.936 26 H 0.100 0.900 27 H 0.047 0.953 28 H 0.014 0.986 29 H 0.069 0.931 30 H 0.049 0.951 31 H 0.108 0.892 32 H 0.036 0.964 33 H 0.088 0.912 34 H 0.145 0.855 35 H 0.147 0.853 36 H 0.191 0.809 37 H 0.087 0.913 38 H 0.101 0.899 39 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 1.668 -3.672 -12.839 13.458 hybrid contribution 0.590 0.450 0.898 1.165 sum 2.259 -3.222 -11.941 12.572 Atomic orbital electron populations 1.22536 0.99752 1.01040 1.02098 1.22020 0.91605 0.92105 1.01226 1.62271 1.58794 1.01089 1.00352 1.19774 0.93208 0.93634 0.86407 1.21105 1.26316 1.15815 0.89800 0.91928 1.24941 0.95444 0.95232 0.99043 1.69949 1.34956 1.24209 1.25187 0.86547 0.78696 0.79438 0.82968 1.20753 1.21591 1.20028 1.20631 0.93595 0.99088 0.88351 1.21004 0.95861 0.90673 0.91918 1.19634 0.95392 1.07452 1.01918 1.19785 0.95201 0.93819 0.89061 1.58490 1.43809 1.10118 1.22669 1.23635 0.98324 0.95076 0.96848 1.77233 0.95290 1.24407 1.16354 1.48329 1.12296 1.30706 1.24326 1.22065 0.80939 0.97810 1.04365 0.90385 0.93935 0.93351 0.93629 0.90022 0.95294 0.98630 0.93136 0.95080 0.89174 0.96437 0.91228 0.85516 0.85339 0.80888 0.91330 0.89858 0.88437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.32 8.38 37.16 0.31 -3.01 16 2 C 0.06 1.12 5.31 -3.83 -0.02 1.10 16 3 N -0.50 -10.32 4.65 -237.52 -1.10 -11.42 16 4 C 0.19 4.82 4.42 -4.98 -0.02 4.79 16 5 C -0.49 -13.42 8.55 -34.44 -0.29 -13.71 16 6 H 0.06 1.73 7.10 -52.48 -0.37 1.36 16 7 C 0.05 1.50 5.46 -17.82 -0.10 1.40 16 8 N -0.90 -26.35 13.29 55.43 0.74 -25.61 16 9 Si 0.90 21.62 29.54 -169.99 -5.02 16.60 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 13 C 0.11 2.02 4.73 -4.97 -0.02 2.00 16 14 C 0.13 2.25 5.61 -82.26 -0.46 1.78 16 15 C -0.23 -3.67 5.61 -105.06 -0.59 -4.26 16 16 C 0.15 2.20 6.97 -4.98 -0.03 2.17 16 17 N -0.82 -12.60 9.61 -11.41 -0.11 -12.71 16 18 C 0.05 0.70 11.96 -17.36 -0.21 0.49 16 19 N -0.31 -5.09 12.58 30.63 0.39 -4.71 16 20 N -0.37 -5.90 3.79 -63.88 -0.24 -6.15 16 21 C 0.09 1.11 10.52 59.85 0.63 1.74 16 22 H 0.08 1.56 6.21 -51.93 -0.32 1.24 16 23 H 0.04 0.64 4.72 -51.93 -0.25 0.40 16 24 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.05 0.82 5.93 -51.93 -0.31 0.51 16 26 H 0.08 1.72 6.93 -51.93 -0.36 1.36 16 27 H 0.03 0.78 7.86 -51.93 -0.41 0.37 16 28 H 0.00 -0.10 5.92 -51.93 -0.31 -0.41 16 29 H 0.26 7.21 8.31 -40.82 -0.34 6.88 16 30 H 0.03 0.52 5.39 -51.93 -0.28 0.24 16 31 H 0.09 1.64 7.28 -51.93 -0.38 1.26 16 32 H 0.02 0.22 8.14 -51.93 -0.42 -0.21 16 33 H 0.07 1.06 7.63 -51.93 -0.40 0.66 16 34 H 0.33 4.80 8.98 -39.29 -0.35 4.45 16 35 H 0.33 4.59 9.08 -39.29 -0.36 4.23 16 36 H 0.17 1.97 8.06 -52.48 -0.42 1.55 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.10 1.22 3.23 -51.93 -0.17 1.05 16 LS Contribution 307.50 15.07 4.63 4.63 Total: -1.00 -30.87 307.50 -7.04 -37.90 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -5.50 Total: 6.96 kcal Atomic # 6 Polarization: -4.69 SS G_CDS: -0.81 Total: -5.50 kcal Atomic # 7 Polarization: -60.26 SS G_CDS: -0.33 Total: -60.60 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -30.87 -7.04 -37.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001577711110.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.325 kcal (2) G-P(sol) polarization free energy of solvation -30.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.905 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds