Wall clock time and date at job start Sun Mar 29 2020 23:56:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46897 * 109.47164 * 2 1 4 4 C 1.46901 * 111.00141 * 57.38282 * 3 2 1 5 5 C 1.50694 * 109.47067 * 66.04527 * 4 3 2 6 6 H 1.08004 * 120.00209 * 0.02562 * 5 4 3 7 7 C 1.37877 * 119.99830 * 179.97438 * 5 4 3 8 8 N 1.31515 * 120.00465 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00024 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47097 * 90.00143 * 9 7 5 11 11 H 1.48502 * 109.47434 * 210.00408 * 9 7 5 12 12 H 1.48502 * 109.47431 * 330.00790 * 9 7 5 13 13 C 1.46901 * 110.99816 * 293.42756 * 3 2 1 14 14 C 1.50704 * 109.47387 * 288.18784 * 13 3 2 15 15 C 1.35315 * 126.12928 * 277.12027 * 14 13 3 16 16 C 1.50697 * 126.03800 * 0.02562 * 15 14 13 17 17 N 1.46896 * 109.47207 * 80.00613 * 16 15 14 18 18 C 1.39869 * 107.91698 * 179.90154 * 15 14 13 19 19 N 1.30838 * 108.20512 * 0.35895 * 18 15 14 20 20 N 1.34947 * 126.12184 * 97.42321 * 14 13 3 21 21 C 1.46502 * 126.04203 * 359.94543 * 20 14 13 22 22 H 1.09000 * 109.46967 * 300.38453 * 1 2 3 23 23 H 1.09002 * 109.47439 * 60.38333 * 1 2 3 24 24 H 1.09004 * 109.47484 * 180.38760 * 1 2 3 25 25 H 1.08998 * 109.46893 * 239.99854 * 2 1 3 26 26 H 1.08999 * 109.47466 * 120.00158 * 2 1 3 27 27 H 1.09000 * 109.46788 * 186.04918 * 4 3 2 28 28 H 1.09002 * 109.47011 * 306.04264 * 4 3 2 29 29 H 0.96990 * 120.00656 * 179.97438 * 8 7 5 30 30 H 1.08998 * 109.47503 * 48.19437 * 13 3 2 31 31 H 1.09006 * 109.46776 * 168.19294 * 13 3 2 32 32 H 1.09001 * 109.47049 * 200.00622 * 16 15 14 33 33 H 1.08995 * 109.47496 * 320.00207 * 16 15 14 34 34 H 1.00900 * 110.99994 * 56.04032 * 17 16 15 35 35 H 1.00896 * 111.00162 * 179.97438 * 17 16 15 36 36 H 1.08007 * 125.89528 * 180.13847 * 18 15 14 37 37 H 1.09000 * 109.46907 * 95.69743 * 21 20 14 38 38 H 1.08999 * 109.47133 * 215.70516 * 21 20 14 39 39 H 1.09004 * 109.46873 * 335.70310 * 21 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.4982 2.1277 1.1551 5 6 2.0664 1.5466 2.4241 6 1 2.7471 0.7094 2.3772 7 6 1.7179 2.0843 3.6450 8 7 0.8894 3.1040 3.7021 9 14 2.4217 1.3635 5.2180 10 1 3.6915 2.0558 5.5550 11 1 1.4490 1.5468 6.3251 12 1 2.6842 -0.0853 5.0246 13 6 1.6810 2.0630 -1.2584 14 6 2.5353 1.5128 -2.3713 15 6 3.7998 1.8920 -2.6686 16 6 4.6044 2.9404 -1.9443 17 7 5.1664 2.3640 -0.7156 18 6 4.2289 1.1371 -3.7650 19 7 3.2543 0.3389 -4.1183 20 7 2.1743 0.5575 -3.2534 21 6 0.8813 -0.1300 -3.2984 22 1 -0.3633 0.5198 0.8865 23 1 -0.3634 0.5079 -0.8934 24 1 -0.3634 -1.0276 0.0070 25 1 1.8932 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 1.7874 3.1755 1.0739 28 1 0.4110 2.0515 1.1755 29 1 0.6440 3.4820 4.5610 30 1 0.6294 1.8946 -1.4904 31 1 1.8635 3.1327 -1.1552 32 1 5.4141 3.2854 -2.5872 33 1 3.9596 3.7814 -1.6892 34 1 5.7165 1.5432 -0.9199 35 1 5.7111 3.0477 -0.2117 36 1 5.1964 1.2043 -4.2404 37 1 0.2320 0.3643 -4.0210 38 1 1.0319 -1.1679 -3.5953 39 1 0.4182 -0.0977 -2.3122 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001577711110.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:56:21 Heat of formation + Delta-G solvation = 67.936562 kcal Electronic energy + Delta-G solvation = -19541.782893 eV Core-core repulsion = 16713.574196 eV Total energy + Delta-G solvation = -2828.208697 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.26458 -38.79303 -35.77347 -34.75601 -33.66665 -32.16153 -30.74630 -28.88858 -27.82271 -26.31525 -25.00195 -24.56523 -21.73947 -21.44310 -19.84596 -18.28810 -17.41511 -17.16093 -16.74210 -16.52539 -15.99168 -15.59961 -15.32887 -15.08280 -14.75375 -14.50042 -13.95329 -13.69517 -13.60019 -13.31904 -13.19791 -13.01228 -12.83548 -12.63112 -12.61086 -12.42211 -12.35560 -11.79085 -11.60167 -11.36621 -11.19164 -10.50729 -10.16750 -9.28067 -9.06691 -8.75163 -8.09973 -6.16145 0.94594 1.44460 1.45691 1.55758 1.67142 1.89473 2.47363 3.23103 3.48003 3.65933 3.80157 4.06351 4.16668 4.21696 4.31721 4.38045 4.43645 4.49867 4.57206 4.61230 4.62085 4.67097 4.89111 4.91384 5.03336 5.06955 5.28609 5.43253 5.45394 5.55782 5.76988 5.80852 6.11508 6.20079 6.47544 6.60783 6.74210 6.83035 6.92945 6.99236 7.51648 9.00438 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.025074 B = 0.006677 C = 0.005789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.427864 B = 4192.184809 C = 4835.495997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.064 3.936 3 N -0.507 5.507 4 C 0.214 3.786 5 C -0.501 4.501 6 H 0.055 0.945 7 C 0.004 3.996 8 N -0.935 5.935 9 Si 0.959 3.041 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.269 1.269 13 C 0.121 3.879 14 C 0.116 3.884 15 C -0.238 4.238 16 C 0.156 3.844 17 N -0.841 5.841 18 C 0.050 3.950 19 N -0.327 5.327 20 N -0.377 5.377 21 C 0.082 3.918 22 H 0.043 0.957 23 H 0.061 0.939 24 H 0.074 0.926 25 H 0.061 0.939 26 H 0.056 0.944 27 H -0.001 1.001 28 H -0.020 1.020 29 H 0.261 0.739 30 H 0.042 0.958 31 H 0.080 0.920 32 H 0.045 0.955 33 H 0.056 0.944 34 H 0.338 0.662 35 H 0.341 0.659 36 H 0.206 0.794 37 H 0.088 0.912 38 H 0.097 0.903 39 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.120 -3.765 -13.371 14.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.065 4.065 3 N -0.230 5.230 4 C 0.088 3.912 5 C -0.539 4.539 6 H 0.074 0.926 7 C -0.193 4.193 8 N -0.577 5.577 9 Si 0.785 3.215 10 H -0.203 1.203 11 H -0.211 1.211 12 H -0.193 1.193 13 C -0.009 4.009 14 C -0.013 4.013 15 C -0.250 4.250 16 C 0.024 3.976 17 N -0.372 5.372 18 C -0.135 4.135 19 N -0.149 5.149 20 N -0.160 5.160 21 C -0.058 4.058 22 H 0.062 0.938 23 H 0.080 0.920 24 H 0.093 0.907 25 H 0.080 0.920 26 H 0.075 0.925 27 H 0.017 0.983 28 H -0.003 1.003 29 H 0.070 0.930 30 H 0.060 0.940 31 H 0.098 0.902 32 H 0.063 0.937 33 H 0.074 0.926 34 H 0.150 0.850 35 H 0.154 0.846 36 H 0.223 0.777 37 H 0.106 0.894 38 H 0.115 0.885 39 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 2.261 -4.757 -13.821 14.791 hybrid contribution 0.415 0.776 1.115 1.421 sum 2.675 -3.981 -12.706 13.581 Atomic orbital electron populations 1.22398 0.98070 1.02521 1.01327 1.21943 0.92966 0.90857 1.00684 1.62101 1.59021 1.01622 1.00305 1.19357 0.91979 0.92289 0.87582 1.21348 1.25983 1.15504 0.91090 0.92637 1.25725 0.95762 0.95563 1.02261 1.70063 1.36189 1.25452 1.25992 0.85541 0.78004 0.78913 0.79059 1.20279 1.21131 1.19320 1.20486 0.94583 0.98364 0.87464 1.20826 0.96334 0.91909 0.92277 1.19913 0.95247 1.07599 1.02227 1.19766 0.95630 0.93027 0.89145 1.58468 1.44372 1.10821 1.23510 1.24120 0.99214 0.93976 0.96224 1.77208 0.95795 1.25031 1.16829 1.48567 1.13083 1.30458 1.23848 1.22293 0.80002 0.98692 1.04828 0.93832 0.91988 0.90696 0.92040 0.92504 0.98278 1.00283 0.93041 0.93966 0.90218 0.93677 0.92602 0.84990 0.84595 0.77741 0.89374 0.88466 0.88737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.10 8.38 71.98 0.60 -5.50 16 2 C 0.06 2.39 5.31 86.30 0.46 2.85 16 3 N -0.51 -21.02 4.65 -905.38 -4.21 -25.23 16 4 C 0.21 10.91 4.42 85.55 0.38 11.28 16 5 C -0.50 -27.82 8.55 25.60 0.22 -27.60 16 6 H 0.06 3.11 7.10 -2.91 -0.02 3.09 16 7 C 0.00 0.23 5.46 84.65 0.46 0.70 16 8 N -0.94 -55.55 13.29 21.45 0.28 -55.26 16 9 Si 0.96 44.53 29.54 68.60 2.03 46.55 16 10 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 11 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 12 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 13 C 0.12 4.28 4.73 85.56 0.40 4.68 16 14 C 0.12 3.73 5.61 41.41 0.23 3.96 16 15 C -0.24 -7.14 5.61 -20.15 -0.11 -7.25 16 16 C 0.16 4.31 6.97 85.56 0.60 4.90 16 17 N -0.84 -25.22 9.61 -190.02 -1.83 -27.04 16 18 C 0.05 1.36 11.96 85.24 1.02 2.38 16 19 N -0.33 -9.91 12.58 -57.02 -0.72 -10.63 16 20 N -0.38 -11.13 3.79 -356.02 -1.35 -12.48 16 21 C 0.08 1.83 10.52 127.77 1.34 3.17 16 22 H 0.04 1.75 6.21 -2.39 -0.01 1.74 16 23 H 0.06 1.79 4.72 -2.39 -0.01 1.77 16 24 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 25 H 0.06 2.11 5.93 -2.39 -0.01 2.10 16 26 H 0.06 2.40 6.93 -2.39 -0.02 2.39 16 27 H 0.00 -0.05 7.86 -2.39 -0.02 -0.07 16 28 H -0.02 -1.09 5.92 -2.39 -0.01 -1.11 16 29 H 0.26 14.69 8.31 -92.72 -0.77 13.92 16 30 H 0.04 1.39 5.39 -2.39 -0.01 1.38 16 31 H 0.08 2.96 7.28 -2.38 -0.02 2.95 16 32 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.06 1.69 7.63 -2.39 -0.02 1.67 16 34 H 0.34 9.37 8.98 -89.69 -0.81 8.56 16 35 H 0.34 9.20 9.08 -89.70 -0.81 8.39 16 36 H 0.21 3.96 8.06 -2.91 -0.02 3.94 16 37 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 39 H 0.09 2.13 3.23 -2.38 -0.01 2.13 16 Total: -1.00 -66.02 307.50 -0.72 -66.74 By element: Atomic # 1 Polarization: 24.31 SS G_CDS: -0.54 Total: 23.77 kcal Atomic # 6 Polarization: -12.03 SS G_CDS: 5.60 Total: -6.43 kcal Atomic # 7 Polarization: -122.82 SS G_CDS: -7.82 Total: -130.64 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.55 kcal Total: -66.02 -0.72 -66.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001577711110.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.679 kcal (2) G-P(sol) polarization free energy of solvation -66.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.742 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds