Wall clock time and date at job start Sun Mar 29 2020 22:52:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46497 * 109.47161 * 2 1 4 4 C 1.46500 * 119.99672 * 90.00427 * 3 2 1 5 5 C 1.50706 * 109.47267 * 89.99952 * 4 3 2 6 6 H 1.07998 * 119.99921 * 359.97438 * 5 4 3 7 7 C 1.37880 * 120.00045 * 180.02562 * 5 4 3 8 8 N 1.31518 * 119.99784 * 359.97438 * 7 5 4 9 9 Si 1.86792 * 119.99969 * 179.97438 * 7 5 4 10 10 H 1.48494 * 109.47193 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47349 * 119.99907 * 9 7 5 12 12 H 1.48500 * 109.47128 * 239.99276 * 9 7 5 13 13 C 1.34777 * 120.00630 * 269.99818 * 3 2 1 14 14 O 1.21268 * 120.00352 * 180.02562 * 13 3 2 15 15 C 1.50706 * 119.99470 * 0.02562 * 13 3 2 16 16 H 1.08998 * 115.56587 * 74.26325 * 15 13 3 17 17 C 1.52362 * 117.51991 * 288.48141 * 15 13 3 18 18 H 1.09000 * 116.25803 * 146.48589 * 17 15 13 19 19 C 1.52239 * 119.61346 * 1.51825 * 17 15 13 20 20 N 1.46741 * 110.47647 * 310.54041 * 19 17 15 21 21 C 1.47167 * 110.33539 * 303.65573 * 20 19 17 22 22 C 1.52991 * 108.59294 * 76.10978 * 21 20 19 23 23 C 1.52400 * 60.52877 * 252.58290 * 17 15 13 24 24 H 1.08992 * 117.44498 * 252.67117 * 23 17 15 25 25 H 1.09001 * 109.47055 * 300.00130 * 1 2 3 26 26 H 1.08996 * 109.46798 * 59.99648 * 1 2 3 27 27 H 1.09000 * 109.47386 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46973 * 240.00412 * 2 1 3 29 29 H 1.08997 * 109.47465 * 120.00694 * 2 1 3 30 30 H 1.08998 * 109.46977 * 209.99784 * 4 3 2 31 31 H 1.09001 * 109.47344 * 329.99576 * 4 3 2 32 32 H 0.96995 * 119.99931 * 180.02562 * 8 7 5 33 33 H 1.08990 * 109.30712 * 70.85350 * 19 17 15 34 34 H 1.09004 * 109.30030 * 190.44468 * 19 17 15 35 35 H 1.00901 * 110.99964 * 67.13349 * 20 19 17 36 36 H 1.09001 * 109.61407 * 195.83754 * 21 20 19 37 37 H 1.08999 * 109.62159 * 316.37525 * 21 20 19 38 38 H 1.08997 * 109.44364 * 65.92079 * 22 21 20 39 39 H 1.08997 * 109.44790 * 185.82337 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0717 1.2688 5 6 3.6859 1.8348 1.7038 6 1 4.3427 1.2301 1.0961 7 6 4.1493 2.3894 2.8780 8 7 3.3493 3.1254 3.6182 9 14 5.9132 2.0952 3.4175 10 1 6.6005 1.2393 2.4175 11 1 6.6212 3.3961 3.5263 12 1 5.9203 1.4160 4.7381 13 6 2.2431 2.0166 -1.1671 14 8 2.6477 3.1598 -1.1671 15 6 1.9914 1.3064 -2.4723 16 1 0.9436 1.1828 -2.7461 17 6 2.9581 0.1973 -2.8681 18 1 2.5320 -0.6386 -3.4229 19 6 4.1019 -0.1725 -1.9339 20 7 4.8296 1.0300 -1.5123 21 6 5.3136 1.7730 -2.6868 22 6 4.1328 2.5162 -3.3145 23 6 3.0015 1.5290 -3.6078 24 1 2.6149 1.5506 -4.6266 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 2.0957 3.1409 1.1385 31 1 1.5818 1.6876 2.0284 32 1 3.6753 3.5158 4.4441 33 1 3.7007 -0.6775 -1.0553 34 1 4.7883 -0.8421 -2.4522 35 1 4.2526 1.6151 -0.9269 36 1 6.0748 2.4896 -2.3783 37 1 5.7352 1.0769 -3.4120 38 1 3.7772 3.2810 -2.6242 39 1 4.4532 2.9874 -4.2437 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001577711129.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:52:09 Heat of formation + Delta-G solvation = -2.973686 kcal Electronic energy + Delta-G solvation = -20369.545134 eV Core-core repulsion = 17505.968787 eV Total energy + Delta-G solvation = -2863.576347 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.77503 -37.53947 -35.41231 -33.70065 -32.65839 -30.67919 -30.11288 -27.43869 -25.54542 -23.49963 -22.99816 -22.87315 -21.31096 -19.03229 -18.02732 -16.73443 -16.40104 -15.60940 -15.55755 -14.95855 -14.34549 -14.23699 -13.69551 -13.45225 -13.36724 -12.84218 -12.40191 -12.32425 -12.15372 -12.01189 -11.80435 -11.56495 -11.27424 -11.18166 -10.82438 -10.70980 -10.53540 -10.48040 -10.03904 -9.82748 -9.68625 -9.47163 -8.70194 -8.39695 -7.94136 -7.68276 -6.00612 -4.04896 3.21779 3.34983 3.43142 3.50671 3.64747 3.97788 4.50390 4.63908 4.81145 4.88231 4.96840 5.25982 5.29030 5.34846 5.39801 5.51084 5.64064 5.65546 5.70286 5.84530 5.87249 5.93297 6.06982 6.08604 6.16665 6.23147 6.26069 6.39200 6.49062 6.78200 7.06016 7.44260 7.46385 7.54626 7.95516 7.99583 8.25092 8.37452 8.91489 9.08284 9.61255 11.07555 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.020535 B = 0.009345 C = 0.007685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.223558 B = 2995.557979 C = 3642.812418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.100 3.900 3 N -0.588 5.588 4 C 0.242 3.758 5 C -0.527 4.527 6 H 0.071 0.929 7 C 0.062 3.938 8 N -0.896 5.896 9 Si 0.894 3.106 10 H -0.268 1.268 11 H -0.285 1.285 12 H -0.286 1.286 13 C 0.531 3.469 14 O -0.536 6.536 15 C -0.186 4.186 16 H 0.122 0.878 17 C -0.166 4.166 18 H 0.106 0.894 19 C 0.078 3.922 20 N -0.687 5.687 21 C 0.060 3.940 22 C -0.161 4.161 23 C -0.116 4.116 24 H 0.105 0.895 25 H 0.060 0.940 26 H 0.049 0.951 27 H 0.059 0.941 28 H 0.073 0.927 29 H 0.082 0.918 30 H 0.043 0.957 31 H 0.032 0.968 32 H 0.261 0.739 33 H 0.083 0.917 34 H 0.075 0.925 35 H 0.369 0.631 36 H 0.073 0.927 37 H 0.063 0.937 38 H 0.116 0.884 39 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.885 -7.834 -12.258 14.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.024 4.024 3 N -0.320 5.320 4 C 0.123 3.877 5 C -0.566 4.566 6 H 0.089 0.911 7 C -0.140 4.140 8 N -0.535 5.535 9 Si 0.722 3.278 10 H -0.192 1.192 11 H -0.211 1.211 12 H -0.212 1.212 13 C 0.318 3.682 14 O -0.414 6.414 15 C -0.207 4.207 16 H 0.139 0.861 17 C -0.186 4.186 18 H 0.124 0.876 19 C -0.053 4.053 20 N -0.324 5.324 21 C -0.070 4.070 22 C -0.200 4.200 23 C -0.135 4.135 24 H 0.123 0.877 25 H 0.079 0.921 26 H 0.068 0.932 27 H 0.078 0.922 28 H 0.092 0.908 29 H 0.100 0.900 30 H 0.061 0.939 31 H 0.050 0.950 32 H 0.071 0.929 33 H 0.101 0.899 34 H 0.093 0.907 35 H 0.196 0.804 36 H 0.091 0.909 37 H 0.081 0.919 38 H 0.134 0.866 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.089 -7.439 -11.894 14.184 hybrid contribution -0.201 0.151 -0.060 0.259 sum -2.290 -7.288 -11.954 14.187 Atomic orbital electron populations 1.22194 0.96872 1.01339 1.02171 1.21584 0.93555 0.84260 1.03014 1.48327 1.62832 1.13300 1.07496 1.19362 0.96714 0.93594 0.78021 1.21586 0.96656 1.31894 1.06421 0.91114 1.24919 0.97757 0.94882 0.96424 1.69953 1.35613 1.33605 1.14333 0.86479 0.84871 0.78120 0.78324 1.19189 1.21069 1.21228 1.19397 0.78245 0.86320 0.84225 1.90548 1.46311 1.18027 1.86562 1.22442 0.97774 1.04186 0.96341 0.86062 1.22906 1.00026 0.92938 1.02762 0.87614 1.21553 0.92094 0.94384 0.97221 1.61138 1.43380 1.10067 1.17854 1.21983 0.96203 0.96690 0.92121 1.22304 0.95391 0.99390 1.02901 1.22320 0.98402 0.97332 0.95417 0.87709 0.92137 0.93208 0.92223 0.90843 0.89969 0.93938 0.94965 0.92905 0.89855 0.90713 0.80404 0.90879 0.91877 0.86600 0.91870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.27 10.24 37.16 0.38 -1.89 16 2 C 0.10 1.60 5.10 -4.04 -0.02 1.58 16 3 N -0.59 -12.04 2.22 -175.06 -0.39 -12.43 16 4 C 0.24 6.16 5.16 -5.19 -0.03 6.13 16 5 C -0.53 -14.46 8.95 -34.44 -0.31 -14.77 16 6 H 0.07 1.94 6.67 -52.49 -0.35 1.59 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 8 N -0.90 -26.43 13.29 55.43 0.74 -25.69 16 9 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 10 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 12 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 13 C 0.53 10.80 4.05 -10.98 -0.04 10.76 16 14 O -0.54 -12.98 12.92 5.57 0.07 -12.91 16 15 C -0.19 -2.91 4.98 -91.78 -0.46 -3.36 16 16 H 0.12 1.64 8.02 -51.93 -0.42 1.23 16 17 C -0.17 -2.25 4.91 -91.64 -0.45 -2.70 16 18 H 0.11 1.14 8.14 -51.93 -0.42 0.72 16 19 C 0.08 1.20 5.86 -4.30 -0.03 1.17 16 20 N -0.69 -13.12 6.80 -114.13 -0.78 -13.90 16 21 C 0.06 0.99 6.57 -3.68 -0.02 0.97 16 22 C -0.16 -2.61 5.64 -26.74 -0.15 -2.76 16 23 C -0.12 -1.67 6.27 -90.63 -0.57 -2.24 16 24 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 25 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 26 H 0.05 0.65 8.02 -51.93 -0.42 0.23 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.07 1.03 4.19 -51.93 -0.22 0.81 16 29 H 0.08 1.37 8.07 -51.93 -0.42 0.95 16 30 H 0.04 1.23 7.42 -51.93 -0.39 0.84 16 31 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 32 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 33 H 0.08 1.31 6.02 -51.93 -0.31 1.00 16 34 H 0.07 1.01 8.12 -51.93 -0.42 0.59 16 35 H 0.37 8.09 3.29 -39.29 -0.13 7.96 16 36 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.06 0.91 7.97 -51.93 -0.41 0.49 16 38 H 0.12 2.31 4.85 -51.93 -0.25 2.06 16 39 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 297.14 15.07 4.48 4.48 Total: -1.00 -31.02 297.14 -8.52 -39.54 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: -5.82 Total: 9.38 kcal Atomic # 6 Polarization: -3.66 SS G_CDS: -1.79 Total: -5.46 kcal Atomic # 7 Polarization: -51.59 SS G_CDS: -0.43 Total: -52.01 kcal Atomic # 8 Polarization: -12.98 SS G_CDS: 0.07 Total: -12.91 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -31.02 -8.52 -39.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001577711129.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.566 kcal (2) G-P(sol) polarization free energy of solvation -31.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds