Wall clock time and date at job start Sun Mar 29 2020 23:59:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00075 * 2 1 4 4 H 1.48497 * 109.47280 * 270.00066 * 3 2 1 5 5 H 1.48501 * 109.47236 * 29.99999 * 3 2 1 6 6 H 1.48502 * 109.47224 * 149.99963 * 3 2 1 7 7 C 1.37873 * 119.99889 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00418 * 0.02562 * 7 2 1 9 9 C 1.50706 * 119.99977 * 179.97438 * 7 2 1 10 10 N 1.46903 * 109.46880 * 176.97217 * 9 7 2 11 11 C 1.46900 * 110.99800 * 75.48388 * 10 9 7 12 12 C 1.53003 * 109.46591 * 189.99514 * 11 10 9 13 13 C 1.52998 * 109.46546 * 179.97438 * 12 11 10 14 14 N 1.46902 * 109.46908 * 180.02562 * 13 12 11 15 15 C 1.46903 * 111.00369 * 180.02562 * 14 13 12 16 16 C 1.52997 * 117.49816 * 223.62489 * 15 14 13 17 17 C 1.53002 * 117.50354 * 154.99632 * 15 14 13 18 18 C 1.46903 * 110.99419 * 199.43593 * 10 9 7 19 19 C 1.53000 * 109.47590 * 71.62320 * 18 10 9 20 20 C 1.52990 * 117.49827 * 244.13704 * 19 18 10 21 21 C 1.52990 * 117.50015 * 175.50819 * 19 18 10 22 22 H 0.97004 * 119.99909 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.46677 * 56.97393 * 9 7 2 24 24 H 1.08997 * 109.47352 * 296.97606 * 9 7 2 25 25 H 1.08998 * 109.47383 * 70.00016 * 11 10 9 26 26 H 1.09000 * 109.46826 * 309.99281 * 11 10 9 27 27 H 1.08998 * 109.46847 * 60.00174 * 12 11 10 28 28 H 1.08994 * 109.47685 * 299.99731 * 12 11 10 29 29 H 1.08998 * 109.47204 * 60.00639 * 13 12 11 30 30 H 1.09003 * 109.47539 * 299.99938 * 13 12 11 31 31 H 1.00904 * 111.00460 * 56.04542 * 14 13 12 32 32 H 1.09001 * 115.54654 * 9.32938 * 15 14 13 33 33 H 1.08998 * 117.50084 * 359.97438 * 16 15 14 34 34 H 1.09003 * 117.49689 * 145.02111 * 16 15 14 35 35 H 1.08995 * 117.49990 * 214.98093 * 17 15 14 36 36 H 1.08996 * 117.49332 * 359.97438 * 17 15 14 37 37 H 1.08997 * 109.46869 * 191.62362 * 18 10 9 38 38 H 1.08995 * 109.47095 * 311.62069 * 18 10 9 39 39 H 1.09010 * 115.54516 * 29.83788 * 19 18 10 40 40 H 1.08998 * 117.50523 * 359.97438 * 20 19 18 41 41 H 1.08999 * 117.50417 * 145.02098 * 20 19 18 42 42 H 1.09004 * 117.50169 * 214.97479 * 21 19 18 43 43 H 1.09000 * 117.50270 * 0.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0000 10 7 4.0012 -2.5771 0.0738 11 6 3.8520 -3.2581 -1.2192 12 6 4.1343 -4.7517 -1.0444 13 6 3.9783 -5.4611 -2.3910 14 7 4.2487 -6.8952 -2.2231 15 6 4.1087 -7.6102 -3.4987 16 6 3.3650 -8.9472 -3.4812 17 6 4.8839 -8.9190 -3.6639 18 6 5.3962 -2.6178 0.5325 19 6 5.4550 -2.2607 2.0191 20 6 6.1996 -0.9826 2.4096 21 6 6.8152 -2.3499 2.7138 22 1 -0.4850 0.8401 0.0004 23 1 3.8752 -0.6334 0.8611 24 1 3.8746 -0.7285 -0.9163 25 1 4.5572 -2.8365 -1.9354 26 1 2.8351 -3.1211 -1.5867 27 1 3.4291 -5.1733 -0.3282 28 1 5.1512 -4.8888 -0.6768 29 1 4.6833 -5.0395 -3.1075 30 1 2.9612 -5.3241 -2.7582 31 1 3.6504 -7.2957 -1.5162 32 1 3.9913 -6.9802 -4.3804 33 1 2.9800 -9.2965 -2.5231 34 1 2.7581 -9.1969 -4.3514 35 1 5.2761 -9.1500 -4.6542 36 1 5.4981 -9.2491 -2.8262 37 1 5.7986 -3.6197 0.3833 38 1 5.9870 -1.9005 -0.0371 39 1 4.5736 -2.5282 2.6020 40 1 6.6480 -0.3962 1.6076 41 1 5.8083 -0.4087 3.2497 42 1 6.8288 -2.6755 3.7539 43 1 7.6683 -2.6625 2.1117 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580052292.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:59:31 Heat of formation + Delta-G solvation = 49.801740 kcal Electronic energy + Delta-G solvation = -18485.498344 eV Core-core repulsion = 15760.043606 eV Total energy + Delta-G solvation = -2725.454739 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -38.27923 -37.81566 -35.92157 -34.09730 -32.40762 -30.08142 -28.09747 -25.70488 -23.38922 -22.51176 -22.06665 -21.44766 -20.97938 -20.49289 -19.50127 -16.81552 -16.14980 -15.91360 -15.35848 -14.91209 -14.68292 -14.26651 -13.89229 -13.58191 -13.23001 -13.01410 -12.47392 -12.42531 -12.04554 -11.93498 -11.67121 -11.33679 -11.25414 -11.02089 -10.95522 -10.81132 -10.68186 -10.52702 -10.27495 -10.14503 -9.97261 -9.74943 -9.36488 -9.22596 -8.54107 -8.29405 -7.35192 -6.02197 -3.98324 3.29510 3.37361 3.40215 3.67256 3.97408 4.13598 4.44705 4.68769 4.76809 4.83178 5.00113 5.15316 5.24543 5.29237 5.32474 5.40629 5.45009 5.49055 5.60790 5.71110 5.76163 5.84604 5.86146 5.88382 5.99043 6.01438 6.05322 6.14833 6.20153 6.32688 6.38061 6.56288 6.65577 6.77111 6.93157 6.98926 7.03077 7.29679 7.68705 7.95756 8.10049 8.70550 9.07603 9.60474 11.11204 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.016604 B = 0.004902 C = 0.003950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.929768 B = 5711.085536 C = 7087.556412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.067 3.933 3 Si 0.871 3.129 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.265 1.265 7 C -0.503 4.503 8 H 0.079 0.921 9 C 0.161 3.839 10 N -0.523 5.523 11 C 0.065 3.935 12 C -0.113 4.113 13 C 0.061 3.939 14 N -0.660 5.660 15 C 0.024 3.976 16 C -0.209 4.209 17 C -0.174 4.174 18 C 0.080 3.920 19 C -0.130 4.130 20 C -0.185 4.185 21 C -0.186 4.186 22 H 0.262 0.738 23 H 0.034 0.966 24 H -0.019 1.019 25 H 0.018 0.982 26 H 0.085 0.915 27 H 0.069 0.931 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.035 0.965 31 H 0.343 0.657 32 H 0.108 0.892 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.096 0.904 37 H 0.071 0.929 38 H 0.022 0.978 39 H 0.114 0.886 40 H 0.087 0.913 41 H 0.090 0.910 42 H 0.089 0.911 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.278 -11.770 -3.255 16.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.134 4.134 3 Si 0.699 3.301 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.190 1.190 7 C -0.542 4.542 8 H 0.097 0.903 9 C 0.035 3.965 10 N -0.247 5.247 11 C -0.064 4.064 12 C -0.152 4.152 13 C -0.068 4.068 14 N -0.290 5.290 15 C -0.087 4.087 16 C -0.247 4.247 17 C -0.213 4.213 18 C -0.048 4.048 19 C -0.149 4.149 20 C -0.222 4.222 21 C -0.224 4.224 22 H 0.072 0.928 23 H 0.052 0.948 24 H -0.001 1.001 25 H 0.037 0.963 26 H 0.103 0.897 27 H 0.087 0.913 28 H 0.084 0.916 29 H 0.088 0.912 30 H 0.054 0.946 31 H 0.162 0.838 32 H 0.126 0.874 33 H 0.113 0.887 34 H 0.111 0.889 35 H 0.110 0.890 36 H 0.115 0.885 37 H 0.089 0.911 38 H 0.040 0.960 39 H 0.132 0.868 40 H 0.106 0.894 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 11.507 -11.785 -2.956 16.734 hybrid contribution -0.105 1.432 -0.705 1.600 sum 11.402 -10.353 -3.661 15.830 Atomic orbital electron populations 1.69898 1.06097 1.26694 1.51528 1.24885 0.94691 0.98742 0.95039 0.86914 0.80532 0.84229 0.78434 1.20466 1.21231 1.18989 1.21058 0.88869 0.94575 1.49661 0.90259 1.20226 0.96940 0.84302 0.95072 1.61908 1.16513 1.19149 1.27091 1.21930 1.01898 0.92171 0.90389 1.21600 1.02289 0.95358 0.95907 1.22001 0.99476 0.86683 0.98657 1.60239 1.59032 1.03267 1.06491 1.22428 1.03494 0.88860 0.93885 1.23418 0.95286 1.02761 1.03280 1.23103 0.93860 1.01531 1.02770 1.21699 0.90806 0.99739 0.92563 1.22304 0.95223 1.00585 0.96771 1.22988 1.04858 0.90951 1.03414 1.22922 0.97171 1.01220 1.01046 0.92778 0.94758 1.00091 0.96332 0.89662 0.91269 0.91635 0.91196 0.94621 0.83755 0.87439 0.88713 0.88906 0.88962 0.88512 0.91063 0.95979 0.86812 0.89420 0.89174 0.89213 0.89397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.72 13.96 55.43 0.77 -26.95 16 2 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 3 Si 0.87 21.62 27.53 -169.99 -4.68 16.94 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 6 H -0.27 -6.34 6.45 56.52 0.36 -5.97 16 7 C -0.50 -14.26 9.14 -34.44 -0.31 -14.58 16 8 H 0.08 2.45 7.93 -52.49 -0.42 2.03 16 9 C 0.16 3.89 3.67 -4.97 -0.02 3.87 16 10 N -0.52 -10.74 4.39 -236.07 -1.04 -11.78 16 11 C 0.06 1.19 4.79 -3.82 -0.02 1.17 16 12 C -0.11 -1.68 5.44 -26.73 -0.15 -1.83 16 13 C 0.06 0.79 5.54 -3.82 -0.02 0.77 16 14 N -0.66 -7.83 6.78 -106.72 -0.72 -8.56 16 15 C 0.02 0.26 6.31 -67.71 -0.43 -0.17 16 16 C -0.21 -1.89 10.23 -26.73 -0.27 -2.16 16 17 C -0.17 -1.61 10.46 -26.72 -0.28 -1.89 16 18 C 0.08 1.39 5.11 -3.82 -0.02 1.37 16 19 C -0.13 -2.15 4.96 -90.63 -0.45 -2.60 16 20 C -0.19 -2.82 9.97 -26.73 -0.27 -3.09 16 21 C -0.19 -2.48 10.25 -26.73 -0.27 -2.75 16 22 H 0.26 7.56 8.31 -40.82 -0.34 7.23 16 23 H 0.03 0.85 5.78 -51.93 -0.30 0.55 16 24 H -0.02 -0.46 7.59 -51.93 -0.39 -0.85 16 25 H 0.02 0.33 8.12 -51.93 -0.42 -0.09 16 26 H 0.08 1.76 7.33 -51.93 -0.38 1.37 16 27 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.07 0.95 6.29 -51.93 -0.33 0.63 16 29 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 30 H 0.04 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.34 3.86 8.52 -39.29 -0.33 3.53 16 32 H 0.11 1.10 7.90 -51.93 -0.41 0.69 16 33 H 0.09 0.84 8.09 -51.93 -0.42 0.42 16 34 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.07 1.11 5.95 -51.93 -0.31 0.80 16 38 H 0.02 0.39 7.79 -51.93 -0.40 -0.02 16 39 H 0.11 2.06 8.14 -51.92 -0.42 1.64 16 40 H 0.09 1.33 8.03 -51.93 -0.42 0.91 16 41 H 0.09 1.34 8.14 -51.93 -0.42 0.91 16 42 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 343.70 15.07 5.18 5.18 Total: -1.00 -29.83 343.70 -11.02 -40.85 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -7.93 Total: 4.34 kcal Atomic # 6 Polarization: -17.42 SS G_CDS: -2.61 Total: -20.03 kcal Atomic # 7 Polarization: -46.30 SS G_CDS: -0.99 Total: -47.28 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.68 Total: 16.94 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -29.83 -11.02 -40.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580052292.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.652 kcal (2) G-P(sol) polarization free energy of solvation -29.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.850 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds