Wall clock time and date at job start Sun Mar 29 2020 23:30:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36939 * 120.00337 * 2 1 4 4 H 1.07996 * 119.99951 * 203.04655 * 3 2 1 5 5 C 1.38811 * 119.99708 * 23.04144 * 3 2 1 6 6 N 1.31624 * 120.00308 * 12.93855 * 5 3 2 7 7 Si 1.86801 * 120.00097 * 192.94018 * 5 3 2 8 8 H 1.48508 * 109.46916 * 359.97438 * 7 5 3 9 9 H 1.48500 * 109.47209 * 119.99921 * 7 5 3 10 10 H 1.48500 * 109.47261 * 240.00225 * 7 5 3 11 11 C 1.46501 * 120.00122 * 179.97438 * 2 1 3 12 12 C 1.52999 * 109.47357 * 89.99892 * 11 2 1 13 13 N 1.46492 * 109.47244 * 180.02562 * 12 11 2 14 14 C 1.34785 * 119.99981 * 180.02562 * 13 12 11 15 15 O 1.21281 * 119.99929 * 359.97438 * 14 13 12 16 16 C 1.50700 * 119.99695 * 180.27377 * 14 13 12 17 17 C 1.53003 * 109.46825 * 179.72191 * 16 14 13 18 18 H 1.09001 * 110.34402 * 307.28912 * 17 16 14 19 19 C 1.51111 * 110.38688 * 69.69662 * 17 16 14 20 20 C 1.30519 * 111.10158 * 135.24832 * 19 17 16 21 21 C 1.51098 * 111.11056 * 0.02562 * 20 19 17 22 22 C 1.54634 * 110.38935 * 184.99992 * 17 16 14 23 23 H 1.09000 * 109.47225 * 275.12585 * 1 2 3 24 24 H 1.09005 * 109.47204 * 35.12608 * 1 2 3 25 25 H 1.08998 * 109.47009 * 155.12258 * 1 2 3 26 26 H 0.96993 * 119.99958 * 179.97438 * 6 5 3 27 27 H 1.09000 * 109.46989 * 330.00177 * 11 2 1 28 28 H 1.08996 * 109.47302 * 210.00646 * 11 2 1 29 29 H 1.09000 * 109.46838 * 60.00192 * 12 11 2 30 30 H 1.09006 * 109.47021 * 300.00680 * 12 11 2 31 31 H 0.97004 * 120.00361 * 359.97438 * 13 12 11 32 32 H 1.09000 * 109.47019 * 299.72117 * 16 14 13 33 33 H 1.08990 * 109.47198 * 59.72601 * 16 14 13 34 34 H 1.08004 * 124.44447 * 315.22892 * 19 17 16 35 35 H 1.08006 * 124.44247 * 180.02562 * 20 19 17 36 36 H 1.08997 * 110.38782 * 224.75577 * 21 20 19 37 37 H 1.08994 * 110.48658 * 102.42092 * 21 20 19 38 38 H 1.09000 * 111.03584 * 334.58696 * 22 17 16 39 39 H 1.08992 * 111.03463 * 98.48224 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1651 1.2231 -0.3661 5 6 1.5388 2.3401 0.4705 6 7 0.4118 2.2598 1.1459 7 14 2.3158 4.0074 0.1453 8 1 3.5699 3.8263 -0.6292 9 1 1.3715 4.8507 -0.6309 10 1 2.6241 4.6704 1.4377 11 6 2.1975 -1.2687 0.0006 12 6 2.4525 -1.7111 -1.4417 13 7 3.1845 -2.9800 -1.4411 14 6 3.5218 -3.5640 -2.6081 15 8 3.2189 -3.0391 -3.6587 16 6 4.2694 -4.8725 -2.6074 17 6 4.5200 -5.3174 -4.0497 18 1 3.5862 -5.3243 -4.6119 19 6 5.5296 -4.4093 -4.7128 20 6 6.4147 -5.0985 -5.3799 21 6 6.1428 -6.5810 -5.2737 22 6 5.1747 -6.7180 -4.0755 23 1 -0.3634 0.0918 1.0236 24 1 -0.3634 0.8405 -0.5913 25 1 -0.3633 -0.9323 -0.4323 26 1 -0.0148 3.0662 1.4750 27 1 1.6084 -2.0281 0.5147 28 1 3.1498 -1.1382 0.5144 29 1 3.0416 -0.9517 -1.9558 30 1 1.5001 -1.8416 -1.9555 31 1 3.4271 -3.3997 -0.6009 32 1 5.2232 -4.7458 -2.0953 33 1 3.6777 -5.6287 -2.0917 34 1 5.5197 -3.3315 -4.6439 35 1 7.2339 -4.6659 -5.9351 36 1 7.0677 -7.1236 -5.0779 37 1 5.6734 -6.9491 -6.1859 38 1 5.7198 -6.9122 -3.1518 39 1 4.4315 -7.4939 -4.2591 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663137403.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:30:05 Heat of formation + Delta-G solvation = -7.295483 kcal Electronic energy + Delta-G solvation = -18118.883949 eV Core-core repulsion = 15255.120195 eV Total energy + Delta-G solvation = -2863.763754 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.86592 -38.26164 -36.02677 -34.10569 -31.85168 -31.14023 -29.07114 -28.18769 -25.90411 -25.40538 -23.04076 -20.71401 -20.65862 -20.08526 -18.73329 -16.95236 -16.61773 -15.94582 -15.88768 -15.26730 -14.95160 -14.55976 -13.91120 -13.52906 -13.29838 -12.91642 -12.37903 -12.32876 -12.09023 -11.96592 -11.96176 -11.41449 -11.25142 -11.17102 -10.88819 -10.87450 -10.85841 -10.58623 -10.33613 -9.93726 -9.92824 -9.55201 -8.98370 -8.66662 -8.56504 -6.79561 -5.74464 -3.22567 2.23178 2.89735 3.37694 3.44043 3.46540 3.50196 4.45480 4.47718 4.51919 4.73132 4.96256 5.10820 5.26522 5.36863 5.40025 5.40947 5.50917 5.62708 5.63905 5.71809 5.78441 5.83664 5.93295 6.04801 6.14474 6.26628 6.50462 6.63448 6.66660 6.77194 6.83398 6.91998 7.36326 7.70757 7.80037 7.80550 8.36947 8.51469 9.21082 9.83529 10.31664 11.30407 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.040134 B = 0.003594 C = 0.003395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.488982 B = 7788.397383 C = 8244.479248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.598 5.598 3 C -0.259 4.259 4 H 0.069 0.931 5 C 0.003 3.997 6 N -0.906 5.906 7 Si 0.906 3.094 8 H -0.277 1.277 9 H -0.289 1.289 10 H -0.290 1.290 11 C 0.144 3.856 12 C 0.094 3.906 13 N -0.727 5.727 14 C 0.505 3.495 15 O -0.543 6.543 16 C -0.133 4.133 17 C -0.054 4.054 18 H 0.090 0.910 19 C -0.137 4.137 20 C -0.187 4.187 21 C -0.098 4.098 22 C -0.123 4.123 23 H 0.033 0.967 24 H 0.042 0.958 25 H -0.001 1.001 26 H 0.252 0.748 27 H 0.040 0.960 28 H 0.052 0.948 29 H 0.064 0.936 30 H 0.058 0.942 31 H 0.396 0.604 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.125 0.875 35 H 0.121 0.879 36 H 0.066 0.934 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.084 -18.058 -6.932 21.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.321 5.321 3 C -0.388 4.388 4 H 0.087 0.913 5 C -0.195 4.195 6 N -0.551 5.551 7 Si 0.735 3.265 8 H -0.202 1.202 9 H -0.215 1.215 10 H -0.217 1.217 11 C 0.015 3.985 12 C -0.031 4.031 13 N -0.378 5.378 14 C 0.291 3.709 15 O -0.420 6.420 16 C -0.173 4.173 17 C -0.073 4.073 18 H 0.108 0.892 19 C -0.155 4.155 20 C -0.205 4.205 21 C -0.135 4.135 22 C -0.160 4.160 23 H 0.051 0.949 24 H 0.061 0.939 25 H 0.017 0.983 26 H 0.063 0.937 27 H 0.058 0.942 28 H 0.070 0.930 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.229 0.771 32 H 0.110 0.890 33 H 0.111 0.889 34 H 0.143 0.857 35 H 0.138 0.862 36 H 0.085 0.915 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 8.717 -17.505 -7.595 20.978 hybrid contribution 0.426 0.929 0.249 1.052 sum 9.143 -16.576 -7.346 20.306 Atomic orbital electron populations 1.20836 0.82335 0.95592 0.99601 1.43795 1.01952 1.00351 1.85989 1.19241 0.98370 0.85529 1.35706 0.91299 1.25035 0.97835 0.98626 0.98033 1.70081 1.19414 1.27187 1.38447 0.86170 0.78648 0.84143 0.77500 1.20244 1.21520 1.21681 1.20839 0.96668 0.89124 0.91839 1.22384 0.95607 0.83246 1.01911 1.46142 1.58336 1.25190 1.08133 1.20657 0.79632 0.86622 0.83985 1.90697 1.54681 1.65373 1.31264 1.21723 1.01359 0.95474 0.98762 1.20827 0.99095 0.93110 0.94258 0.89174 1.23340 0.94844 0.99669 0.97617 1.23220 1.00012 0.95528 1.01742 1.21319 0.99164 0.94646 0.98373 1.22568 0.98401 0.96397 0.98645 0.94866 0.93946 0.98275 0.93741 0.94153 0.93001 0.91714 0.92386 0.77082 0.88957 0.88938 0.85688 0.86158 0.91504 0.91003 0.90919 0.90918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.00 8.98 59.85 0.54 4.54 16 2 N -0.60 -15.12 2.92 -181.12 -0.53 -15.65 16 3 C -0.26 -7.18 9.65 -15.06 -0.15 -7.33 16 4 H 0.07 1.88 7.86 -52.49 -0.41 1.46 16 5 C 0.00 0.09 5.10 -17.43 -0.09 0.00 16 6 N -0.91 -26.57 10.71 55.49 0.59 -25.97 16 7 Si 0.91 22.06 29.57 -169.99 -5.03 17.03 16 8 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 9 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 10 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 11 C 0.14 2.86 5.76 -4.04 -0.02 2.84 16 12 C 0.09 1.75 6.00 -4.05 -0.02 1.72 16 13 N -0.73 -10.38 5.56 -60.30 -0.33 -10.71 16 14 C 0.51 7.38 7.63 -10.98 -0.08 7.30 16 15 O -0.54 -10.23 14.92 5.56 0.08 -10.15 16 16 C -0.13 -1.34 5.09 -27.88 -0.14 -1.48 16 17 C -0.05 -0.58 2.52 -90.71 -0.23 -0.81 16 18 H 0.09 1.10 7.90 -51.93 -0.41 0.69 16 19 C -0.14 -1.62 9.26 -35.69 -0.33 -1.95 16 20 C -0.19 -1.89 10.77 -35.70 -0.38 -2.27 16 21 C -0.10 -0.81 6.81 -26.82 -0.18 -0.99 16 22 C -0.12 -0.99 6.71 -25.00 -0.17 -1.15 16 23 H 0.03 0.88 7.34 -51.93 -0.38 0.50 16 24 H 0.04 1.13 7.34 -51.93 -0.38 0.75 16 25 H 0.00 -0.03 8.03 -51.93 -0.42 -0.45 16 26 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 27 H 0.04 0.73 8.07 -51.93 -0.42 0.31 16 28 H 0.05 1.01 8.04 -51.93 -0.42 0.59 16 29 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 30 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.40 4.34 8.47 -40.82 -0.35 4.00 16 32 H 0.09 0.80 8.13 -51.93 -0.42 0.37 16 33 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.13 1.71 7.58 -52.48 -0.40 1.32 16 35 H 0.12 1.07 8.06 -52.48 -0.42 0.65 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.07 0.51 7.91 -51.93 -0.41 0.10 16 39 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 321.20 15.07 4.84 4.84 Total: -1.00 -32.23 321.20 -8.15 -40.38 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: -6.51 Total: -0.18 kcal Atomic # 6 Polarization: 1.68 SS G_CDS: -1.26 Total: 0.41 kcal Atomic # 7 Polarization: -52.07 SS G_CDS: -0.27 Total: -52.34 kcal Atomic # 8 Polarization: -10.23 SS G_CDS: 0.08 Total: -10.15 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.03 Total: 17.03 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -32.23 -8.15 -40.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663137403.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.080 kcal (2) G-P(sol) polarization free energy of solvation -32.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds